TCONS_00018872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018872
Unique NameTCONS_00018872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018872 ID=TCONS_00018872|Name=TCONS_00018872|organism=Clytia hemisphaerica|type=transcript|length=544bp
TTTTATCCATTTTCACTCATTAATTTGATGCAAAagttaatttctttaaa
tttcttGACAAGGCAATTAGCGGAGTTCTCTCAAAAAACTCTTTAACGAA
GGTTAATTTTCGCAAAGATTACAATTTCCTCAAGTTAGCGAGAGTAAAGG
TTGtatttttcgcgatttttcgacctcgtgaAAATTTCTGCTCACAAAAG
TTTGTCTAAATTATATTCCGGTACTTTTAAAAAACCGATGCATCATACTG
TCCCTTTATAATATTCGACAAGTAAAAGTAGAGCATTTTATATTCATAAC
ATTCTGACTGATATAGAAATGACGAAATTTTTCAGCATGTTTTACCTACA
CACGACCAGATCCTGCAAACCGCTCCCTTTGAAGTTAAGCCGAAGACATC
CTTgtgttgttttgttgttttttcgaatTGTACATACTTGTGTTATTTAT
TGCGTGAAAATCCAGACATATTTTATATTACGTTTCAAAGTGCGAGTCTA
TTCCCTTTTTTTTGACTTCTTAGtaattactcttgtctcccgaa
Run BLAST on NCBI

transcript from alignment at sc0000309:214267..214810

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018872 ID=TCONS_00018872|Name=TCONS_00018872|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000309:214267..214810 (Clytia hemisphaerica)
ttcgggagacaagagtaattaCTAAGAAGTCAAAAAAAAGGGAATAGACT
CGCACTTTGAAACGTAATATAAAATATGTCTGGATTTTCACGCAATAAAT
AACACAAGTATGTACAattcgaaaaaacaacaaaacaacacAAGGATGTC
TTCGGCTTAACTTCAAAGGGAGCGGTTTGCAGGATCTGGTCGTGTGTAGG
TAAAACATGCTGAAAAATTTCGTCATTTCTATATCAGTCAGAATGTTATG
AATATAAAATGCTCTACTTTTACTTGTCGAATATTATAAAGGGACAGTAT
GATGCATCGGTTTTTTAAAAGTACCGGAATATAATTTAGACAAACTTTTG
TGAGCAGAAATTTtcacgaggtcgaaaaatcgcgaaaaataCAACCTTTA
CTCTCGCTAACTTGAGGAAATTGTAATCTTTGCGAAAATTAACCTTCGTT
AAAGAGTTTTTTGAGAGAACTCCGCTAATTGCCTTGTCaagaaatttaaa
gaaattaactTTTGCATCAAATTAATGAGTGAAAATGGATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010571XLOC_010571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018872-exon-sc0000309-1491911889:214267..214810TCONS_00018872-exon-sc0000309-1491911889:214267..214810Clytia hemisphaericaexon
TCONS_00018872-exon-sc0000309-1510915933:214267..214810TCONS_00018872-exon-sc0000309-1510915933:214267..214810Clytia hemisphaericaexon
TCONS_00018872-exon-sc0000309-1575043694:214267..214810TCONS_00018872-exon-sc0000309-1575043694:214267..214810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:214267..214810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.77784	8.05528	8.15385	8.56384	3.14198	2.8214	1.63387	1.27468	0.178486	0.221084	0.107295	0.141063	0.493033	0.365728	0.481085	0.838952	0.636012	0.733378	0	0.706829	0.102394	0.749161	2.30712	2.53908	1.70556	1.31922	1.59737	0.774887	1.0579	1.1976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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