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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018864 ID=TCONS_00018864|Name=TCONS_00018864|organism=Clytia hemisphaerica|type=transcript|length=2297bp
TTTTTGTataacgaaaaatattttgaacattttatgAGATTTTACATAAC
GATTAAGTCTCGCAGTCTTTATTTACAAGTTGTGTCCATAAGGTGACACG
AAAGTTCTCAACTAACATAAAATTATGTAACATTTTAAAATAGTTATAAA
TTTTGCTTTCATCCTctaagacacccccttctcacagacccggtagaatt
ttttcagccagtgaggATAAAAATAACGATCAAAAACATGATGGGGGAAT
GATATTTCCATGTTTTTTTTGGGCCGGGGatttaaatttctttgttttca
agtcagaaaacgcactgaagatgagaaaaatcgcataatattttgcagta
aggattgatttatttgattaGTTTCAGtgtggacaaaaattggagtataa
ttttccactggggacgatattttggccaatctttccagtgggaagAATTA
CCAGTGGGTGTGTCagaagggggtgttctaagattGCATCCTCTGAGACT
TCAACAAGAAATTACAAGATAATACAATTTGTAATCTAAAACAGATTTAT
GATTGATTTATCGATAATAGGCGATAGTTTAAAACGATTTCGATCTCGAG
TAACACGTTTCGTTCAGCCAGCACATAGATAGCTGAGCCGGTTAGCCGTG
GAGCCCATGAAAAAATAATGGCTCCCTAGATAACTGGACGATCCatgtaa
aatataaattttgtacacccctgtctctcataaaaaattctattgttcct
aagTCGAAAAATCGGGTAAGGATGGTTTTGAGTGCagatttttacattga
attttgaatggggatgaaatcaaagtcaatttttcagtgAAGCTGAAATT
GTAGAGTATtcttcccaccggggacgagattttggccgaattttccagtg
gggctgaggtCTCAGCGggcctgtgacacaggggtgtttttgtATATCTG
ATCATCATCGCGTGTGAGGGTCATACAAAGACAGTGGTTGACAGGATATC
TTGCGACAAACTTGAAATATCCaaactactttcactttcgcttgtTGTCG
TAAACAATTGCTTCTTTTCGAATGAATTTGCTGACATGGATGAAGAGGGT
TGCATCTGAGTTGCTGAGTCAGCTTTAATGACGCCATCAAGAGAATTCGT
TTGTGAGGAGATGAAAAATAATTGGTTGTTAAATTTCCAGAAGATGTGAT
GTCGGCAGATATAGATGAATGGATCAAGAATGGTTTGCAATAAAACCAGA
CCTTCAACCACCAAAGCTGCCGTTGAACCATTACGGGATTGGTAAAGTGG
ATTTCGTTTTTGCACAAGAATGAAGGACGCGAACGGGATATTAGAAAAAA
CATGAAGAACGATCAAAATACTGACCGTTGACGTCATTTTACCCGATAAT
ACCTTTTCCCGGAACGGGATTTCTTCATCCGATATATTCTGTTTTAATAA
GCGGATAACATAACTTGCGATTGCCAGAACAAGAAAATCTAAGATGGTCA
TTACAgctgctgacgtcatcagaaaTCCAACATGGCCGGGTTCGAATAAG
AGAATGGGAACAAGTGATAAAAGCCAGACCAGAACAAGGTTCATGATGAT
AAGATTGGTTTTGAATTCTTGGTGACATTCTGGTAAGTTCATTGAAATCA
GACGTTCGATAGCCAACAGAACAAGATGGAAATACTGCACTACGAAACAA
GAACTTGTTGCAATATTCAACCCTTTGAAACTGGTGTTTGTGATGGTGCA
ATCACCGCAAATCATCAAAGCCAGGAAATGAAAGACACTACCAAGACTGA
ACAACAAATTCACCAACATCATGCTACTTAAGATAAGCTCGCTTCCCTTT
TGGTGATGATTGACTTTATTTCTTTGGTGTTTGTGTACCAAGTATATGGA
AAGTAAAAAGTTGAACCCAATCGAACAGACAGCTTGCACGCAATTCAAAA
TAGTCATGAATTTGAACGTGTCTGTGAAGCCTTCATCCATTCTGCTATAT
GTCTTTACAATTTGCTAAGACGATTGGTTCTTTGTTTCTCTCCGGCTCTC
CTTTATCAGTAGAAAGTTTTCGAATAGCATTTTCCGTTTTATGGAGAGTT
GATTGTCTTATGAACTTCGGTTGATTTTTAGTTCAGCttcttttaattat
caagatcACCTCTTTATTTTACTAACCAATATCGTTTTAAaattcgtttt
ctaaatttcactcaaaaacattacaaaaaaaaataatgaatgaaaaaaaa
atatttcggaaCATGCCCTTGAACGGTTTTATCAAAAAGCACCCCTG Run BLAST on NCBI protein sequence of TCONS_00018864-protein >TCONS_00018864-protein ID=TCONS_00018864-protein|Name=TCONS_00018864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MDEGFTDTFKFMTILNCVQAVCSIGFNFLLSIYLVHKHQRNKVNHHQKGS
ELILSSMMLVNLLFSLGSVFHFLALMICGDCTITNTSFKGLNIATSSCFV
VQYFHLVLLAIERLISMNLPECHQEFKTNLIIMNLVLVWLLSLVPILLFE
PGHVGFLMTSAAVMTILDFLVLAIASYVIRLLKQNISDEEIPFREKVLSG
KMTSTVSILIVLHVFSNIPFASFILVQKRNPLYQSRNGSTAALVVEGLVL
LQTILDPFIYICRHHIFWKFNNQLFFISSQTNSLDGVIKADSATQMQPSS
SMSANSFEKKQLFTTTSESESSLDISSLSQDILSTTVFV Run BLAST on NCBI transcript from alignment at sc0000309:61893..64189 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018864 ID=TCONS_00018864|Name=TCONS_00018864|organism=Clytia hemisphaerica|type=transcript|length=2297bp|location=Sequence derived from alignment at sc0000309:61893..64189 (Clytia hemisphaerica)
CAGGGGTGCTTTTTGATAAAACCGTTCAAGGGCATGttccgaaatatttt
tttttcattcattatttttttttgtaatgtttttgagtgaaatttagaaa
acgaattTTAAAACGATATTGGTTAGTAAAATAAAGAGGTgatcttgata
attaaaagaaGCTGAACTAAAAATCAACCGAAGTTCATAAGACAATCAAC
TCTCCATAAAACGGAAAATGCTATTCGAAAACTTTCTACTGATAAAGGAG
AGCCGGAGAGAAACAAAGAACCAATCGTCTTAGCAAATTGTAAAGACATA
TAGCAGAATGGATGAAGGCTTCACAGACACGTTCAAATTCATGACTATTT
TGAATTGCGTGCAAGCTGTCTGTTCGATTGGGTTCAACTTTTTACTTTCC
ATATACTTGGTACACAAACACCAAAGAAATAAAGTCAATCATCACCAAAA
GGGAAGCGAGCTTATCTTAAGTAGCATGATGTTGGTGAATTTGTTGTTCA
GTCTTGGTAGTGTCTTTCATTTCCTGGCTTTGATGATTTGCGGTGATTGC
ACCATCACAAACACCAGTTTCAAAGGGTTGAATATTGCAACAAGTTCTTG
TTTCGTAGTGCAGTATTTCCATCTTGTTCTGTTGGCTATCGAACGTCTGA
TTTCAATGAACTTACCAGAATGTCACCAAGAATTCAAAACCAATCTTATC
ATCATGAACCTTGTTCTGGTCTGGCTTTTATCACTTGTTCCCATTCTCTT
ATTCGAACCCGGCCATGTTGGAtttctgatgacgtcagcagcTGTAATGA
CCATCTTAGATTTTCTTGTTCTGGCAATCGCAAGTTATGTTATCCGCTTA
TTAAAACAGAATATATCGGATGAAGAAATCCCGTTCCGGGAAAAGGTATT
ATCGGGTAAAATGACGTCAACGGTCAGTATTTTGATCGTTCTTCATGTTT
TTTCTAATATCCCGTTCGCGTCCTTCATTCTTGTGCAAAAACGAAATCCA
CTTTACCAATCCCGTAATGGTTCAACGGCAGCTTTGGTGGTTGAAGGTCT
GGTTTTATTGCAAACCATTCTTGATCCATTCATCTATATCTGCCGACATC
ACATCTTCTGGAAATTTAACAACCAATTATTTTTCATCTCCTCACAAACG
AATTCTCTTGATGGCGTCATTAAAGCTGACTCAGCAACTCAGATGCAACC
CTCTTCATCCATGTCAGCAAATTCATTCGAAAAGAAGCAATTGTTTACGA
CAacaagcgaaagtgaaagtagtttGGATATTTCAAGTTTGTCGCAAGAT
ATCCTGTCAACCACTGTCTTTGTATGACCCTCACACGCGATGATGATCAG
ATATacaaaaacacccctgtgtcacaggccCGCTGAGacctcagccccac
tggaaaattcggccaaaatctcgtccccggtgggaagaATACTCTACAAT
TTCAGCTTcactgaaaaattgactttgatttcatccccattcaaaattca
atgtaaaaatctGCACTCAAAACCATCCTTACCCGATTTTTCGActtagg
aacaatagaattttttatgagagacaggggtgtacaaaatttatatttta
catGGATCGTCCAGTTATCTAGGGAGCCATTATTTTTTCATGGGCTCCAC
GGCTAACCGGCTCAGCTATCTATGTGCTGGCTGAACGAAACGTGTTACTC
GAGATCGAAATCGTTTTAAACTATCGCCTATTATCGATAAATCAATCATA
AATCTGTTTTAGATTACAAATTGTATTATCTTGTAATTTCTTGTTGAAGT
CTCAGAGGATGCaatcttagaacacccccttctGACACACCCACTGGTAA
TTcttcccactggaaagattggccaaaatatcgtccccagtggaaaatta
tactccaatttttgtccacaCTGAAACtaatcaaataaatcaatccttac
tgcaaaatattatgcgatttttctcatcttcagtgcgttttctgacttga
aaacaaagaaatttaaatCCCCGGCCCAAAAAAAACATGGAAATATCATT
CCCCCATCATGTTTTTGATCGTTATTTTTATcctcactggctgaaaaaat
tctaccgggtctgtgagaagggggtgtcttagAGGATGAAAGCAAAATTT
ATAACTATTTTAAAATGTTACATAATTTTATGTTAGTTGAGAACTTTCGT
GTCACCTTATGGACACAACTTGTAAATAAAGACTGCGAGACTTAATCGTT
ATGTAAAATCTcataaaatgttcaaaatatttttcgttatACAAAAA Coding sequence (CDS) from alignment at sc0000309:61893..64189 >TCONS_00018864 ID=TCONS_00018864|Name=TCONS_00018864|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000309:61893..64189 (Clytia hemisphaerica)
ATGGATGAAGGCTTCACAGACACGTTCAAATTCATGACTATTTTGAATTG
CGTGCAAGCTGTCTGTTCGATTGGGTTCAACTTTTTACTTTCCATATACT
TGGTACACAAACACCAAAGAAATAAAGTCAATCATCACCAAAAGGGAAGC
GAGCTTATCTTAAGTAGCATGATGTTGGTGAATTTGTTGTTCAGTCTTGG
TAGTGTCTTTCATTTCCTGGCTTTGATGATTTGCGGTGATTGCACCATCA
CAAACACCAGTTTCAAAGGGTTGAATATTGCAACAAGTTCTTGTTTCGTA
GTGCAGTATTTCCATCTTGTTCTGTTGGCTATCGAACGTCTGATTTCAAT
GAACTTACCAGAATGTCACCAAGAATTCAAAACCAATCTTATCATCATGA
ACCTTGTTCTGGTCTGGCTTTTATCACTTGTTCCCATTCTCTTATTCGAA
CCCGGCCATGTTGGAtttctgatgacgtcagcagcTGTAATGACCATCTT
AGATTTTCTTGTTCTGGCAATCGCAAGTTATGTTATCCGCTTATTAAAAC
AGAATATATCGGATGAAGAAATCCCGTTCCGGGAAAAGGTATTATCGGGT
AAAATGACGTCAACGGTCAGTATTTTGATCGTTCTTCATGTTTTTTCTAA
TATCCCGTTCGCGTCCTTCATTCTTGTGCAAAAACGAAATCCACTTTACC
AATCCCGTAATGGTTCAACGGCAGCTTTGGTGGTTGAAGGTCTGGTTTTA
TTGCAAACCATTCTTGATCCATTCATCTATATCTGCCGACATCACATCTT
CTGGAAATTTAACAACCAATTATTTTTCATCTCCTCACAAACGAATTCTC
TTGATGGCGTCATTAAAGCTGACTCAGCAACTCAGATGCAACCCTCTTCA
TCCATGTCAGCAAATTCATTCGAAAAGAAGCAATTGTTTACGACAacaag
cgaaagtgaaagtagtttGGATATTTCAAGTTTGTCGCAAGATATCCTGT
CAACCACTGTCTTTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018864-exon-sc0000309-1491911889:61893..64189 | TCONS_00018864-exon-sc0000309-1491911889:61893..64189 | Clytia hemisphaerica | exon |
| TCONS_00018864-exon-sc0000309-1510915933:61893..64189 | TCONS_00018864-exon-sc0000309-1510915933:61893..64189 | Clytia hemisphaerica | exon |
| TCONS_00018864-exon-sc0000309-1575043694:61893..64189 | TCONS_00018864-exon-sc0000309-1575043694:61893..64189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:61893..64189 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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