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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018773 ID=TCONS_00018773|Name=TCONS_00018773|organism=Clytia hemisphaerica|type=transcript|length=2972bpRun BLAST on NCBI protein sequence of TCONS_00018773-protein >TCONS_00018773-protein ID=TCONS_00018773-protein|Name=TCONS_00018773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp MTGVDVKRFLQKWDDSSKQSRVEILQDFNKKHCNKTAPELDQLLGNCASLRun BLAST on NCBI transcript from alignment at sc0000306:156640..166599+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018773 ID=TCONS_00018773|Name=TCONS_00018773|organism=Clytia hemisphaerica|type=transcript|length=9960bp|location=Sequence derived from alignment at sc0000306:156640..166599+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000306:156640..166599+ >TCONS_00018773 ID=TCONS_00018773|Name=TCONS_00018773|organism=Clytia hemisphaerica|type=CDS|length=14076bp|location=Sequence derived from alignment at sc0000306:156640..166599+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018773 vs. Swiss-Prot (Human)
Match: CA228 (Uncharacterized protein C1orf228 OS=Homo sapiens GN=C1orf228 PE=2 SV=2) HSP 1 Score: 274.248 bits (700), Expect = 1.587e-81 Identity = 166/387 (42.89%), Postives = 251/387 (64.86%), Query Frame = 2
Query: 1565 FLQKWDDSSKQSRVEILQDFNKKHCNKTAPELDQLLGNCASLFFTRITAWLRLSYMNGSYLDVQLKTLNVFLSASSGQKFLSEFXXXXXXXXXXXXXXXPKISEVHKELTLKLLNNIASTGRKYKELVCECYGVRAVCECLGKSQTLGCQEACRLIIINLSNGNPRYLQQLYKAMIILLKSASPEAQRIAAQALQKIQPSLDTASLNIVDPTLMLLSSLHIEVQYEGCVLVTMLIQYHSIRQDILVGLVALLKPS-------QMELLEQSDV--VSAQVPVFIQQAVAAKLIGVLSKEDFDIARNFLELDCITSLLFAMSNEKYADSQKQAGITLQYFIHTFQEVELGVREAIGQSFFFEYMNDPSDFYLKMTSVQIDILKGSKVKI 2698
FLQ+WD++ K +R IL F + + KTAPEL+Q ASLF R+T LR++YM S L+ L+++ +FLSA S ++L EF+EVGG+LTLLEI+GL KI E K+ ++KLL IA++GR YKEL+CE YGVR++ E L KS++ QE ++++ +L +GNP+Y Q+YK +I LL SP+AQ+++ Q L+ QP + T +IVD L +L ++H+EVQYE L+ L+ Y +RQ +L GLVALL PS Q ++L V ++ +P+F+QQA AAK IGVL++ D IA L L + L+ AM N +++SQ+ A +TL+ F+ F V VR+ +G+ + ++++ D Y+K+ S+Q DIL + V +
Sbjct: 16 FLQEWDNAGKVARSHILDKFIETNQGKTAPELEQEFSQGASLFLVRLTTSLRITYMTDSCLEKLLRSIGIFLSAVSSNRYLIEFLEVGGVLTLLEILGLEKIKEEAKKESVKLLQVIANSGRTYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLVHGNPKYQNQVYKGLIALLPCESPKAQQLSLQTLRTAQPIIGTTHPSIVDCVLKVLGTMHLEVQYEAIELIKDLVGY-DVRQALLKGLVALLIPSVKEISKLQAKILSDPSVLQLTPSLPMFLQQAAAAKAIGVLARNDMSIAEELLYLRVVRGLMAAMGNTDHSNSQRLASLTLECFVQMFPLVAEHVRKCMGEELYQLFLSNAEDLYMKIDSIQADILAANTVNV 401 The following BLAST results are available for this feature:
BLAST of TCONS_00018773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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