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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018623 ID=TCONS_00018623|Name=TCONS_00018623|organism=Clytia hemisphaerica|type=transcript|length=1928bpRun BLAST on NCBI protein sequence of TCONS_00018623-protein >TCONS_00018623-protein ID=TCONS_00018623-protein|Name=TCONS_00018623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp MTTQHYKGLDQTKLDKYMKLPQKNAVQVLYVWIDGTGEHMRCKTKTMWNRRun BLAST on NCBI transcript from alignment at sc0000303:112045..141151- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018623 ID=TCONS_00018623|Name=TCONS_00018623|organism=Clytia hemisphaerica|type=transcript|length=29107bp|location=Sequence derived from alignment at sc0000303:112045..141151- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000303:112045..141151- >TCONS_00018623 ID=TCONS_00018623|Name=TCONS_00018623|organism=Clytia hemisphaerica|type=CDS|length=7728bp|location=Sequence derived from alignment at sc0000303:112045..141151- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018623 vs. Swiss-Prot (Human)
Match: GLNA (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4) HSP 1 Score: 465.307 bits (1196), Expect = 8.145e-159 Identity = 222/366 (60.66%), Postives = 282/366 (77.05%), Query Frame = 2
Query: 434 MTTQHYKGLDQTKLDKYMKLPQKNAVQVLYVWIDGTGEHMRCKTKTMWNREDVELKDLPVWNFDGSSTGQAEGHNSDVYLHPVALFPDPFRGLPNKIALCETYTHDHKPTKSNKRRSCLTVMENPKVKESKPWFGLEQEYTLLDADNYPLGWPKXXXXXXXXXXXCSVGTGRVFGREVMEAHYRCCMYAGVTISGENAEVMPAQWEYQVGPCEGIEMGDHLWMARYFMERVCEDFGVIVTLDPKPIPGEWNGAGCHANFSTEAMRVDGGINEINKAIERLSKRHDWHIQQYDPSGGADNARRLTGKCETASIHEFSYGVASRNTSIRIPRQIAEDGKGYLEDRRPSSNCDPYSVTEAIVRTSVLLE 1531
MTT L++ YM LPQ VQ +Y+WIDGTGE +RCKT+T+ + E +++LP WNFDGSST Q+EG NSD+YL P A+F DPFR PNK+ LCE + ++ +P ++N R +C +M+ V PWFG+EQEYTL+ D +P GWP G+PGPQGPYYC VG R +GR+++EAHYR C+YAGV I+G NAEVMPAQWE+Q+GPCEGI MGDHLW+AR+ + RVCEDFGVI T DPKPIPG WNGAGCH NFST+AMR + G+ I +AIE+LSKRH +HI+ YDP GG DNARRLTG ET++I++FS GVA+R+ SIRIPR + ++ KGY EDRRPS+NCDP+SVTEA++RT +L E
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTL-DSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMD--MVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 363 The following BLAST results are available for this feature:
BLAST of TCONS_00018623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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