TCONS_00018952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018952
Unique NameTCONS_00018952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018952 ID=TCONS_00018952|Name=TCONS_00018952|organism=Clytia hemisphaerica|type=transcript|length=337bp
TATAGAGAGGAGGAGATTCTGGACCACCTTGTCTGACTCCAGTCGTTGGG
TTGAATATATCTTCCGGTGTTTCCGATAGAGCAGTGGTTGTGTGCGAATA
GACAGcctccaaaatttgaaagagTGTATTATCGGCATTAGGAGGAAACC
TTTGTTGGATGGATTTGAATAGCCAACTTCTCACGACATGATCAAAAGCT
GAGCTGAGGTCGACGAACAAAACAACTACTAGGCTTTTTCATCATATCGG
TTATTTGCTGTATTCTTTTCGTCACGAAAATACCGTCAGAGGTTCCTCTT
CCCGAACGAAAGCCTTGTTGTTGGTCGGGTAGGGTCT
Run BLAST on NCBI

transcript from alignment at sc0000313:112340..112676

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018952 ID=TCONS_00018952|Name=TCONS_00018952|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000313:112340..112676 (Clytia hemisphaerica)
AGACCCTACCCGACCAACAACAAGGCTTTCGTTCGGGAAGAGGAACCTCT
GACGGTATTTTCGTGACGAAAAGAATACAGCAAATAACCGATATGATGAA
AAAGCCTAGTAGTTGTTTTGTTCGTCGACCTCAGCTCAGCTTTTGATCAT
GTCGTGAGAAGTTGGCTATTCAAATCCATCCAACAAAGGTTTCCTCCTAA
TGCCGATAATACActctttcaaattttggaggCTGTCTATTCGCACACAA
CCACTGCTCTATCGGAAACACCGGAAGATATATTCAACCCAACGACTGGA
GTCAGACAAGGTGGTCCAGAATCTCCTCCTCTCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010622XLOC_010622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018952-exon-sc0000313-1491911889:112340..112676TCONS_00018952-exon-sc0000313-1491911889:112340..112676Clytia hemisphaericaexon
TCONS_00018952-exon-sc0000313-1510915933:112340..112676TCONS_00018952-exon-sc0000313-1510915933:112340..112676Clytia hemisphaericaexon
TCONS_00018952-exon-sc0000313-1575043694:112340..112676TCONS_00018952-exon-sc0000313-1575043694:112340..112676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:112340..112676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.554334	0.540563	1.25529	0.614052	1.86887	2.3629	1.78171	4.00323	0.700689	0.867917	0	0.43608	1.10601	0.765734	1.25908	2.09624	0.208068	2.34589	0	0.924941	2.26647	3.52921	0.317794	0.577842	0.892745	0.265585	1.14015	0.811201	0.615267	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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