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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018678 ID=TCONS_00018678|Name=TCONS_00018678|organism=Clytia hemisphaerica|type=transcript|length=1550bpRun BLAST on NCBI protein sequence of TCONS_00018678-protein >TCONS_00018678-protein ID=TCONS_00018678-protein|Name=TCONS_00018678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp MPKKLPFEVIHVSGHDEGYSGKELEVHSPTTRGWQSLRFCEYPQEIIFSLRun BLAST on NCBI transcript from alignment at sc0000304:166458..175852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018678 ID=TCONS_00018678|Name=TCONS_00018678|organism=Clytia hemisphaerica|type=transcript|length=9395bp|location=Sequence derived from alignment at sc0000304:166458..175852- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000304:166458..175852- >TCONS_00018678 ID=TCONS_00018678|Name=TCONS_00018678|organism=Clytia hemisphaerica|type=CDS|length=19782bp|location=Sequence derived from alignment at sc0000304:166458..175852- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018678 vs. Swiss-Prot (Human)
Match: CE104 (Centrosomal protein of 104 kDa OS=Homo sapiens GN=CEP104 PE=1 SV=1) HSP 1 Score: 303.523 bits (776), Expect = 5.762e-92 Identity = 177/444 (39.86%), Postives = 263/444 (59.23%), Query Frame = 2
Query: 56 MPKKLPFEVIHVSGHDEGYSGKELEVHSPTTRGWQSLRFCEYPQEIIFSLKEQCKITKIQVLSHQHNIGSKIEFFIGESKEQSL---RSCSFSRLGYVQLAPNAEANYQARELKSVTLNKDGIFVKILVHRNHINKLNVYNQVGLVAVNILGYQLSKEFEGQHPQEKTEDVVNFYMNQVTSEDEVVNTSKLNASPRYEYGKEISPYDDLAFDMYQDSETAQLIRKLDEKKHQAIIEERYDYAKKLKEAISDLHKVGQKLGKFEVEKRRAVELEDFDTAKKKKLQSDEYRVHVYKQLDIRDLLQIPKFEK--DHVLQNI--TNVPKQPSTVQTLSPKIDSSITTNTKSEPEEVRLPPXXXXXXXXXXXXXXXXXXXXXXARSPRQQ-VEENMSSVEAMPEINVSATYDIDECLSQSQNKNDERPLPSLNNRKSQGVIEEQENEND 1363
MP K+ F V+ SGH++G+S +EL +H+PT GW+S RFC++PQEI+ + E+C+I K+Q+L+HQ+ I SKIEF+I ES + ++ F RLGYV L N + +ARELKSV ++ G F+K++ H+NH+NK N+YNQV LVA+NI+G +F + E +++ Y+ SED + + S +Y ISP DDLAFDMYQD E AQ+IRKLDE+K +A+ +ERYDYAKKLK+AI+DL KVG++LG++EVEKR AVE ED+D AK+KK Q ++YR VY+QL++ LL + D LQ + + P + +L P+++ T N +EP P + + SP+ V+ + + + P+IN + DERPLP++ + V+E + + D
Sbjct: 1 MPHKIGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQEIVLQMVERCRIRKLQLLAHQYMISSKIEFYISESLPEYFAPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDAVGQFLKLIFHQNHVNKYNIYNQVALVAINIIGD--PADFSDESNTASREKLIDHYLGH-NSEDPALEGTYARKS---DY---ISPLDDLAFDMYQDPEVAQIIRKLDERKREAVQKERYDYAKKLKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAKEKKQQMEQYRAEVYEQLELHSLLDAELMRRPFDLPLQPLARSGSPCHQKPMPSL-PQLEERGTENQFAEPFLQEKPSSYSLTI------------------SPQHSAVDPLLPATDPHPKINAESL------------PYDERPLPAIRKHYGEAVVEPEMSNAD 404 The following BLAST results are available for this feature:
BLAST of TCONS_00018678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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