TCONS_00018648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018648
Unique NameTCONS_00018648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018648 ID=TCONS_00018648|Name=TCONS_00018648|organism=Clytia hemisphaerica|type=transcript|length=667bp
GTACAGAAACTTTGAATGAAGATGCGACTGAGGCTGACaaacgaaaattt
aaaaaacgagAAAACCAAGCTCTGGCTGCGATTTGTCTCGGGATTGCAAC
GAACTTGCAAATTTATGTTCGATCCGCCGCAACCGCCACAGCTGCATGGG
AAAATATGAGAAACATTTTCAGCAAAAGACTCTTTCGAAAAAGATTTATT
ACCGCCGGAAATTATACTCCGCACGGATGGAGAAAGGAAAAGACATGACC
GAACACATTAACCAAATCAAAACGTTAGGGGAGCATTTGGAAGCCATCGA
CGTTGCAATTGCCGAGAAAGATCTTGTGATCCTTTTGATCAGCAGTTTAC
CGGATGACTACAATTATCTAATTACCGCTTTAGAGACAATCGCGGATGAT
AACTTGACATGGGATTACGTTCGCGACCGTTTAATCCACGAAAGCGAGAA
GAAGTCGGAGAAAAGCCCAACATCACCTGAAGCTCTGAACTCAAAGCTAG
acaaaaagactttgaaatgtCACTATTGCAAAAAGACTGGACTCTTTGCG
CGAGAATGTTACaagaagaaaaatgatcttAAAAGGAAAGAAGGTCAAGC
CAAACTTGCAAAAGATGAAGCCGTATCTGATGTACAAGCAAATTCTGAAC
TCGCTTTAAAATCATCG
Run BLAST on NCBI

protein sequence of TCONS_00018648-protein

>TCONS_00018648-protein ID=TCONS_00018648-protein|Name=TCONS_00018648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MGKYEKHFQQKTLSKKIYYRRKLYSARMEKGKDMTEHINQIKTLGEHLEA
IDVAIAEKDLVILLISSLPDDYNYLITALETIADDNLTWDYVRDRLIHES
EKKSEKSPTSPEALNSKLDKKTLKCHYCKKTGLFARECYKKKNDLKRKEG
QAKLAKDEAVSDVQANSELALKSS
Run BLAST on NCBI

transcript from alignment at sc0000303:232132..232798

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018648 ID=TCONS_00018648|Name=TCONS_00018648|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0000303:232132..232798 (Clytia hemisphaerica)
CGATGATTTTAAAGCGAGTTCAGAATTTGCTTGTACATCAGATACGGCTT
CATCTTTTGCAAGTTTGGCTTGACCTTCTTTCCTTTTaagatcatttttc
ttcttGTAACATTCTCGCGCAAAGAGTCCAGTCTTTTTGCAATAGTGaca
tttcaaagtctttttgtCTAGCTTTGAGTTCAGAGCTTCAGGTGATGTTG
GGCTTTTCTCCGACTTCTTCTCGCTTTCGTGGATTAAACGGTCGCGAACG
TAATCCCATGTCAAGTTATCATCCGCGATTGTCTCTAAAGCGGTAATTAG
ATAATTGTAGTCATCCGGTAAACTGCTGATCAAAAGGATCACAAGATCTT
TCTCGGCAATTGCAACGTCGATGGCTTCCAAATGCTCCCCTAACGTTTTG
ATTTGGTTAATGTGTTCGGTCATGTCTTTTCCTTTCTCCATCCGTGCGGA
GTATAATTTCCGGCGGTAATAAATCTTTTTCGAAAGAGTCTTTTGCTGAA
AATGTTTCTCATATTTTCCCATGCAGCTGTGGCGGTTGCGGCGGATCGAA
CATAAATTTGCAAGTTCGTTGCAATCCCGAGACAAATCGCAGCCAGAGCT
TGGTTTTctcgttttttaaattttcgtttGTCAGCCTCAGTCGCATCTTC
ATTCAAAGTTTCTGTAC

Coding sequence (CDS) from alignment at sc0000303:232132..232798

>TCONS_00018648 ID=TCONS_00018648|Name=TCONS_00018648|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000303:232132..232798 (Clytia hemisphaerica)
CGATGATTTTAAAGCGAGTTCAGAATTTGCTTGTACATCAGATACGGCTT
CATCTTTTGCAAGTTTGGCTTGACCTTCTTTCCTTTTaagatcatttttc
ttcttGTAACATTCTCGCGCAAAGAGTCCAGTCTTTTTGCAATAGTGaca
tttcaaagtctttttgtCTAGCTTTGAGTTCAGAGCTTCAGGTGATGTTG
GGCTTTTCTCCGACTTCTTCTCGCTTTCGTGGATTAAACGGTCGCGAACG
TAATCCCATGTCAAGTTATCATCCGCGATTGTCTCTAAAGCGGTAATTAG
ATAATTGTAGTCATCCGGTAAACTGCTGATCAAAAGGATCACAAGATCTT
TCTCGGCAATTGCAACGTCGATGGCTTCCAAATGCTCCCCTAACGTTTTG
ATTTGGTTAATGTGTTCGGTCATGTCTTTTCCTTTCTCCATCCGTGCGGA
GTATAATTTCCGGCGGTAATAAATCTTTTTCGAAAGAGTCTTTTGCTGAA
AATGTTTCTCATATTTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010427XLOC_010427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018648-exon-sc0000303-1491911889:232132..232798TCONS_00018648-exon-sc0000303-1491911889:232132..232798Clytia hemisphaericaexon
TCONS_00018648-exon-sc0000303-1510915933:232132..232798TCONS_00018648-exon-sc0000303-1510915933:232132..232798Clytia hemisphaericaexon
TCONS_00018648-exon-sc0000303-1575043694:232132..232798TCONS_00018648-exon-sc0000303-1575043694:232132..232798Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018648-proteinTCONS_00018648-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:232132..232798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203916	0.325852	0.654684	1.27377	8.99108	7.56696	1.83635	2.63916	0.593416	2.32391	2.03959	0.906078	0.643513	0.409665	0.527828	0.653841	0.306298	0.373929	0.264618	0.430836	0.33498	0.931061	0.306567	0	0.0831679	0	0.230267	0.142885	0.506819	0.175194
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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