TCONS_00018676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018676
Unique NameTCONS_00018676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018676 ID=TCONS_00018676|Name=TCONS_00018676|organism=Clytia hemisphaerica|type=transcript|length=735bp
aatagatatataaatcgaaatttaaaattatacattacttccattaaatt
ctaattattcgttttataaataggtaggtccattaaagtattacttgttt
tttactgtttttattaCGCTTTTTTCTCAATATAAAATTTAACTCTTTTG
ACAGGCGCCATGGAGATTGCTGAAAAGTCAAATTGAATTGATGCAGAAGT
TGATTAAAGACTTGGGTATGAATAAGCCAGGTGGATTTTCAACGGAAAAT
GTGATGAAGGTGTTACTCCTGGGTTTAGAACATCCTCACAACGATGTCCG
AGATGCTGCTTTGTCCTGTATCGTTGATGTCTATAAAATTgtgaAAGAGC
CGTTGAAATCATTTTTCCCTCCTGATGACGCAAACACACGAAAGAATCCT
CTTTATACCAAACTCTTCGATAGTCTTGATCGAGCAGATGGTAAAATGAC
TGAATCAGAGAAAAAGGCTGcaacgaaaaagaagaaagaagatgcAGAGA
AAAGCAAAATGGAAGAGGTGAAAGCTTTACAAGCACAACTACAAGAAATG
CGATCTTTGGCAAAAGCTCAAGTacaagaaaatgaaaacgaGGCCAACCC
TTCGACACGAGAAGAAAACAACAACACGAAAAATAATAATGGTACAAAAG
CCACCAAAACTGACCTTGACAAGAATGCCAAGAAGAAATCCTTGGTAGCC
AGTCGTATCAGCATTCGTCCAATCTCGCAACGACA
Run BLAST on NCBI

transcript from alignment at sc0000304:154914..158053-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018676 ID=TCONS_00018676|Name=TCONS_00018676|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at sc0000304:154914..158053- (Clytia hemisphaerica)
AATAGATATATAAATCGAAATTTAAAATTATACATTACTTCCATTAAATT
CTAATTATTCGTTTTATAAATAGGTAGGTCCATTAAAGTATTACTTGTTT
TTTACTGTTTTTATTACGCTTTTTTCTCAATATAAAATTTAACTCTTTTG
ACAGGCGCCATGGAGATTGCTGAAAAGTCAAATTGAATTGATGCAGAAGT
TGATTAAAGACTTGGGTATGAATAAGCCAGGGTAAGATAGAGGTGCTTTT
TTGGCGGGAAATGAAACTTTTTAACGAAATTTTTAGTGTTATGTACCAAT
ACAGTTGATTCTCGATAACTTGGACGCTCACGGGGAACACAAATTTGTTC
GAGTTAAGATGTTTTGAGACGTGGAGTAGATTATAGGGCATTGTTACTGA
AGGGACGAGTTAAAGAGACTCCACTGCATTTGATTTAGACCTTTTTGATC
CATCCCCCCTAAATTCCTAGTAGACAGCATTTTAAATATTCTAATTATTT
TTTACAAGCATATTTAATCATGCCAAAAAGATCTGACTCATGGCTCTTTT
CTCCTATATTGTTGGCGAGATAGCCAGTTTACAGCTACACACCTCTTCTC
ATTTACAAAGATTGGACTTAGCAAACGGGTTTTCGTCACCAGGTTTCCCG
GAAAGGATGAAATTTACTTTTCCAAAGTCAAAGCTCAGATGTTCTAACGT
TTTCTTGATTCTAATTTTGAATTTCTTTTGTTATCGTTAACTTTTAGTGG
ATTTTCAACGGAAAATGTGATGAAGGTGTTACTCCTGGGTTTAGAACATC
CTCACAACGATGTCCGAGATGCTGCTTTGTCCTGTATCGTTGATGTCTAT
AAAATTGTAAGTGAATTCCCGTGGTCTCTACTTGTAATTGATTTATGAAA
CCAGCAATTGTTATTCTTATTCCCTACTCACACGGGAAGTTAACTACAGA
GAGATCAAATCTCGAAAGTTTGATGATTAATAGAAGTTTGAATTAGCGGA
AGTTAACGAGTCAGTCCAGAGTTCGTGTAAAATCTTTTCATCATTAGTCA
TTAAATTAACTCTCCTCCGGTCAACCTCATCAAATTTTCCTCTTCAAATT
TGACAAAATTTGATAAAACTTCCCAAGGTCATCCATTCATATTAGCTGTT
TTAGTGAAAAGAATTGATGCTTTATTTACCCTGTCAGTCGTCAAAATAAT
GTATACGTTCTCGCTGGTAACATATAACTTTAATACATTCTGTAGGCTCA
ATGAACCAGCTTGTTCCGGGGTATTTCTTCTTTTTTTCTTTCAGGTGAAA
GAGCCGTTGAAATCATTTTTCCCTCCTGATGACGCAAACACACGAAAGAA
TCCTCTTTATACCAAACTCTTCGATAGTCTTGATCGAGCAGATGGTAAAA
TGACTGAATCAGAGAAAAAGGTACACCGTCTTTCGTCACAAGCATGGGAG
GTGGGGCTTGAAAAAGTTATGAATCACCCTACATTCTTCTAGGCAATAAA
CACTATTTTTTTTAAAGTCCGTATATTTAGGACACTCGTTTGAGGTATCT
GAGCACACTACTGGCTAACGGTTATATAAAAAGTGTAGAGCTTAGGTCAA
TTTAGGTCAACATGGCAGATATCATCTGATCATGGAGGGGGGGGGGTATT
TTCCTTCGTTTCTCAATTTTAACCTTTGTGTGATTTTCATTCAGGCTGCA
ACGAAAAAGAAGAAAGAAGATGCAGAGAAAAGCAAAATGGAAGAGGTATG
ATGATTCTTTGTCGTAACTCAAAAATACTATGATCGGTCAGGGTATTGTA
ATGTTTATTCAATAGACTCGGTCCTTTGTCAGCAAGTTAGTGAGAGACGT
CAGTGTACCAGATCTTTCGTTTCATGAGAAAACTCTTTTTTCAATTCAAT
CTTTTTAATCTCTGCAATGTGACACATAAATGAAAGGCTATATGAGGTAT
CTTGATATTTTTGTGTCGAATATTCTCAGGTGAAAGCTTTACAAGCACAA
CTACAAGAAATGCGATCTTTGGCAAAAGCTCAAGTACAAGAAAATGAAAA
CGAGGCCAACCCTTCGACACGAGAAGAAAACAACAACACGAAAAATAATA
ATGGTACAAAAGCCACCAAAACTGACCTTGACAAGGTATTTAAACTTGTT
CAGGAAACTTATACTATGCATGGATAAGTGTTTGTAATCAAATCGTTTCA
CTTGAGAGCAATTTGGGGAAAATAGCACGAAGTTTATTTATGATGATCAG
AAAAACGTTCAAAAACTTTAAAATGAACCGAGGGTCTTATTTATTATGTA
ATTACTGATCTTATTTCCGTAACATCTTTCTCTATCGTACCATAGAATGC
CAAGAAGAAATCCTTGGTAGCCAGTCGTATCAGCATTCGTCCAATCTCGC
AACGACATAAAGGTTTGAATGTTTCTCATATCTTTGGAATGGTTCAGATT
ATTTGAAAAAGTAGCACCTTAAGGATGGCTCTTGCAGTGCAAATCCAATA
TTTTGAGGCAAACCTTTTTTGCCACCTTGTGTAAACCCGTGGAAACCACT
CTCAAAGGATTTAGTCTAATTACGTTAATATGGTTTCCACATATAGTAGC
AAAAACGCGTACTCTTCAAGCGGCGAATGCACTTTCATACGAATCCTATC
AAATTTGCGTTGCCACTACATTTTGCCGTCATTTCCCTAGTTTAATGCGT
CTTCTAATTAATGCGGGTAAAGTATTTCTGGTTGAATGTCTCTCCTCTAA
ATATCAACGCNTCTAATTAATGCGGGTAAAGTATTTCTGGTTGAGTGTCT
CTCCTCTAAATATCAACGCGGGCACTTTTCTCAATACCAAATCAAGGAAC
TTGATCAAATCAAAATAATAAAATTGTAAATAAAAAAGATCCTCATCTGT
TTCTATGGCTGCAGAATGGAATTGGCATTCGGCATCCATTCTTCGCAAAT
TAAAAATATCCATATTATTGAACTTATCTGCTTTATTGTTTTAACAACCA
ACATAGTGAGGCTAGACTCAGAATTACCTCCAATTATTTTAAAGTAATTT
CCTTCTATTATCAGCGCAGCCGTACTAAATTTGAGAAATGACGGTACCTG
CAATGTTACTAAACATTTCACCTCTTTCACTATTCTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010446XLOC_010446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018676-exon-sc0000304-1575043694:157823..158053TCONS_00018676-exon-sc0000304-1575043694:157823..158053Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1575043694:157198..157306TCONS_00018676-exon-sc0000304-1575043694:157198..157306Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1575043694:156634..156759TCONS_00018676-exon-sc0000304-1575043694:156634..156759Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1575043694:156309..156359TCONS_00018676-exon-sc0000304-1575043694:156309..156359Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1575043694:155919..156074TCONS_00018676-exon-sc0000304-1575043694:155919..156074Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1575043694:155648..155708TCONS_00018676-exon-sc0000304-1575043694:155648..155708Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1575043694:154914..154914TCONS_00018676-exon-sc0000304-1575043694:154914..154914Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:157823..158053TCONS_00018676-exon-sc0000304-1510915933:157823..158053Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:157198..157306TCONS_00018676-exon-sc0000304-1510915933:157198..157306Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:156634..156759TCONS_00018676-exon-sc0000304-1510915933:156634..156759Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:156309..156359TCONS_00018676-exon-sc0000304-1510915933:156309..156359Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:155919..156074TCONS_00018676-exon-sc0000304-1510915933:155919..156074Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:155648..155708TCONS_00018676-exon-sc0000304-1510915933:155648..155708Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1510915933:154914..154914TCONS_00018676-exon-sc0000304-1510915933:154914..154914Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:157823..158053TCONS_00018676-exon-sc0000304-1491911889:157823..158053Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:157198..157306TCONS_00018676-exon-sc0000304-1491911889:157198..157306Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:156634..156759TCONS_00018676-exon-sc0000304-1491911889:156634..156759Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:156309..156359TCONS_00018676-exon-sc0000304-1491911889:156309..156359Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:155919..156074TCONS_00018676-exon-sc0000304-1491911889:155919..156074Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:155648..155708TCONS_00018676-exon-sc0000304-1491911889:155648..155708Clytia hemisphaericaexon
TCONS_00018676-exon-sc0000304-1491911889:154914..154914TCONS_00018676-exon-sc0000304-1491911889:154914..154914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:154914..158053 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.862	18.6346	16.8486	15.0456	16.4925	11.1225	11.8458	10.5184	8.05981	6.00576	5.0565	5.92595	5.05466	3.87343	4.06877	6.27515	0.0167103	0	4.8208	4.63028	0.000127183	0	0	0.000363024	0	0	3.05318	5.89173	4.08503	4.28943
Blast
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BLAST of TCONS_00018676 vs. Swiss-Prot (Human)
Match: CE104 (Centrosomal protein of 104 kDa OS=Homo sapiens GN=CEP104 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.806e-18
Identity = 60/144 (41.67%), Postives = 94/144 (65.28%), Query Frame = 2 
Query:  164 RLLKSQIELMQKLIKDLGMNKPGGFSTENVMKVLLLGLEHPHNDVRDAALSCIVDVYKIVKEPLKSFFPPDDANTRKNPLYTKLFDSLDRADGXXXXXXXXXXXXXXXXXXXXXXXXXVKALQAQLQEMRSLAKAQVQENENEA 595
             L  SQ+ L+ +L+KDLG     GF+ +NVMK  +  LEH   +VR+ A+  I+D+Y+  +  +  + PPDD+NTR+N LY  +F+   + DG+ T++E +A  K   E+AEK K EE+KALQ QL  ++ + +A+VQE E++A
Sbjct:  582 HLAMSQMGLLARLLKDLGTGS-SGFTIDNVMKFSVSALEHRVYEVRETAVRIILDMYRQHQASILEYLPPDDSNTRRNILYKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEI-QAEVQEKESDA 723
The following BLAST results are available for this feature:
BLAST of TCONS_00018676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CE1044.806e-1841.67Centrosomal protein of 104 kDa OS=Homo sapiens GN=... [more]
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