TCONS_00019013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019013
Unique NameTCONS_00019013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019013 ID=TCONS_00019013|Name=TCONS_00019013|organism=Clytia hemisphaerica|type=transcript|length=794bp
ATCGTTCGTTAGTCTGGTGCTATCTTTTCTCAAGgctttatcattagttt
ttttcagaCATTTTGCACAATATGGCGAAGCCTTTCTTtgtgataaaaaa
tatttttttccggtcgaaaacgCCAGTGTCTAGTTCAGTTCATATTTTTA
TactaataatattttttttcatattgtattttttgatcgATTCACCACTA
AATCTGTAAGAATACTTACTGCCTTCAGTATTTAGttagttttattttta
gataattttgactttaagtatGATAAAGTTTACCAAATCAAAGGTTTCTC
TTTAAGtcttataaatatttatattatataaCAAAGGAAGATTATATTAT
ATGAGTCTTTGATTAAAGTCATTTTGGTATATACTTTAAATACGCCCTGT
ATATAACAAAGTTCAAGTATCCATAATTAGtatttcaacattttactatt
tgaTAATCTTTCACCTTAGGACCAATCGTATATATAAattgttttagatt
ttcaacatcttttttgttttttttttcttgccgCCAATTTTTCTTGGTTA
Ttcacactgacctttatatatccctgggccaagctatatccgccatcttt
gatcgaagttttttttcaaagggtACCCacaaagaagacattgcagtatT
AAACATaaaacgtctaacggcgctacatcatcaaaagtattcgggGAAAA
GTGGACCTAGCGCTCTAAATGCATTTACACTGATATCGAGTAGTGTCGCT
TTTAGGGAACCACTTTACAAAAAACTCCGATCCAAGATTTAGTC
Run BLAST on NCBI

transcript from alignment at sc0000314:102336..103129

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019013 ID=TCONS_00019013|Name=TCONS_00019013|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at sc0000314:102336..103129 (Clytia hemisphaerica)
GACTAAATCTTGGATCGGAGTTTTTTGTAAAGTGGTTCCCTAAAAGCGAC
ACTACTCGATATCAGTGTAAATGCATTTAGAGCGCTAGGTCCACTTTTCc
ccgaatacttttgatgatgtagcgccgttagacgttttATGTTTAatact
gcaatgtcttctttgtGGGTaccctttgaaaaaaaacttcgatcaaagat
ggcggatatagcttggcccagggatatataaaggtcagtgtgaATAACCA
AGAAAAATTGGcggcaagaaaaaaaaaacaaaaaagatgttgaaaatcta
aaacaatTTATATATACGATTGGTCCTAAGGTGAAAGATTAtcaaatagt
aaaatgttgaaataCTAATTATGGATACTTGAACTTTGTTATATACAGGG
CGTATTTAAAGTATATACCAAAATGACTTTAATCAAAGACTCATATAATA
TAATCTTCCTTTGttatataatataaatatttataagaCTTAAAGAGAAA
CCTTTGATTTGGTAAACTTTATCatacttaaagtcaaaattatctaaaaa
taaaactaaCTAAATACTGAAGGCAGTAAGTATTCTTACAGATTTAGTGG
TGAATcgatcaaaaaatacaatatgaaaaaaaatattattagtATAAAAA
TATGAACTGAACTAGACACTGGcgttttcgaccggaaaaaaatatttttt
atcacaAAGAAAGGCTTCGCCATATTGTGCAAAATGtctgaaaaaaacta
atgataaagcCTTGAGAAAAGATAGCACCAGACTAACGAACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010657XLOC_010657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019013-exon-sc0000314-1491911889:102336..103129TCONS_00019013-exon-sc0000314-1491911889:102336..103129Clytia hemisphaericaexon
TCONS_00019013-exon-sc0000314-1510915933:102336..103129TCONS_00019013-exon-sc0000314-1510915933:102336..103129Clytia hemisphaericaexon
TCONS_00019013-exon-sc0000314-1575043694:102336..103129TCONS_00019013-exon-sc0000314-1575043694:102336..103129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:102336..103129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.607938	1.12506	7.47257	9.6785	0.329312	0.518062	0.93915	0.589879	1.08209	1.53383	0.741772	1.01453	1.25311	1.43198	1.24719	1.22829	2.3329	2.24343	0.322745	1.0163	1.94809	2.06997	1.96358	1.20705	1.76437	0.640581	0.856036	0.0912186	2.39282	1.94979
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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