TCONS_00018668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018668
Unique NameTCONS_00018668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018668 ID=TCONS_00018668|Name=TCONS_00018668|organism=Clytia hemisphaerica|type=transcript|length=422bp
ataggtgatggttctttttgaaaataagaacctCAGGAGCTGCTGGGGAA
TAGCTTTAAGCGAATTAGAAACTGTCCTTCATATTCACCGAAAGCCAAAT
CATTCTTTTGGTGATACATTTAAAGCTTTAATAAAAGCCCTACAAAATCT
TAATTGTGAGATATGGCTGGATTTTTTCTTCTATCCCAAACTGTCTTCTC
AACTTATAACTGAATACCGCGGggaaaatggttttgaagaaatcCTCGAA
AAAGATATTAAAACGATTAAGTTTGATAGTGCCAAGGAAGTCAACATTAA
AGATCTACTCAACACTTTTATGGAAAGAACTGAATGCAACTTTCCATATG
AAGATGAAAAGTATTGTATTCACAAAGATGAAAGTGTCTATGcaagaaaa
ttctttcaaagCCTGCCGGAGC
Run BLAST on NCBI

protein sequence of TCONS_00018668-protein

>TCONS_00018668-protein ID=TCONS_00018668-protein|Name=TCONS_00018668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MVLFENKNLRSCWGIALSELETVLHIHRKPNHSFGDTFKALIKALQNLNC
EIWLDFFFYPKLSSQLITEYRGENGFEEILEKDIKTIKFDSAKEVNIKDL
LNTFMERTECNFPYEDEKYCIHKDESVYARKFFQSLPE
Run BLAST on NCBI

transcript from alignment at sc0000304:76123..77087-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018668 ID=TCONS_00018668|Name=TCONS_00018668|organism=Clytia hemisphaerica|type=transcript|length=965bp|location=Sequence derived from alignment at sc0000304:76123..77087- (Clytia hemisphaerica)
ATAGGTGATGGTTCTTTTTGAAAATAAGAACCTCAGGAGCTGCTGGGGAA
TAGCTTTAAGCGAATTAGAAACTGTCCTTCATATTCACCGAAAGCCAAAT
CATTCTTTTGGTGATACATTTAAAGCTTTAATAAAAGCCCTACAAAATCT
TAATTGTGAGGTTAGTAACTTACTAAATGTAGATGTATGGGGTGTTGAAA
TTACTGTCAGTTATACTCTACACTTCAGTTATTTGTTGTGATTTTTGTGA
GCCACAAGGTACACTTTTTAAAACAAATCAATTTGCAATAATTCAACTGC
AATGATTAAGAATGATTTATCTAATTTTCTATTCATAGATATGGCTGGAT
TTTTTCTTCTATCCCAAACTGTCTTCTCAACTTATAACTGAATACCGCGG
GGAAAATGGTTTTGAAGAAATCCTCGAAAAAGGTATTAGATCAAATTCTT
TTGTCACAAAGGCTCAAATTTTTTTTTTCTTAAATCTTATAGGTTCAAGT
TTTCGGGGCGTTAATAGATTTTCGAGGATAAGCTTCAAGCAAGACGCTTT
GCTTATTTTGATTTATTCTGTACCCAAAATGATATATTATCCTGTGTTAT
ATTACTTTTCTTTAGATATTAAAACGATTAAGTTTGATAGTGCCAAGGAA
GTCAACATTAAAGATCTACTCAACACTTTTATGGAAAGAACTGAATGCAA
CTTTCCATATGAAGATGAAAAGTATTGTATTCACAAAGGTACAACAAATT
TTTTTCAGGCAAACACTTTACAAATCACCACACAACATTTGATCCCAAAC
CTTGAAAATCATATCAAAAAAGGCCATCCACAGGAAAAGGGAATAATATA
CTTAACATAGTTATTGCATTGAATCACAGTATTAATTAAAGCTTTCATTA
CTTTTACGTTACCGTTCCAGATGAAAGTGTCTATGCAAGAAAATTCTTTC
AAAGCCTGCCGGAGC

Coding sequence (CDS) from alignment at sc0000304:76123..77087-

>TCONS_00018668 ID=TCONS_00018668|Name=TCONS_00018668|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0000304:76123..77087- (Clytia hemisphaerica)
ATGAAAGTGTCTATGCAAGAAAATTCTTTCAAAGCCTGCCGGAGATATTA
AAACGATTAAGTTTGATAGTGCCAAGGAAGTCAACATTAAAGATCTACTC
AACACTTTTATGGAAAGAACTGAATGCAACTTTCCATATGAAGATGAAAA
GTATTGTATTCACAAAGATATGGCTGGATTTTTTCTTCTATCCCAAACTG
TCTTCTCAACTTATAACTGAATACCGCGGGGAAAATGGTTTTGAAGAAAT
CCTCGAAAAAGATGGTTCTTTTTGAAAATAAGAACCTCAGGAGCTGCTGG
GGAATAGCTTTAAGCGAATTAGAAACTGTCCTTCATATTCACCGAAAGCC
AAATCATTCTTTTGGTGATACATTTAAAGCTTTAATAAAAGCCCTACAAA
ATCTTAATTGTGAGATGAAAGTGTCTATGCAAGAAAATTCTTTCAAAGCC
TGCCGGAGATATTAAAACGATTAAGTTTGATAGTGCCAAGGAAGTCAACA
TTAAAGATCTACTCAACACTTTTATGGAAAGAACTGAATGCAACTTTCCA
TATGAAGATGAAAAGTATTGTATTCACAAAGATATGGCTGGATTTTTTCT
TCTATCCCAAACTGTCTTCTCAACTTATAACTGAATACCGCGGGGAAAAT
GGTTTTGAAGAAATCCTCGAAAAAGATGGTTCTTTTTGAAAATAAGAACC
TCAGGAGCTGCTGGGGAATAGCTTTAAGCGAATTAGAAACTGTCCTTCAT
ATTCACCGAAAGCCAAATCATTCTTTTGGTGATACATTTAAAGCTTTAAT
AAAAGCCCTACAAAATCTTAATTGTGAGATGAAAGTGTCTATGCAAGAAA
ATTCTTTCAAAGCCTGCCGGAGATATTAAAACGATTAAGTTTGATAGTGC
CAAGGAAGTCAACATTAAAGATCTACTCAACACTTTTATGGAAAGAACTG
AATGCAACTTTCCATATGAAGATGAAAAGTATTGTATTCACAAAGATATG
GCTGGATTTTTTCTTCTATCCCAAACTGTCTTCTCAACTTATAACTGAAT
ACCGCGGGGAAAATGGTTTTGAAGAAATCCTCGAAAAAGATGGTTCTTTT
TGAAAATAAGAACCTCAGGAGCTGCTGGGGAATAGCTTTAAGCGAATTAG
AAACTGTCCTTCATATTCACCGAAAGCCAAATCATTCTTTTGGTGATACA
TTTAAAGCTTTAATAAAAGCCCTACAAAATCTTAATTGTGAGATGAAAGT
GTCTATGCAAGAAAATTCTTTCAAAGCCTGCCGGAGATATTAAAACGATT
AAGTTTGATAGTGCCAAGGAAGTCAACATTAAAGATCTACTCAACACTTT
TATGGAAAGAACTGAATGCAACTTTCCATATGAAGATGAAAAGTATTGTA
TTCACAAAGATATGGCTGGATTTTTTCTTCTATCCCAAACTGTCTTCTCA
ACTTATAACTGAATACCGCGGGGAAAATGGTTTTGAAGAAATCCTCGAAA
AAGATGGTTCTTTTTGAAAATAAGAACCTCAGGAGCTGCTGGGGAATAGC
TTTAAGCGAATTAGAAACTGTCCTTCATATTCACCGAAAGCCAAATCATT
CTTTTGGTGATACATTTAAAGCTTTAATAAAAGCCCTACAAAATCTTAAT
TGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010443XLOC_010443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018668-exon-sc0000304-1575043694:76928..77087TCONS_00018668-exon-sc0000304-1575043694:76928..77087Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1575043694:76656..76749TCONS_00018668-exon-sc0000304-1575043694:76656..76749Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1575043694:76350..76472TCONS_00018668-exon-sc0000304-1575043694:76350..76472Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1575043694:76123..76167TCONS_00018668-exon-sc0000304-1575043694:76123..76167Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1510915933:76928..77087TCONS_00018668-exon-sc0000304-1510915933:76928..77087Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1510915933:76656..76749TCONS_00018668-exon-sc0000304-1510915933:76656..76749Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1510915933:76350..76472TCONS_00018668-exon-sc0000304-1510915933:76350..76472Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1510915933:76123..76167TCONS_00018668-exon-sc0000304-1510915933:76123..76167Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1491911889:76928..77087TCONS_00018668-exon-sc0000304-1491911889:76928..77087Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1491911889:76656..76749TCONS_00018668-exon-sc0000304-1491911889:76656..76749Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1491911889:76350..76472TCONS_00018668-exon-sc0000304-1491911889:76350..76472Clytia hemisphaericaexon
TCONS_00018668-exon-sc0000304-1491911889:76123..76167TCONS_00018668-exon-sc0000304-1491911889:76123..76167Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018668-proteinTCONS_00018668-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:76123..77087 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.333124	0.812122	0.18859	0	2.4708	1.41997	0.214142	0.601431	0	0.347714	0	0.443718	0	0	0.851216	1.21798	0.375113	0.768957	0.177059	0.741119	0.805209	0.471303	0	0	0.17883	0.478806	0	0	0	0.188354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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