TCONS_00018747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018747
Unique NameTCONS_00018747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018747 ID=TCONS_00018747|Name=TCONS_00018747|organism=Clytia hemisphaerica|type=transcript|length=576bp
GAAAtgttaatttaaaaaaactgtGATGAAATTTGTTGGTCAGTGTTTCA
AAGAAAGAAATGGGCAAGAAAAAAGgaAAGAAGTATGATCCAAACTTCAA
AGGACCAATCAAGAACAGgggTTGCACTGATGTTATTTGTTGTGTCATTT
TTGGTGTTTACATGCTCGGCATGATCGTCATTGGGGTTGTTGCTTATGTC
GAGGGAGATCCAAAAAGGTTGCTTTATGCTACTGATTCAAATGgaaaagt
TTGTGGAGCAGACATACCTGACAAGCCGTATTTGTATTTCTTTGATATGA
CCAAATGTTTAACAAAAGGAGCAAGTGACCCATTAGCCTTCGTAAAGCAA
GGATTCACCTGCCCGACACCACAAGTATGTGTAAAAGAATGTCCAAATTT
TTATAAAGCTGGTATTGACAAATCCATTCCAATCAAAGATTTGGTCTGTA
AACCCTCAGTCAATGTAACGGCACAGagtGATCTTTTTAAGCTTGTACAA
AATGGAGATTGTGCACCatattatattgagacagaagAAGTTTTCTACCG
CTGTATCCCCAAAGTAGCAGCTGANG
Run BLAST on NCBI

transcript from alignment at sc0000305:325192..330899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018747 ID=TCONS_00018747|Name=TCONS_00018747|organism=Clytia hemisphaerica|type=transcript|length=5708bp|location=Sequence derived from alignment at sc0000305:325192..330899- (Clytia hemisphaerica)
GAAATGTTAATTTAAAAAAACTGTGATGAAATTTGTTGGTCAGTGTTTCA
AAGAAAGAAATGGGCAAGAAAAAAGGTGAATTTGCTCATGATATATCTAG
ATTATGATAAAGATGATAGCCTGATCTGGCCTGAAAGTGTTGAATGAGAG
TTTTATCGTTTATTTTTCTTTGTTTTCAGGAAAGAAGTATGATCCAAACT
TCAAAGGACCAATCAAGAACAGGTATGATTCTTTAGGTTATTTTTATTAT
AATATTGCATTATACATAGTATTTTAATTTTTGACACAACCATGCAGTCT
GTAAAAAAACAGTTGATCAAAATATTTGAATGAATTTTATAGAAATATTT
TCAATAGACACGGTGTTAAGGACAGTTAAGGAAAGTGAAGACTTTATTGT
CCTTTTTTTATTCTAAATTCAATTTTTTTTTTAATTTTAGGGGTTGCACT
GATGTTATTTGTTGTGTCATTTTTGGTGTTTACATGCTCGGCATGATCGT
CATTGGGGTTGTTGGTTAGTTGATTTTCATTTTCACACAGTTTGAATTAT
TTTGAGGCTTCATATTATATAATACATTAAATTATTCATCTTTCAAGTAC
TGTGCTAAAACTCTTGGTTTGTTGAGTGAAATTAACCTCAAGTTAAATTG
TTTCATGGATACTATTTTTAAAGTAGGCCTATGCAAACCCTTTCTAGCAG
AAGGATGCTAAGTAATTTTATGCTTCATAAGCCCTTTAATTGCATATTTC
TTTCAGCTTATGTCGAGGGAGATCCAAAAAGGTTGCTTTATGCTACTGAT
TCAAATGGTAAGGTTTTCAGATTCTCATTCTTTATGACATTCCTTTGTCC
TATATCCAGCTATATCATTTGTCATTTTTATTTTTTTTGCCATAAAATCA
TGCTTTTCAATAAATTTTGTTTTGTTTGATGATATATCTAACAGAATTGC
CATTCTCATTAAAATAATATTTTCTTTTTATTTCAGGAAAAGTTTGTGGA
GCAGACATGTAAGGATTGTACATTTTCTTGATAAACACACCACCCGAATG
GCTAGCTATCAAAACTTGTGGAACCCTTTTACTATCAACATCTTTCTTGA
ACCTAACTTATTTATAATTGTAAAAACTTGAATACTCAAGGGTTTCCTAT
GTAATCGTTTGTCTTTTCATTTTAGACCTGACAAGCCGTATTTGTATTTC
TTTGATATGACCAAATGTTTAACAAAAGGAGCAAGTGACCCATTAGCCTT
CGTAAAGCAAGGATTCACCTGCCCGACACCACAAGTGATTTGATAATTAT
TTTCCTTCCATTTGACTGCTTTTATGCATAAAACAATCTACAGAGATACG
ATTGGGAAACAGCATCAGAACCATTCACCTCCCTCTCCTCTTTTCTATTA
ATTTGTCCTGATTTAAGTNGATTTGATAATTATTTTCCTTCCATTTGACT
GCTTTTATGCATAAAACTATCTACAGAGATACGATTGGGAAACAGCATCA
GAACCATTCACCTCCCTCTCCTCTTTTCTATTAATTTGATTTTTTAAGCG
AAATTTCAACTACTTTTCCTGAACTAAAGCAAGAAAGCAAAAAATTTGCT
TCAATTTTAGGTATGTGTAAAAGAATGTCCAAATTTTTATAAAGCTGGTA
TTGACAAATCCATTCCAATCAAAGATTTGGTCTGTAAACCCTCAGTCAAT
GTAACGGCACAGGTATTATTTATTTTATCGCTAAAAAGCTTTCAGTCAAT
TTTATATTTAATTAACCCCTGGCAGCTGCAATTTTTTTTATAATTGGGTC
AGATTAATCTCGTATCAAGGCTTGTTTAAACTTTGTTTTGCCAGGGGGGG
GGTCAAGCAGTTAGTACAAGACATNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTAATTCCCACGTCCCAAAATGACAAAAATTTC
TTTTGCATTTGAAACGAAATTTCTAGTGATCTTCAGTGGCTAGTAATTAG
CCTTTAAAGTGTGTGAAATATTGTGGCTAATTTTTTGAGTGGCTAATTCT
ACCAACTAGTTTCAAAAAGGTGTAGCAGCTTCAATTTAAAAGATCAGTCA
CCCAAATTTTGCACTGGTTATATTGAATAATAAAGTTTTGAGATTATGTG
AAAAAATGAGGGCTATTGATCCTTGAAAGTGAAATAATGTGGTTAATAGA
CTTAAAATGCACCCAGAGACAAAAGTATTGAATAAAAAAGTATAATCGTG
GAATTTGAATTTTTTTTGCTTGAGATGATACTTATTGAATGGTTTTGTTT
TCATTTTCTAAGGATACAGCATCAGAAATGTGAATTTAAGTGGCTAAATT
CTCCTTGCAATTGTGATGTTTGACTTGAGGAAAAACGTTTCAACAGGCAT
TTTACGTACTGACTTTATTCACCATGTAAAAAAGCTGTAGTTATGAAATT
TTGGGATATTGTGCTAAATATGTGGCTAATTCAATAAGAAACACTTTTTG
TAATACTTCCTGTATGATTTTGTGTTAAAATGTGTGGTTATTTGCATACT
TAAGTAACTAGTAGTTTTTCTTCATTTTAAGCCTAATTTATAGATTTTCC
CTGTCATTTATTGTCACAATTAATCACATATCAATTTTAAAGAAAGGCAT
GCAAGTTATCAAAAGAAAGCCAATGACATTTTTGAAAGTTTCAACAAGGT
TATTTTTTTCACTCACGATGTGAAAAAATGTGGGTAGCCTTTTTAACAAT
CCAGAAATCTTAGTAAGTCTTTTTAGCCACGTAGAATCACAGGGCAACTA
TTAGTTGATACTTTTGAATTCAGAAAGTGAAAATTTGATCATCAAGCTAT
AGTCTCATACAATTCAGGTCTTTGGAATTCTTTTGTGAATGGGTGTGGCT
ACCATTTAAAATAAGGACCTTTTTTCAAAAAAGTGTTTTTTATTAGCCGC
ATGATTTCACAAATTAGTAAGTAAATACTTCAAATATGTTCTATTTTTTA
CTAATTTTTCAAGAACACCAGATTCATTATTTTCATCACTAGTCTTTATT
TGCTATATTGTTTTTTTAATTATTGAAAAAATATCAATACAGCGAGTTCG
AGCCACAATTTTTCACATTTACCACTTGAAATTCTTTCACATAAGTATAT
CTTAGAAAAATTCAATCTGCGATCTTCAACTTTGAACCAGTTCCAAATAT
GGATATTCAATATGTGCTTAATTGAGGCTATTTCAAAAAATGATAGAAAA
AGGGTAATATTAGCCTCAAAACTACACATTTTGATAAAAAAGGAATTCCA
GTGAATTCCTAGAGTCCTAATCCACAATCCTGTATTTTCCCCTCTCTCAT
GAAACATTTGCTAAGAAGTTACAAGACATTATCCAAAATCAACAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAACTTT
TACAATTTCAAAATCGATCTGACTTTTTTCTTTTATTTATCAATCTATAG
TTAGGGAATTCCCCTGATATAGTGTTTAACTAAAGGGTAATACAAAACAA
ACTCCAAAGGGGAAGGCTTAAATGTCTTAGGTTCTTTGATTTCTCTTATG
GAGGGGGATTTTCCTGATTGCTTTTAGTATTTATTTTTAATATTTTTCTA
GAAAAGGTAAAAAAGTAGCACTTAGTATTCATTTGTACTAACTGTTATCC
TAGATTTTTTACTTGACACCACCCTAGCAGTCACTTAGTACCATCAAGTA
CTAACTGATTTTTGAAAATTTTGTAGGTATACCACCACGGTACTAACCGG
CATGATGTCTTGTACTAACTGCTTGACCCCCCCCTGGTTTTGCATCCATT
TGGTCATAGTGTAGTTATTTGTTAATTCCTGATTAAAGTATCGTTATGAA
TAGTACACTTTCAATAATTGCACTTGGTTTGGCTGCTTTTTGATGACTTC
TCCCAAATTGCAAATTTCTTTTTCAGAGTGATCTTTTTAAGCTTGTACAA
AATGGAGATTGTGCACCATATTATATTGAGACAGAAGAAGGTTTGTTACA
TTTTCTTGTTAGATTGTTCTAATTTTTGGCTGAGCATTGAAATTTTCAGT
TATTTTAAATGTTATTTTAAAAAGAATCTTCCCGTGTCCAGCCATGTTCT
CCATGATGTTCTTATTTTGTTAAACTTCAGTTTGAATTTTCTTGTATACT
GGTTTCAAATGAAAAAGCTAGTCCAAAAATCTATTCCATCAAAAGTTTCA
GTAATTCACCCTCAAGATTATACTCAAGAACAAAATAGAAGATTATACAA
TAATTCTGATTTTTATTCTCAGTTTTCTACCGCTGTATCCCCAAAGTAGC
AGCTGANG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010492XLOC_010492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018747-exon-sc0000305-1575043694:330825..330899TCONS_00018747-exon-sc0000305-1575043694:330825..330899Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:330678..330720TCONS_00018747-exon-sc0000305-1575043694:330678..330720Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:330386..330459TCONS_00018747-exon-sc0000305-1575043694:330386..330459Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:330093..330143TCONS_00018747-exon-sc0000305-1575043694:330093..330143Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:329892..329913TCONS_00018747-exon-sc0000305-1575043694:329892..329913Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:329616..329724TCONS_00018747-exon-sc0000305-1575043694:329616..329724Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:329188..329289TCONS_00018747-exon-sc0000305-1575043694:329188..329289Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:325510..325573TCONS_00018747-exon-sc0000305-1575043694:325510..325573Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1575043694:325192..325227TCONS_00018747-exon-sc0000305-1575043694:325192..325227Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:330825..330899TCONS_00018747-exon-sc0000305-1510915933:330825..330899Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:330678..330720TCONS_00018747-exon-sc0000305-1510915933:330678..330720Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:330386..330459TCONS_00018747-exon-sc0000305-1510915933:330386..330459Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:330093..330143TCONS_00018747-exon-sc0000305-1510915933:330093..330143Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:329892..329913TCONS_00018747-exon-sc0000305-1510915933:329892..329913Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:329616..329724TCONS_00018747-exon-sc0000305-1510915933:329616..329724Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:329188..329289TCONS_00018747-exon-sc0000305-1510915933:329188..329289Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:325510..325573TCONS_00018747-exon-sc0000305-1510915933:325510..325573Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1510915933:325192..325227TCONS_00018747-exon-sc0000305-1510915933:325192..325227Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:330825..330899TCONS_00018747-exon-sc0000305-1491911889:330825..330899Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:330678..330720TCONS_00018747-exon-sc0000305-1491911889:330678..330720Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:330386..330459TCONS_00018747-exon-sc0000305-1491911889:330386..330459Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:330093..330143TCONS_00018747-exon-sc0000305-1491911889:330093..330143Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:329892..329913TCONS_00018747-exon-sc0000305-1491911889:329892..329913Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:329616..329724TCONS_00018747-exon-sc0000305-1491911889:329616..329724Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:329188..329289TCONS_00018747-exon-sc0000305-1491911889:329188..329289Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:325510..325573TCONS_00018747-exon-sc0000305-1491911889:325510..325573Clytia hemisphaericaexon
TCONS_00018747-exon-sc0000305-1491911889:325192..325227TCONS_00018747-exon-sc0000305-1491911889:325192..325227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:325192..330899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.590889	1.71174	0	5.48495	0.836588	0	0.598166	0	0	2.1523	5.44382	0	0	0	0	0	0	0.822393	0	0	0
Blast
[Close]
BLAST of TCONS_00018747 vs. Swiss-Prot (Human)
Match: CTL2 (Choline transporter-like protein 2 OS=Homo sapiens GN=SLC44A2 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.352e-32
Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 3 
Query:   84 YDPNFKGPIKNRGCTDVICCVIFGVYMLGMIVIGVVAYVEGDPKRLLYATDSNGKVC---GADIPDKPYLYFFDMTKCLTKGASDPLAFVKQGFTCPTPQVCVKECPNFY----KAGIDKSIPIKDLVCKPSVNVTAQSDLFKLVQNGDCAPYYIETEEVFYRCIPKVAA 572
            YDP FKGPI NRGCTD+ICCV   + ++G + +G++A+  GDP++++Y TDS G+ C   G    +KPYL++F++ KC     + PL  ++  F CPTPQ+CV++CP+ Y     A   +        C P         + +++Q+GDC    I ++ +  RC P + A
Sbjct:   18 YDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVKC-----ASPLVLLE--FQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCVPGFK--NNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHA 178
The following BLAST results are available for this feature:
BLAST of TCONS_00018747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTL21.352e-3237.06Choline transporter-like protein 2 OS=Homo sapiens... [more]
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