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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018598 ID=TCONS_00018598|Name=TCONS_00018598|organism=Clytia hemisphaerica|type=transcript|length=2025bp
atgATATATATTTAAATGATTAGGAGAGATACTATACGTCGGAGAAAGGG
AAAAAACTCAATAACCCAAATtcatctggtcgccggtcgtggtcgtcatt
tctggtcgagGTTAGAAACTTTCCATGAAACGTTCTATCAAAAAATGACA
TAACAAttcattattgttattattttttttttatctaaatgtATCAAAAT
ATATTAAACTCTAGACACAATACTTGAACATGCAAAAACACTAACACGTT
AAAGGCTAAAGATTTTTGGACTATTGTTGCTAGTAAAGTTGCAAGTGACT
GAAGAAGCTTTGAACGACGTGTGAAGAGGAATACAAAAATCTACCATCTT
AAGCCACGcttcaaaattgataaaatgcGGAACGCTAAAACGCCTATGAA
ATTCCTTGCAGCTGCAGGTTATGCAGtgattaaaaaactataagGGGTTG
GTGTTTATTATTTTAACCCTAGCTGTTCTTTTAAACCAAGGTGAAATAAA
GAAACAATGCAATGCAATGCAATGCAATACAATGTACAGTAATGCGCaaa
atttaaagatattttatttaTCTACACTTTATTCCTTGTTGAGGTCAAAT
CGTCCTCCTCCAAAACGATGGCATTGATTAAACATTTACCAGTTGGGTCA
TACACTTCAATATTACAGGTACCGAGAACATTAGAAGCTATCCTTTGCAC
ACTGGTGGCTGGGTGAAGAAGTTGTGAACAATCAAGAGATGATGCAAAAT
CACCGTAGATCGATCGAACAATAACGTCAATATAAAAGCTATTAGGTGAA
CTTTGGTGAGAAATGACCAGGTAAACATTACTAACTTTGTAAACAATATT
TAAAGGAAGTTGAAAGATTATTTCTGATTGCGCTTCTTTTGCGACATAAC
CACCACGAATGTCCGTCCTCTCTGCAATGGACTGATCCCATTTACATTTA
GAGCGTCGCCGGTATCCACGAGACCATAACAAAGGGATATCGTATATCGT
TTTTCTTAATGCATTTGCGAACGGCAGCAATCCAGTAAAGCATTGAGCGT
TATTCTCGGACTGGGAAGATGGAAAATGTTTATACTGTCTTGTTCTATTT
GGGCTTTTAAGGAAAGTTATGAAAATATTTCGGATATAATTGATTAATGT
AAAACCAATCTGCGCATGAGCTTTATGGGAAGGGTGAATATGTACGAAGT
agtcttttttcaataaaatccgATTGTATTGTTGTACATTTCTGCAGATG
ATTTCTTGCATACTAGCGACACTAATCTGATACTGTCGACTTTTTTGTCG
CACAACTTTATCTTTCGCATTGAAGAATTCGCTTGTCACCAAGCAAGTCA
ATTGCTCTCCTTGGAAAATGGTGTTGGGAGAAAATTTCACCAGTATAAAT
GCTGGAGTAGATGTGCTGTATTGGAGAATACTTTTGAAGAAGTTATCCAG
TATGCGACTGTAGTCATCGAAGTAAAAGTCATTCATGAAGAATTCCCAAA
AAACAATGTCGAAAGCTTTTTTGTTATCGAGGTATATTTTCCAGCAGTAA
CTCATGTATGCTGAACCCACTCCTCCTATAGCGATGACTTTTTTATGCAG
AAAGCTGCCCGTGACCGGGAATATGTTCTCATTCCACCAAGAAGAGAAAG
CCATATGATATGTTTGTGTTTTACTGCCAGCCCCCAAATCAGCACCAATA
GTACTTGATCCTCCCAGTACCAACAATGTTACATTCTGTCCTTGTGaagc
tttttcaaatatttcttgcaGACGCTCGTTCGTCAACTCACCGCAGTATT
CTATTCCTAATTTCTCATATTTCGTGTCCACTTCTAAAAGTTTTGAGGTG
CTAAAATTAAACCTGAAGAAAGTGGTTTCCAAGATGTCTTTGGATTGTAA
TACTTCTGCAATGTCTCCATTTTGATGCAAGCTATTGAccaaagaaatca
aacaaacataaaaaatttcaaataataatCGCGAAATTCTCATTGTGCTC
ACTTTGTCGGTTTTTTCGCAATAAC Run BLAST on NCBI protein sequence of TCONS_00018598-protein >TCONS_00018598-protein ID=TCONS_00018598-protein|Name=TCONS_00018598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
YCEKTDKVSTMRISRLLFEIFYVCLISLVNSLHQNGDIAEVLQSKDILET
TFFRFNFSTSKLLEVDTKYEKLGIEYCGELTNERLQEIFEKASQGQNVTL
LVLGGSSTIGADLGAGSKTQTYHMAFSSWWNENIFPVTGSFLHKKVIAIG
GVGSAYMSYCWKIYLDNKKAFDIVFWEFFMNDFYFDDYSRILDNFFKSIL
QYSTSTPAFILVKFSPNTIFQGEQLTCLVTSEFFNAKDKVVRQKSRQYQI
SVASMQEIICRNVQQYNRILLKKDYFVHIHPSHKAHAQIGFTLINYIRNI
FITFLKSPNRTRQYKHFPSSQSENNAQCFTGLLPFANALRKTIYDIPLLW
SRGYRRRSKCKWDQSIAERTDIRGGYVAKEAQSEIIFQLPLNIVYKVSNV
YLVISHQSSPNSFYIDVIVRSIYGDFASSLDCSQLLHPATSVQRIASNVL
GTCNIEVYDPTGKCLINAIVLEEDDLTSTRNKV Run BLAST on NCBI transcript from alignment at sc0000301:353702..355726 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018598 ID=TCONS_00018598|Name=TCONS_00018598|organism=Clytia hemisphaerica|type=transcript|length=2025bp|location=Sequence derived from alignment at sc0000301:353702..355726 (Clytia hemisphaerica)
GTTATTGCGAAAAAACCGACAAAGTGAGCACAATGAGAATTTCGCGatta
ttatttgaaattttttatgtttgtttgatttctttggTCAATAGCTTGCA
TCAAAATGGAGACATTGCAGAAGTATTACAATCCAAAGACATCTTGGAAA
CCACTTTCTTCAGGTTTAATTTTAGCACCTCAAAACTTTTAGAAGTGGAC
ACGAAATATGAGAAATTAGGAATAGAATACTGCGGTGAGTTGACGAACGA
GCGTCtgcaagaaatatttgaaaaagcttCACAAGGACAGAATGTAACAT
TGTTGGTACTGGGAGGATCAAGTACTATTGGTGCTGATTTGGGGGCTGGC
AGTAAAACACAAACATATCATATGGCTTTCTCTTCTTGGTGGAATGAGAA
CATATTCCCGGTCACGGGCAGCTTTCTGCATAAAAAAGTCATCGCTATAG
GAGGAGTGGGTTCAGCATACATGAGTTACTGCTGGAAAATATACCTCGAT
AACAAAAAAGCTTTCGACATTGTTTTTTGGGAATTCTTCATGAATGACTT
TTACTTCGATGACTACAGTCGCATACTGGATAACTTCTTCAAAAGTATTC
TCCAATACAGCACATCTACTCCAGCATTTATACTGGTGAAATTTTCTCCC
AACACCATTTTCCAAGGAGAGCAATTGACTTGCTTGGTGACAAGCGAATT
CTTCAATGCGAAAGATAAAGTTGTGCGACAAAAAAGTCGACAGTATCAGA
TTAGTGTCGCTAGTATGCAAGAAATCATCTGCAGAAATGTACAACAATAC
AATcggattttattgaaaaaagactACTTCGTACATATTCACCCTTCCCA
TAAAGCTCATGCGCAGATTGGTTTTACATTAATCAATTATATCCGAAATA
TTTTCATAACTTTCCTTAAAAGCCCAAATAGAACAAGACAGTATAAACAT
TTTCCATCTTCCCAGTCCGAGAATAACGCTCAATGCTTTACTGGATTGCT
GCCGTTCGCAAATGCATTAAGAAAAACGATATACGATATCCCTTTGTTAT
GGTCTCGTGGATACCGGCGACGCTCTAAATGTAAATGGGATCAGTCCATT
GCAGAGAGGACGGACATTCGTGGTGGTTATGTCGCAAAAGAAGCGCAATC
AGAAATAATCTTTCAACTTCCTTTAAATATTGTTTACAAAGTTAGTAATG
TTTACCTGGTCATTTCTCACCAAAGTTCACCTAATAGCTTTTATATTGAC
GTTATTGTTCGATCGATCTACGGTGATTTTGCATCATCTCTTGATTGTTC
ACAACTTCTTCACCCAGCCACCAGTGTGCAAAGGATAGCTTCTAATGTTC
TCGGTACCTGTAATATTGAAGTGTATGACCCAACTGGTAAATGTTTAATC
AATGCCATCGTTTTGGAGGAGGACGATTTGACCTCAACAAGGAATAAAGT
GTAGAtaaataaaatatctttaaattttGCGCATTACTGTACATTGTATT
GCATTGCATTGCATTGCATTGTTTCTTTATTTCACCTTGGTTTAAAAGAA
CAGCTAGGGTTAAAATAATAAACACCAACCCcttatagttttttaatcaC
TGCATAACCTGCAGCTGCAAGGAATTTCATAGGCGTTTTAGCGTTCCgca
ttttatcaattttgaagCGTGGCTTAAGATGGTAGATTTTTGTATTCCTC
TTCACACGTCGTTCAAAGCTTCTTCAGTCACTTGCAACTTTACTAGCAAC
AATAGTCCAAAAATCTTTAGCCTTTAACGTGTTAGTGTTTTTGCATGTTC
AAGTATTGTGTCTAGAGTTTAATATATTTTGATacatttagataaaaaaa
aaataataacaataatgaaTTGTTATGTCATTTTTTGATAGAACGTTTCA
TGGAAAGTTTCTAACctcgaccagaaatgacgaccacgaccggcgaccag
atgaATTTGGGTTATTGAGTTTTTTCCCTTTCTCCGACGTATAGTATCTC
TCCTAATCATTTAAATATATATcat Coding sequence (CDS) from alignment at sc0000301:353702..355726 >TCONS_00018598 ID=TCONS_00018598|Name=TCONS_00018598|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000301:353702..355726 (Clytia hemisphaerica)
TATTGCGAAAAAACCGACAAAGTGAGCACAATGAGAATTTCGCGattatt
atttgaaattttttatgtttgtttgatttctttggTCAATAGCTTGCATC
AAAATGGAGACATTGCAGAAGTATTACAATCCAAAGACATCTTGGAAACC
ACTTTCTTCAGGTTTAATTTTAGCACCTCAAAACTTTTAGAAGTGGACAC
GAAATATGAGAAATTAGGAATAGAATACTGCGGTGAGTTGACGAACGAGC
GTCtgcaagaaatatttgaaaaagcttCACAAGGACAGAATGTAACATTG
TTGGTACTGGGAGGATCAAGTACTATTGGTGCTGATTTGGGGGCTGGCAG
TAAAACACAAACATATCATATGGCTTTCTCTTCTTGGTGGAATGAGAACA
TATTCCCGGTCACGGGCAGCTTTCTGCATAAAAAAGTCATCGCTATAGGA
GGAGTGGGTTCAGCATACATGAGTTACTGCTGGAAAATATACCTCGATAA
CAAAAAAGCTTTCGACATTGTTTTTTGGGAATTCTTCATGAATGACTTTT
ACTTCGATGACTACAGTCGCATACTGGATAACTTCTTCAAAAGTATTCTC
CAATACAGCACATCTACTCCAGCATTTATACTGGTGAAATTTTCTCCCAA
CACCATTTTCCAAGGAGAGCAATTGACTTGCTTGGTGACAAGCGAATTCT
TCAATGCGAAAGATAAAGTTGTGCGACAAAAAAGTCGACAGTATCAGATT
AGTGTCGCTAGTATGCAAGAAATCATCTGCAGAAATGTACAACAATACAA
TcggattttattgaaaaaagactACTTCGTACATATTCACCCTTCCCATA
AAGCTCATGCGCAGATTGGTTTTACATTAATCAATTATATCCGAAATATT
TTCATAACTTTCCTTAAAAGCCCAAATAGAACAAGACAGTATAAACATTT
TCCATCTTCCCAGTCCGAGAATAACGCTCAATGCTTTACTGGATTGCTGC
CGTTCGCAAATGCATTAAGAAAAACGATATACGATATCCCTTTGTTATGG
TCTCGTGGATACCGGCGACGCTCTAAATGTAAATGGGATCAGTCCATTGC
AGAGAGGACGGACATTCGTGGTGGTTATGTCGCAAAAGAAGCGCAATCAG
AAATAATCTTTCAACTTCCTTTAAATATTGTTTACAAAGTTAGTAATGTT
TACCTGGTCATTTCTCACCAAAGTTCACCTAATAGCTTTTATATTGACGT
TATTGTTCGATCGATCTACGGTGATTTTGCATCATCTCTTGATTGTTCAC
AACTTCTTCACCCAGCCACCAGTGTGCAAAGGATAGCTTCTAATGTTCTC
GGTACCTGTAATATTGAAGTGTATGACCCAACTGGTAAATGTTTAATCAA
TGCCATCGTTTTGGAGGAGGACGATTTGACCTCAACAAGGAATAAAGTGT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018598-exon-sc0000301-1491911889:353702..355726 | TCONS_00018598-exon-sc0000301-1491911889:353702..355726 | Clytia hemisphaerica | exon |
| TCONS_00018598-exon-sc0000301-1510915933:353702..355726 | TCONS_00018598-exon-sc0000301-1510915933:353702..355726 | Clytia hemisphaerica | exon |
| TCONS_00018598-exon-sc0000301-1575043694:353702..355726 | TCONS_00018598-exon-sc0000301-1575043694:353702..355726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:353702..355726 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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