TCONS_00019008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019008
Unique NameTCONS_00019008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019008 ID=TCONS_00019008|Name=TCONS_00019008|organism=Clytia hemisphaerica|type=transcript|length=991bp
TCCTTCTTCAGATACGTTTGTAGTCTCTTGGGAATTATTTTTGCCAGAAT
CTGTATTAGGTTTAGGTATAGTAAATAAAACCTTTAGCTTTTCAGTAgtt
gttttaaaaatattttcctcaGACTGTTGTTGCACGTCcgtatcattttc
atttgtaGTGTGATCTGCTGGCACATGTGATTGTTCCGTTTCTCTCGTAT
TGTCAGGTTGTTTTTTAAAACGAAACATGTTagttaaattatttttaccG
TCATCAAAAATCTTTGCAATATCGATAGAATTCTTTGACGGAGTATCACA
TTCGTTTGCTTTCAAGGATTTCTCTCTTAATAATCTGTTctcatattttt
caatttcaatagcCATATCGAAGCAAGTTAGCTCCATGGTTATTTGATAT
GCTGTtttatttttgcttgtttttaagaATGGGTCGATCCCCTCTTGTAT
TAGAACTTCTACGGCATCGTGCTTTCTAGCAAAAGCTGCTTTATGTAGAG
CACTccaattttgtttattttgcgtgttaatattgaaatcagcgttaaat
aaaaacttaataattcgaatgtttccATTCTTAGATGCCTCGTGTAATGC
GTTATCTCCTAAAATACATGCGATGGAGGGATCTGCATCATGGTCTCGCA
GCACTAGCACTCCATCATAGTGTCCTTGAGCGCAAGAGATATGCAATGCC
GTTCGACCGATCGAAttctgtttgtttacattggcGCCATTTTGAATTAG
GATTTCCATGACGTCACTGTACTCCATTTGAGCAGCAAGGTGAAGAGGAG
CATTGCCGTTTTTGGTTTTGTGGATTGCATCAGGTTTCTTGCTAAGAAAA
GTTCGTAGATTTTTCAGGTTTCGTGATTCGATGATTTTGAATATGTCAGT
TTTTAACATGGTGTAATCTTTTACCACGCGGTTAGAATATGACGTAATCT
AGAATTGATTTTATTTGTTCTTCTTGCAAGCTGAaaagaga
Run BLAST on NCBI

protein sequence of TCONS_00019008-protein

>TCONS_00019008-protein ID=TCONS_00019008-protein|Name=TCONS_00019008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MLKTDIFKIIESRNLKNLRTFLSKKPDAIHKTKNGNAPLHLAAQMEYSDV
MEILIQNGANVNKQNSIGRTALHISCAQGHYDGVLVLRDHDADPSIACIL
GDNALHEASKNGNIRIIKFLFNADFNINTQNKQNWSALHKAAFARKHDAV
EVLIQEGIDPFLKTSKNKTAYQITMELTCFDMAIEIEKYENRLLREKSLK
ANECDTPSKNSIDIAKIFDDGKNNLTNMFRFKKQPDNTRETEQSHVPADH
TTNENDTDVQQQSEENIFKTTTEKLKVLFTIPKPNTDSGKNNSQETTNVS
EEG
Run BLAST on NCBI

transcript from alignment at sc0000314:63165..64155

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019008 ID=TCONS_00019008|Name=TCONS_00019008|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at sc0000314:63165..64155 (Clytia hemisphaerica)
tctctttTCAGCTTGCAAGAAGAACAAATAAAATCAATTCTAGATTACGT
CATATTCTAACCGCGTGGTAAAAGATTACACCATGTTAAAAACTGACATA
TTCAAAATCATCGAATCACGAAACCTGAAAAATCTACGAACTTTTCTTAG
CAAGAAACCTGATGCAATCCACAAAACCAAAAACGGCAATGCTCCTCTTC
ACCTTGCTGCTCAAATGGAGTACAGTGACGTCATGGAAATCCTAATTCAA
AATGGCgccaatgtaaacaaacagaaTTCGATCGGTCGAACGGCATTGCA
TATCTCTTGCGCTCAAGGACACTATGATGGAGTGCTAGTGCTGCGAGACC
ATGATGCAGATCCCTCCATCGCATGTATTTTAGGAGATAACGCATTACAC
GAGGCATCTAAGAATggaaacattcgaattattaagtttttatttaacgc
tgatttcaatattaacacgcaaaataaacaaaattggAGTGCTCTACATA
AAGCAGCTTTTGCTAGAAAGCACGATGCCGTAGAAGTTCTAATACAAGAG
GGGATCGACCCATtcttaaaaacaagcaaaaataaaACAGCATATCAAAT
AACCATGGAGCTAACTTGCTTCGATATGgctattgaaattgaaaaatatg
agAACAGATTATTAAGAGAGAAATCCTTGAAAGCAAACGAATGTGATACT
CCGTCAAAGAATTCTATCGATATTGCAAAGATTTTTGATGACggtaaaaa
taatttaactAACATGTTTCGTTTTAAAAAACAACCTGACAATACGAGAG
AAACGGAACAATCACATGTGCCAGCAGATCACACtacaaatgaaaatgat
acgGACGTGCAACAACAGTCtgaggaaaatatttttaaaacaacTACTGA
AAAGCTAAAGGTTTTATTTACTATACCTAAACCTAATACAGATTCTGGCA
AAAATAATTCCCAAGAGACTACAAACGTATCTGAAGAAGGA

Coding sequence (CDS) from alignment at sc0000314:63165..64155

>TCONS_00019008 ID=TCONS_00019008|Name=TCONS_00019008|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000314:63165..64155 (Clytia hemisphaerica)
ATGTTAAAAACTGACATATTCAAAATCATCGAATCACGAAACCTGAAAAA
TCTACGAACTTTTCTTAGCAAGAAACCTGATGCAATCCACAAAACCAAAA
ACGGCAATGCTCCTCTTCACCTTGCTGCTCAAATGGAGTACAGTGACGTC
ATGGAAATCCTAATTCAAAATGGCgccaatgtaaacaaacagaaTTCGAT
CGGTCGAACGGCATTGCATATCTCTTGCGCTCAAGGACACTATGATGGAG
TGCTAGTGCTGCGAGACCATGATGCAGATCCCTCCATCGCATGTATTTTA
GGAGATAACGCATTACACGAGGCATCTAAGAATggaaacattcgaattat
taagtttttatttaacgctgatttcaatattaacacgcaaaataaacaaa
attggAGTGCTCTACATAAAGCAGCTTTTGCTAGAAAGCACGATGCCGTA
GAAGTTCTAATACAAGAGGGGATCGACCCATtcttaaaaacaagcaaaaa
taaaACAGCATATCAAATAACCATGGAGCTAACTTGCTTCGATATGgcta
ttgaaattgaaaaatatgagAACAGATTATTAAGAGAGAAATCCTTGAAA
GCAAACGAATGTGATACTCCGTCAAAGAATTCTATCGATATTGCAAAGAT
TTTTGATGACggtaaaaataatttaactAACATGTTTCGTTTTAAAAAAC
AACCTGACAATACGAGAGAAACGGAACAATCACATGTGCCAGCAGATCAC
ACtacaaatgaaaatgatacgGACGTGCAACAACAGTCtgaggaaaatat
ttttaaaacaacTACTGAAAAGCTAAAGGTTTTATTTACTATACCTAAAC
CTAATACAGATTCTGGCAAAAATAATTCCCAAGAGACTACAAACGTATCT
GAAGAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010652XLOC_010652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019008-exon-sc0000314-1491911889:63165..64155TCONS_00019008-exon-sc0000314-1491911889:63165..64155Clytia hemisphaericaexon
TCONS_00019008-exon-sc0000314-1510915933:63165..64155TCONS_00019008-exon-sc0000314-1510915933:63165..64155Clytia hemisphaericaexon
TCONS_00019008-exon-sc0000314-1575043694:63165..64155TCONS_00019008-exon-sc0000314-1575043694:63165..64155Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019008-proteinTCONS_00019008-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:63165..64155 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0884818	0	0	0	0.0483462	0.116655	0.163817	0.152923	0.0473549	0.321747	0.0302148	1.3276	1.22206	0.772843	0.580565	0.204345	0.139632	1.10922	1.46352	0.701829	0.449305	0.312108	0.283752	1.16903	1.47805	0.0622085	0.0663906	0	0.102607
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00019008 vs. Swiss-Prot (Human)
Match: ANK3 (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.784e-19
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = -2 
Query:  388 KNLRTFLSKKPDAIHKTKNGNAPLHLAAQMEYSDVMEILIQNGANVNKQNSIGRTALHISCAQGHYDGVLVLRDHDADPSIACILGDNALHEASKNGNIRIIKFLFNADFNINTQNKQNWSALHKAAFARKHDAVEVLIQEGIDPFLKTSKNKTAYQIT 864
            K  +  L KK +   K  NG  PLH+A +     VME+L+++GA++      G T +H++   GH + V  L  H A P+   + G+ ALH A+++G   ++++L      +  + K + + LH +A   K D V+ L+Q+G  P   T+   T   ++
Sbjct:  381 KVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLS 539

HSP 2 Score: 82.8037 bits (203), Expect = 2.942e-17
Identity = 46/159 (28.93%), Postives = 73/159 (45.91%), Query Frame = -2 
Query:  343 KTKNGNAPLHLAAQMEYSDVMEILIQNGANVNKQNSIGRTALHISCAQGHYDGVLVLRDHDADPSIACILGDNALHEASKNGNIRIIKFLFNADFNINTQNKQNWSALHKAAFARKHDAVEVLIQEGIDPFLKTSKNKTAYQITMELTCFDMAIEIEKY 819
            K K+   PLH++A++  +D+++ L+Q GA+ N   + G T LH+S  +GH D    L DH A  SI    G   LH A+K G + +   L     + +   K   + LH AA         +L+ +G  P        T   I  +    D+A  + +Y
Sbjct:  495 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEY 653
The following BLAST results are available for this feature:
BLAST of TCONS_00019008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK31.784e-1929.56Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3[more]
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