TCONS_00018918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018918
Unique NameTCONS_00018918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018918 ID=TCONS_00018918|Name=TCONS_00018918|organism=Clytia hemisphaerica|type=transcript|length=1722bp
GTCAGTAGCAGTTCGCGTGGTTGGACTCTTCAACTCTTTTCTGCTGGAAC
TCCTCCACTTCTTCgccaaaaattttagattacaAACGATCCATGGGCTC
TAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCAAATCCAAA
AATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGAATTTATCA
TCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAATGGAAAAT
GCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTCAACTTCAA
ATTCATCTACAGCTTATGACGATTTCATTCAAGACTTTCTATGGTTGGAT
AGATGTTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTA
TTTTCGCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttct
ttcttgcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTA
AAAATGGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAA
ACTTAAAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGT
TTCGTGCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTT
CCAAAACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGC
CATTCGATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAA
GAAATCAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGA
ATCTCGCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACAT
TTACTTCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAG
AATAATATGCGATCGAACGTTAACGAACAGCACCTTATTTCAtatattca
tattggaagttctAAGAGCATCCACATCATCTACGTTCCAAGATATTTAT
TCGAACTCTTCTAAAACGCTCATGACAAGCAGTAAATTTAAGCTGACGCC
AGCCAAATGCGTCAAGAACCTGTCAGTTGGTTAAGTGACTTGTCGAAGAC
ATGAGTGACACTACGATATTTATTTTTCGAGCACATAGTCGCGAATACTT
TACCTTCCTTCTGAGTTTAGGGAATCTTGGAATAGATGACCGGGGTATAC
CTGAGAAGAATAAGTACCAGGTATGTGAGCGCATGTAAAGAGGCAAGTGC
CGTAAAACCAGAGAAATCGTtgatatcccccgtcaacgcatCTATCAGTT
TATTAATAGCGTAAGGGGTCAGATAAGCCCTGTGTTTGAGAGTGGGTGTC
AAGGGTAACTTCATCTCAATTTTTCCCCTGTAAGTTCCGATTCTCCATTC
TGGGTGGGGCATACCTGCCAATTTGCAAACCAGTTCCCCTAGGGTAATAA
TTTTTGCTTGAATAATTTGGATTacagaaatttaatttattacTTTCTTG
ATGATCGAATGTAAATAGAAATTCAATTCTCTTGGAATCTttttatgaaa
tcaaactaTTGATGATTTAATTCTTAATTGAACCAGATTGAACCATTAAA
CCAAGAAGccaatataaataaaaatttgccgCCTTTTTTGCTACGGTACT
CCATTTTTTCCGTCCCACTCGAAAACATACGGGCTCGCTTGTTCTCGGAA
TGTCAAGGGGCCTGGAAATCAG
Run BLAST on NCBI

transcript from alignment at sc0000313:163401..167410+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018918 ID=TCONS_00018918|Name=TCONS_00018918|organism=Clytia hemisphaerica|type=transcript|length=4010bp|location=Sequence derived from alignment at sc0000313:163401..167410+ (Clytia hemisphaerica)
GTCAGTAGCAGTTCGCGTGGTTGGACTCTTCAACTCTTTTCTGCTGGAAC
TCCTCCACTTCTTCgccaaaaattttagattacaAACGATCCATGGGCTC
TAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCAAATCCAAA
AATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGAATTTATCA
TCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAATGGAAAAT
GCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTCAACTTCAA
ATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAATCAAAACA
CTACAACAATCAGAACGAGGATCTTATTTGGCAgctttttttcgactttt
tggtAAAGATGCTcccttgaaattttgcattCAAGTCATTCAAGTGTGGT
GGAGGGGGTTGTTAAACAGTCACAAAGTCACAAAGTCTAACTTTTCAAAT
ATGTTGCTCTAAAAAGGGTcacttttatcgcaaaaattcggTTTATTTAC
AGTATTCAAGAGCCAAGTTTATGGTCCAGGCCACACCCCAAACACAAAAT
TCCCCAAGCCTATATAGTTTTCTAACTTTTCTGGCAGTCTGGAGATCAAA
TGATTTAGGTGTTTTTCTTCTCACAATTTTTACAAGCAGTTCTTCTTTCA
ATGTTTTAGATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATGT
TTTACCCTTTGCGATAAGGTACTAGTATGTAGTATGTTGCAATTATTGTT
GTGTCgttttatataatataaaatcGGAGATGTGAAATTTTTAAACATAA
ATACTAATTGGATAATCCCCTCAAGGGTCTACAGTCaaggaaatccctca
attgcggtagttgAATTTTCATTGGGAAATCATTTTACCAAAATTGAGAG
GCAATCTTGAAAGGAATACCGTACAAAACCTGAAATTCAGAACATGAACA
caaaattgaaacatgaatACTCTAAGGTCGTAAACTAAAGTAAAGTTGTT
CCCTAAAACCCTGAAATATACTTGTTTAAGGCAATCTAAAGGggcaaaaa
tcaagaaaaattgtCCCAATGGTGCCCCACACTCTCAATGTAAAGCTGCA
GCGTAGGAATCACGTTGCAGAGTTCTTCATCGTCTTTGACTCCCGTGTAG
GAATCAGCTTGATTCCCTGTATTACAATGATTCACTTTATAAAGGAGCCT
TTGCTCAAAGTAAACGACTCAGGTAGCTCAAATGAGGGGAATGGTGTACG
TGTACcaccatACTTCTGTTCTAAAACATTATCAAGGCCTTAAAATTCGA
TGGACCACTTTAGACAATTTAGAATTAATCACAATCTTATTTTATAGTAT
CTGCTGGCGATGATTTACGTTTATTTTCGCAGAGCCAAACTAACAAGAAA
GGATTTTACacgtcaaaatttctttcttgcACTGTAAGTCTTTCTTGGCA
CTTTGGTTTTATCGTTGATATGATCGCAGAAATagactgaaatttcatta
attgaCCAGGATTTTAGCTTCATGGCAAACGGGATGCTACATTTAAATTG
ACTGACTGTTGTAAAGTTTACTGTTTAAGAATCCACTGGGggctttcaaa
aaatttatccatAGTAGAAATttcgtgaatttcgaaaaaaattgcgtggt
tgcgtgaattgagggtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgggggggggggggtggctCATCCACTGTATATAAGGTACACATATG
ATGGACATTCTCGAACCCAGAGCCGCCACTGATTTTTCTGATATATGTTA
GTACactatcaaaatcataaaaagcgaACCAAGTGACTGACGTGAGTTCG
AGTTTTGGACTTTCATACTACAGGAGGAAGAAATCTTAGTTGGTGGGGGA
AAACTTGGTcacttttatgaaaatatttgtcaCTTCTCTCTTGAAGTTGA
TGACTAATTTGTCACTTCTCTCCCGaccaatttttcctctttaagGTATC
ACAAAACTGCATATTTCAGGTATATTGCTCATGAAATAGAAGAGGACGAT
GAAGAATTAAAAATGGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTG
GAGAAGCAAACTTAAAGAGTTTCTATATAAGAGGAACGTGTTTTTACAAC
GAATGAAGTTTCGTGCTGTCGTCAGTAGAACAACCTGTGATGAGGTtcgt
ttttatgattttgagctTCAAAATTACTTTAAACGCTTTCTTAGTAACAT
CagatataaaatttttcttactaAGCGGTGTCAGTATGAATAAAttaccg
atttttttctggtcTTATGTCTGTGATCTATTTCCTTTTAACATCCCATG
TTTTTAAGTATCTTTACCAGGTCTTTGTTATTCATGTTTAAAACTATATA
CGATAGTTATCAGAGTGAAGCAGAATGAACTTTACAGAAAGTCTTCCATG
GTCGTTTTATTTGGTTCCCAATAAGGATTGTTTGATAGCTTTGTTATCTA
CATTGTCCTTGTAACTTCAcatatttttcagatattcGATTTATTTCCAA
AACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATT
CGATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAA
TCAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCT
CGCATAACACATTTATAAAAGGTATTTAACGTGATAAATTCTCTCAGAAA
TGATGATTACATCACGTCATTACATCAACGCCATTAGATGAGACCAGCCT
TGCGTTGACGTTAAACAAAAGAGCGTTACCAGACTGTTGTCCATCCTCTA
GCGTATCTAGACAAAAAAATTGCATCTTAAGACTGTTTTACGCTTTCTTA
TGAATCTATTttcttcattaatttttttgatcaaTTTGATTAGATTGATC
AATTAATTTTCAGCATATCCAGCAAATAAGAACGACATTTACTTCAAGAA
CTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAATATGCGA
TCGAACGTTAACGAACAGCACCTTATTTCAtatattcatattggaagttc
tAAGAGCATCCACATCATCTACGTTCCAAGATATTTATTCGAACTCTTCT
AAAACGCTCATGACAAGCAGTAAATTTAAGCTGACGCCAGCCAAATGCGT
CAAGAACCTGTCAGTTGGTTAAGTGACTTGTCGAAGACATGAGTGACACT
ACGATATTTATTTTTCGAGCACATAGTCGCGAATACTTTACCTTCCTTCT
GAGTTTAGGGAATCTTGGAATAGATGACCGGGGTATACCTGAGAAGAATA
AGTACCAGGTATGTGAGCGCATGTAAAGAGGCAAGTGCCGTAAAACCAGA
GAAATCGTtgatatcccccgtcaacgcatCTATCAGTTTATTAATAGCGT
AAGGGGTCAGATAAGCCCTGTGTTTGAGAGTGGGTGTCAAGGGTAACTTC
ATCTCAATTTTTCCCCTGTAAGTTCCGATTCTCCATTCTGGGTGGGGCAT
ACCTGCCAATTTGCAAACCAGTTCCCCTAGGGTAATAATTTTTGCTTGAA
TAATTTGGATTacagaaatttaatttattacTTTCTTGATGATCGAATGT
AAATAGAAATTCAATTCTCTTGGAATCTttttatgaaatcaaactaTTGA
TGATTTAATTCTTAATTGAACCAGATTGAACCATTAAACCAAGAAGccaa
tataaataaaaatttgccgCCTTTTTTGCTACGGTACTCCATTTTTTCCG
TCCCACTCGAAAACATACGGGCTCGCTTGTTCTCGGAATGTCAAGGGGCC
TGGAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010604XLOC_010604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018918-exon-sc0000313-1491911889:163401..163715TCONS_00018918-exon-sc0000313-1491911889:163401..163715Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1510915933:163401..163715TCONS_00018918-exon-sc0000313-1510915933:163401..163715Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1575043694:163401..163715TCONS_00018918-exon-sc0000313-1575043694:163401..163715Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1491911889:164110..164168TCONS_00018918-exon-sc0000313-1491911889:164110..164168Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1510915933:164110..164168TCONS_00018918-exon-sc0000313-1510915933:164110..164168Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1575043694:164110..164168TCONS_00018918-exon-sc0000313-1575043694:164110..164168Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1491911889:164798..164883TCONS_00018918-exon-sc0000313-1491911889:164798..164883Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1510915933:164798..164883TCONS_00018918-exon-sc0000313-1510915933:164798..164883Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1575043694:164798..164883TCONS_00018918-exon-sc0000313-1575043694:164798..164883Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1491911889:165570..165744TCONS_00018918-exon-sc0000313-1491911889:165570..165744Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1510915933:165570..165744TCONS_00018918-exon-sc0000313-1510915933:165570..165744Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1575043694:165570..165744TCONS_00018918-exon-sc0000313-1575043694:165570..165744Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1491911889:166082..166271TCONS_00018918-exon-sc0000313-1491911889:166082..166271Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1510915933:166082..166271TCONS_00018918-exon-sc0000313-1510915933:166082..166271Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1575043694:166082..166271TCONS_00018918-exon-sc0000313-1575043694:166082..166271Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1491911889:166514..167410TCONS_00018918-exon-sc0000313-1491911889:166514..167410Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1510915933:166514..167410TCONS_00018918-exon-sc0000313-1510915933:166514..167410Clytia hemisphaericaexon
TCONS_00018918-exon-sc0000313-1575043694:166514..167410TCONS_00018918-exon-sc0000313-1575043694:166514..167410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:163401..167410 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.931188	0.221565	0	0	0.112893	0.0395194	0	0	0	0.0311899	0	0.0133149	0.0142889	0	0.0134904	0.0997056	0	0	0.123513	0.562692	0	0.932191	0.887222	0	0	0	0
Blast
[Close]
BLAST of TCONS_00018918 vs. Swiss-Prot (Human)
Match: SPDYA (Speedy protein A OS=Homo sapiens GN=SPDYA PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.663e-40
Identity = 77/163 (47.24%), Postives = 105/163 (64.42%), Query Frame = 3 
Query:  318 DDFIQDFLWLDRCFTLCDKYLLAMIYVYFRRAKLTRKDFTRQNFFLALYIAHXXXXXXXXLKMEIYPWALGSELWRSKLKEFLYKRNVFLQRMKFRAVVSRTTCDEIFDLFPKHPAWQRERNGNHGGAIRFYNQNLENEVFSPSRNQMRCKVCLNGKSPIRIS 806
            DD IQDFLW+D C  + DKYLLAM +VYF+RAK T  + TR NFF+ALY+A+ +EED+EE K EI+PWALG   WR     FL  R+    R+ +RA+VSR  C+E+  + P H  WQRER+ +H GA+R YN++       PS   + C +C   +  +R+ 
Sbjct:   80 DDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANTVEEDEEETKYEIFPWALGKN-WRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRLG 241
The following BLAST results are available for this feature:
BLAST of TCONS_00018918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPDYA4.663e-4047.24Speedy protein A OS=Homo sapiens GN=SPDYA PE=1 SV=... [more]
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