|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018735 ID=TCONS_00018735|Name=TCONS_00018735|organism=Clytia hemisphaerica|type=transcript|length=489bp
gttttccaTTCTTTTGGAGGAGGAACAGGATCTGGTTTCACATCTCTTCT
CATGGAAGCTTTGTCTGTTGAGTACGGTAAAAAGTCCAAATTGGAATTCG
CAATCTATCCAGCACCACAAATCTTCACAGCTGTCGTAGAACCTTACAAT
GCGATTCTGATGACGCATACAACGTTGGAACATACCGATTGTACATTCAT
GGTTGACAATGAAGCCATTTACGATATCTGTCATCGTAACATTTGTATTG
AACGTCCAACTTATACTAACTTGAACCGTTTGATTGGTCAAATCGTCTCC
TCTGTCACTGCTTCTTTGAGATTCGATGGTGCCTTGAATGTTGATTTAAA
CGAATTTCAAACCAATTTGGTGCCATATCCTAGAATCCATTTTCCATTGG
CTACTTATGCTCCATTGATGTCTGCCGAAAAAGCATTCCATGAGCAAGTT
TCTGTAGAAATGATAACTAAACAATGCTTCGAACCTGCC Run BLAST on NCBI transcript from alignment at sc0000305:44889..47034- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018735 ID=TCONS_00018735|Name=TCONS_00018735|organism=Clytia hemisphaerica|type=transcript|length=2146bp|location=Sequence derived from alignment at sc0000305:44889..47034- (Clytia hemisphaerica)
GTTTTCCATTCTTTTGGAGGAGGAACAGGATCTGGTTTCACATCTCTTCT
CATGGAAGCTTTGTCTGTTGAGTACGGTAAAAAGTCCAAATTGGAATTCG
CAATCTATCCAGCACCACAAATCTTCACAGCTGTCGTAGAACCTTACAAT
GCGATTCTGATGACGCATACAACGTTGGAACATACCGATTGTACATTCAT
GGTTGACAATGAAGCCATTTACGATATCTGTCATCGTAACATTTGTATTG
AACGTCCAACTTATACTAACTTGAACCGTTTGATTGGTCAAATCGTCTCC
TCTGTCACTGCTTCTTTGAGATTCGATGGTGCCTTGAATGTTGATTTAAA
CGAATTTCAAACCAATTTGGTGCCATATCCTAGAATCCATTTTCCATTGG
CTACTTATGCTCCATTGATGTCTGCCGAAAAAGCATTCCATGAGCAAGTA
TGTTTTTGCGTAATATTTCATAGATGCATAGTTCGTATAAAAAACTCCGG
TCTGGAGGGATAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGG
TCGTTAACCTTTAATAAAACACTTTTGTTATTTTTTCTAAAGAACGCGTC
ATCTCTGTTACTTTTAATGACCAATTAGTGAAGTATCTTATAAAAACTCC
AGAACATCCCGGTCTGGAAGCCTTTTGTTCCTTTATATTGTTTCAAACTT
AGACTTGCGTTTAGAAATTAGTTTTTTTTTCTCACTTTCTGATCATGTGA
TTAACTTTTGAACCAATGCCGATAGAAGTATTTGATAACGTGATAAAGAA
CTTAGCAAATCGATTTTTATAATCGTTATTAAAGTTAACAAATAGTTACA
GCAACAGTTCAGACCAGTACTTTTTATACGGGTTTTGATAAATTACTATG
CTGTTTCCTCGATTCAGGAACATAAAGGGAGTCTTGTTTTCTTATCATAT
CCTAATACCGCTTACTATAGAGTACATATTGTAAGTAGATAGCCCAGCAA
TCCAACACTTTTAGACAGTTTTCGATTGTTTGCACAGGGTCCACGACCAG
CCGGCTCGAATATCCATGAACATGAGCGGAGCATCGGACGGGGCAGGGAT
GCGAACTGAAACCTTTAGTTTCAGCAGCTGGCTCTTTGATGAGCTTAACT
AACTGACAGAGCTAATCCGGGGGGGGGGGGGTTACTAAAGCAAAGCTGGT
TACGGATATGCGCCGCTGGTCAGGGTACCTTTTTCACCTCCATGAGTCCC
AGGTAGGGTCGCAAAAACACCAAAATAGAAAAATTAGTCCCTCGTAGGGT
GTCTATTTTGGAAAATTTGGGTAAAAAGTAGAAAATTTTGCAATTTCAGT
CCCATTCAGGGTCACTTTTCCCTCAAATTTTGGCAATTTCTTTCAAAAAA
CCAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCATCCCCGTC
AGTCGGCAAGGGTAGTTACCCCCGGGGGAGCTAATCATCATACAACTCGA
TTGTCCATCTTAAGTCGAGTTAAAACTTTCAGAGCCTACTTGAATACCCA
GTTCTATTTAATTGCTGTGACCATAGTGATTTTTTTTATATTTTGCACGT
ACAAAAATACTACAACCTACCTGATGTAGCCCTCAAACTTAAGCATTTCA
TACATTTTCTGTTACGTTAACCATGTTATGGTTGGCATTCTCGAATCTAA
AAATTCTAAAATCTTAATGAAAGAATTTGAGGAAAAAGAAAATGAAGACT
TCTGCGAAGAAAAGAATATCGACTTTAAAATCTCATTTCAGCGAAGAAAA
TACATTCTGAAAATATTTTTGCCCTAGATAGGGTATCTTTTCCCGAATCA
AAAACATATTTTCGGAAAATTTTTGTAAAAACTACTTCTCTCAAAATCTC
AAGAAAAGTGATTTTTGGCAAATGTTTCATGCACATTTTTTAAAGAAAAA
TAGTCTGTCCATACACCAATTAAGAAAACCATTCCGGAAAAAAAAATTCT
ACTTTCAAAAAAATTTACTTTTAGAGCCTTCAATATAAGATGGGTTTGTG
TAGAATTCTGAATTTTTCAAGGCTACCTGACTGAAATTTTATTTATCATC
ACAGGTTTCTGTAGAAATGATAACTAAACAATGCTTCGAACCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018735-exon-sc0000305-1575043694:46588..47034 | TCONS_00018735-exon-sc0000305-1575043694:46588..47034 | Clytia hemisphaerica | exon |
| TCONS_00018735-exon-sc0000305-1575043694:44889..44930 | TCONS_00018735-exon-sc0000305-1575043694:44889..44930 | Clytia hemisphaerica | exon |
| TCONS_00018735-exon-sc0000305-1510915933:46588..47034 | TCONS_00018735-exon-sc0000305-1510915933:46588..47034 | Clytia hemisphaerica | exon |
| TCONS_00018735-exon-sc0000305-1510915933:44889..44930 | TCONS_00018735-exon-sc0000305-1510915933:44889..44930 | Clytia hemisphaerica | exon |
| TCONS_00018735-exon-sc0000305-1491911889:46588..47034 | TCONS_00018735-exon-sc0000305-1491911889:46588..47034 | Clytia hemisphaerica | exon |
| TCONS_00018735-exon-sc0000305-1491911889:44889..44930 | TCONS_00018735-exon-sc0000305-1491911889:44889..44930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000305 | supercontig | sc0000305:44889..47034 - |
Blast
BLAST of TCONS_00018735 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3) HSP 1 Score: 271.937 bits (694), Expect = 1.564e-89 Identity = 140/163 (85.89%), Postives = 151/163 (92.64%), Query Frame = 1
Query: 1 VFHXXXXXXXXXXXXLLMEALSVEYGKKSKLEFAIYPAPQIFTAVVEPYNAILMTHTTLEHTDCTFMVDNEAIYDICHRNICIERPTYTNLNRLIGQIVSSVTASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPLMSAEKAFHEQVSVEMITKQCFEPA 489
+FHSFGGGTGSGF SLLME LSV+YGKKSKLEFAIYPAPQ+ TAVVEPYN+IL THTTLEH+DC FMVDNEAIYDIC RN+ IERPTYTNLNRLIGQIVSS+TASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP++SAEKA+HEQ+SV IT CFEPA
Sbjct: 137 IFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
The following BLAST results are available for this feature:
|
