TCONS_00019053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019053
Unique NameTCONS_00019053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019053 ID=TCONS_00019053|Name=TCONS_00019053|organism=Clytia hemisphaerica|type=transcript|length=1613bp
CAATGTTGTTCATTTCCGTAGCTTTTGCTTATGAAACAGGAGATGCTCAC
AGTGACTGTATCAAAGGCGTTGTAGCGCCTTCATGTAAACCCTACTATTA
CGTCACAAAGAGTTATCGAAGATATGATGGTTTATGTAATAATCTGAGGT
TTCCACATGTTGGTGCAGGTCGTACACCACTTCGGCGATTAATATGGGCA
AATTACGTTGATCAACGTCAGGTGGACACGCCCAGAGGATTCCCTGGTAC
CAAACCACGTGTACCGCCCGCCAACAAAGTCTCACTTGCTGTATTTCACG
CCAAACAAAATGACGATGGAAATAGATGGAAATTATCCACTTTGTTCATG
ACCATGGGACAATTCCTCGATCACGATTTTGCATTAGTCGGGCATTCGAA
ATGCAAAGCTCAAAGCTGTAACTCGAAAGATGCATACAAGTACCCTTGCT
TTCCGATCAAGTTTACAGACTATGGCTCCAAATGTACTCCTTTCACTCGT
TCACAACCTATTTGTCAAAAAGCACCAGCGGGTAGACGCACAGACAGACA
GATAGCCAACTTGATTACATCTTTTGTTGATCTATCACAAGTTTATGGAG
CTTCTATTGAACATGCCaagaaattgaggaaaaacgaTGGTTCCGGTGAA
ATGGCCATGCGGTCTGGTAATCTTCTTCCATTATCAAACGAACCATGTGA
CACAATTGGAGGCTGTTCAATGGCCGGTGATCCGAGAGCTGATGAAAACA
TTGCATTATATTCTATGCATACAGTATGGATTCGAGAACACAATCGTGTT
GTTAAGAAGCTGAGAAAAAATCATAAGACATGGTCCGGTGAAAAACTTTA
TCAGGAAGCACGAAAGATTGTGATTGCTGAATATCAACATATCATTTTCA
ACGACTGGGTCCCACGTATCGTTGATATAGGACCTTACACTGGGTACAGC
TCACGTTATGACGCAACCCTTATTAATGCTTTCTCAACTGCTGCTTTCCG
GTTCGGACACAGTTTAGTACCAAACGAATGGCAACAATGCAACTCAAATT
ATGATAAAATCGCAAAAGATATAAGTTTACAAAGTTCATTTTTCAATATT
GGCAGTATCAATCAAAGAGGAATAGAACCAACTGTGTATGGTCTCATGGc
aaaccaatcaaatcaaatggaTACTAACTTTGCTTTTGATCTTGTTCGCC
GTTTGTTTGTACCACCAGGCCATCATGAACATCACGATTTGACAGCTTTG
AATATCCAACGAGGGCGTGATCACGGGTTACCGACTTATGGTGCGTGGCG
TAAATATTGCCGCCTACCGCCCATCTCTAGCTACAAGGATCTGGAACAAT
ACATGTCAATAGAGAGTGTGAAAAGCTTCCAAAAGTTATACAGTCATCCG
AATGATATTGATCTTTTTGCCGCTGGTATTGCTGAGCACAATGTACCAAG
ATTCCAAACTGGACCGATATTCAGATGTTTGTTCTGGCACCAATTCAAAC
GATTAAGGGAAGGAGATCGATACTATTATCTCAATCCTGGTGTCTTCACG
CATGCTCAACGACGTGAATTGACCAAAACATCCATGGCGAAAATCTTGTG
TAATAATTTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00019053-protein

>TCONS_00019053-protein ID=TCONS_00019053-protein|Name=TCONS_00019053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp
MLFISVAFAYETGDAHSDCIKGVVAPSCKPYYYVTKSYRRYDGLCNNLRF
PHVGAGRTPLRRLIWANYVDQRQVDTPRGFPGTKPRVPPANKVSLAVFHA
KQNDDGNRWKLSTLFMTMGQFLDHDFALVGHSKCKAQSCNSKDAYKYPCF
PIKFTDYGSKCTPFTRSQPICQKAPAGRRTDRQIANLITSFVDLSQVYGA
SIEHAKKLRKNDGSGEMAMRSGNLLPLSNEPCDTIGGCSMAGDPRADENI
ALYSMHTVWIREHNRVVKKLRKNHKTWSGEKLYQEARKIVIAEYQHIIFN
DWVPRIVDIGPYTGYSSRYDATLINAFSTAAFRFGHSLVPNEWQQCNSNY
DKIAKDISLQSSFFNIGSINQRGIEPTVYGLMANQSNQMDTNFAFDLVRR
LFVPPGHHEHHDLTALNIQRGRDHGLPTYGAWRKYCRLPPISSYKDLEQY
MSIESVKSFQKLYSHPNDIDLFAAGIAEHNVPRFQTGPIFRCLFWHQFKR
LREGDRYYYLNPGVFTHAQRRELTKTSMAKILCNNLN
Run BLAST on NCBI

transcript from alignment at sc0000317:272984..279269-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019053 ID=TCONS_00019053|Name=TCONS_00019053|organism=Clytia hemisphaerica|type=transcript|length=6286bp|location=Sequence derived from alignment at sc0000317:272984..279269- (Clytia hemisphaerica)
CAATGTTGTTCATTTCCGTAGCTTTTGCTTATGAAACAGGTGAGATGGTT
TGCCATATTTTTTTCGTAATTTGGGACTGCTGCATTAAAGCCACAATCTT
TTCGTGCACCTTGCTCGATTGGTATTAAGGTGCTTTTAAAATTGACCGGA
TGCCAACCAAAAGGTTTTTAATTTTCAATTTTGTGAGAAAAATCTTGTAG
CCGGTGGAAATCAGGTTTTCCCTAGACACCAGATCATGATTCAGAAACTG
GTAGGTTGTTTTTTTTTTACTGACAAACTTTGCCTCCGTTGGACTTTTAA
CATTTTAAACTGTACTTCCTTATCTCAGTCAGTTCCTGATAAGGGCTGTA
TTTCTTCAACTGTATTTAGCATCGTGTATAACTTCTTCATTAGCTTAAAA
ATCTTTCCCGACACTTTTCCCTGTTAGATTTTTCCCCTTATCAGGTATTG
TAAATTAACTTTTCAGGAGATGCTCACAGTGACTGTATCAAAGGCGTTGT
AGCGCCTTCATGTAAACCCTACTATTACGTCACAAAGAGTTATCGAAGAT
ATGATGGTTTATGTAATAATCTGAGGTTTCCACATGTTGGTGCAGGTCGT
ACACCACTTCGGCGATTAATATGTAAGTACCGGCGAGCTGTTCGAATTGA
TTGATCAATCGATTGTTTCATTGAGTTGAAGTTTTGAAAGTGTAAACAAA
ACTCATTGAGTGATCAAAGTCTCCCTTCACACCACTGCCATAAACACTCC
CTGCTCACAGACCCACTGGAAACCCTTCCCACTGGAAAAATTCTCCAAAA
TATCATCCCCGGTGGAAAATTATCCTCCAATTTTTGTCCCAACTGAAAAT
AATCATATAAACCAATCCTCACTGCAAAGTATTTACTATTTTTCCAATCT
CCACTGAATTTTCTGACTTTAAAACAAAAGAATTGAAATCCCCATTCATA
AAGAATATGTGAATATCAATCCCCATCGATTTTCAGTCCGTTAATTCTAT
CCCCACTGGTTGAAAAAAATCCTATCGGGTCTGTGAGAAGCCGGGGTGTT
CATAATCAACCTTTTGTAACTCTGTGATAGGTTTGTTTGGGTAAAGTTTC
AAGTGTATATACATATACGCGCAAAAATATTCTCCTGGTCTTGTTACTTC
AAATACAGTGCAATCTCCATAACTCGAACACGCACCCGGGGAACACGAAT
TTGTTCGATTTAATGAAATTTTTAGATATTGAGTATTGTTTGTAATTGTT
AATTGAAGAGACTAGGAAAACTTTTCGAGTTAAGAAGACATTTGAGTTAC
AAAGATTCAAATAATGGAGAGAATTTCTTTTTTTCCACAGGGGCAAATTA
CGTTGATCAACGTCAGGTGGACACGCCCAGAGGATTCCCTGGTACCAAAC
CACGTGTACCGCCCGCCAACAAAGTCTCACTTGCTGTATTTCACGCCAAA
CAAAATGACGATGGAAATAGATGGAAATTATCCACTTTGTTCATGACCAT
GGGACAATTCCTCGATCACGATTTTGCATTAGTCGGGCATTCGAAATGCA
AAGCTCAAAGGTATTATGAACGCCCTTATTCAAAAGTGATTTAAGCCTTA
AATTCAACAATATAAACTCCATTAAAAGGGGATGATTTTCATTTTCATAA
CATGGCTAATGTTTTGCCATCTGTGGTACCATATTCATGCTCTTGTCCAT
GTATTTCATAGACCGGCTTAGAATCGACATATTTACCTTTAAAATGCCTC
AAGTCATAGGATCAAAAAATCCTTTTGACTTCAAATTTGGACCACAACAT
ATGGAGGAAATTTCATACATAGTTTTAGGTGGTAACTCCTACCTTGTTCA
TTTGTAGCATTTGTTCATCTTGAAATATGAGGAGGGGGAGGTAGCACTCA
CATATAAAAACATACAGAGTACTATCGAGGGGTAACCTTAGCGCCTTTTT
TGACTTGGGAATTCTTGGAGAACAATATTAGAACCCAATAATATCAGCTG
CTTGTGAGAGAGATAAAACTGCTATGGAACTTCTCATGAATAATCAGTGA
ATCACCATAAAAAGAAAAAAAAACAATGAATCACCATGTCCCCTTTTCCC
TAAAATGACCAAGGACTTCCTTGTGGTTTCAACCAATTTGCTGCCTCGAC
CACCAAAAAATTTGGGTGATGTCGAGAATTGTGTTTTTTCATGGTTAGAT
TATGGTTACCCTTAATCGGCTTTTTTGTAAATTATATCACGCCAGACTAG
GAAGTTTTGTATCATTATTTTATTACATATTGTCTGTCGCCAAACTTGTA
TCCAGTCTCTTTACTCCTAGCCTATACCAGACGTCGCCCTTGTACGCAAT
TAACGTCTGTTCCACTTTGCGACTTTTTCGAATGTTTGGAGCCCAGGTTT
TCGGGCTCCGATTTTGTTCTTGGCAATCGCGATTTTGCCGTAGCTTTTAA
CAGTCGTGGTGGCGGGAGCTTGGCACACACTCAGTCGCAGCTCAAGTCTA
TATGAATATATGCACCATGTCCCTACTGGAATTATGTAACTATGCGAGCT
GTTGGCGATGGAGAATTTTTTCACATAGTTTGTTTACCTTTTTCCCTTAA
CAGAGATAATTATTCTAACTCTTTGAAAATCCTGGTTTTTAGTGAGGTGC
TCGCTACTTTACTCCCTTATTTTACGATTTTAATTATGAGCGCATGTCCT
ACCAAGTTCCTTGGTCAAACTGAAAAATTAAATTAACTATTGCTAAAGAT
AAACACAATATATCCTGCTCTACCGTCGTGCCATGGCAAAGAATAGCTTT
TAAAAGTCGTTTCTTTCAAGCCTTTCTTTAAATGAAGCGATATAGTCTAC
CCTTTGTCAGACTTTGTATATGCATATAAAGCATTCCATTGTTTATAAAC
ATTAGAGCTATTGTTTTAGGTATCACCAAATGAGTCAGGGTTTGCTTATA
AGTGTTATGTTTCTAGAAAATAAAATGAATCTCATAGTAAGTAGTCTAAT
AAACGGGGGTTGGAGGCACTTAGAGTAAATAGCAGATAGAAAAGAGATCG
GATAATAAAAGAGGATAAAATCTTGACATAAGAATCAGCTTTCTACCACG
CATAAAGAGGAGAGGATCGTTTTCAAATGATCAACAACCACTTAATATCC
TTGATTGTTCTTTCTGTGTGCAAATATAGTTCAACCCCACGCGAGATTCA
CAATTAAAGAATACGGTACACAGAATTTTCGATGGTTCTTAGAAAAAGTA
AATGCTGAAAGATTGAAACCGCATTTGCTAACTGACCTATCAAATTATCC
CAAAAATTCGAAAGGGAAAATCCTTAGTGGTTTGTATCAACAATCGATTA
GCTGCTACCTACTGCACTCAAAAGGGCTAGCTAAGACTCTTGTTCCTAAA
CCCCAAGACTAAAAAAACACCAAACCTTTTTGAAATGGTCGATTCACCAT
CAATTTTTTTTCAACTCTAATGGGACTAATAGTCCAGGATAGCATTATCG
AAACCCCTACAAATCAAGCATTCCCAAAAAGTAACAAAAACTAATTCGGT
TCCGTGATTCTCTTTATACCTATCATCCTTTAAAAACCTATGGAGGCTAG
GTTAGAGATTACCAAGATGGATTGACGTCAAATTTTTTAAGGTGATGTAA
TGATTCCATTGATATAGACGCAGCCATTTTGGCATTTTCCTTCCTTGTAT
AATCGATCCAATTCCCTTGTGTCGTTCAAAGATCGAGAGGTGTATTATTT
TATTTGGAGATTTAGAATTCATAAGTGACATACTGAATTCAAATAACATT
TTTTTGTTTGACAGAAAACATTTATAATGGGCTATTCCAGAAAAAGTTTG
TACCCCTTATGTTGAGGAGACCCCCTGGATTTTTTCTAATTTTTCAGGAC
CCACCTTGGATTTTTTCTCTCCTTTCTTCGGACAACCCTGGATTTTCGAC
CTCATTATCGGATTTATAATTCAAAAGACCAGACCTGACCCTGGATTCTT
TATTTTCCAGACCACCCTGGACGTCACATCTGCTCAATATAGGGGGTACA
GACTCTGGAATAGCCCAATTTTGAAAACAGCAAGAGTGAGTTTGTCGTCC
ATCTTCTATTTGGATCAGAAGATATCTCAGTTTTTCTTCTATGTGTGTAA
ACTAACGCAGATCCGTATTACGACAAATGATTTTCTGTCTACTTTTATAG
CTGTAACTCGAAAGATGCATACAAGTACCCTTGCTTTCCGATCAAGTTTA
CAGACTATGGCTCCAAATGTACTCCTTTCACTCGTTCACAACCTATTTGT
CAAAAAGCACCAGCGGGTAGACGCACAGACAGACAGATAGCCAACTTGAT
TACATCTTTTGTTGATCTATCACAAGTTTATGGAGCTTCTATTGAACATG
CCAAGAAATTGAGGAAAAACGATGGTATGTACTTAGTCATTTAGTTAAAA
GTTAAATGCTTGTTATGAAACCTTTCAAATTTCAAAAGCGTGGACTACCA
GTTTTTTTGGAACAGACTTTAGTTTAGAATGTTACAATCATCGACAAAAT
ATTTGAGACAAAGGGGAGCTCCCGGTGAAATTTTAAACACCACAAATGAT
TTTGAAGCGCCTTAAACTACAGTTGGAAAGTAGAGTTGTAACTCTGAGTT
TTAACATGAGACTTAAGACTTAGTATCCTTAGGATCTCAGGATTTAAAAG
CTCAAATTTGCTCGAATAAGGCTTGGAATATAGCCTAGAAGCCAGCAAAC
CCCTCTAAAATCGAAATATTCAATGAAAGAAAGTGGAAGTGCTAAAATAG
CAATTCTCGCCCGAACTTTAAATTCTGAAAAACGTTAAAATGCACTAAAC
TCTCAATATATTTCGACGATGATCGTAGATCAAAGAATTAAATGGATCCT
TTGTTCTATAGGTTCCGGTGAAATGGCCATGCGGTCTGGTAATCTTCTTC
CATTATCAAACGAACCATGTGACACAATTGGAGGCTGTTCAATGGCCGGT
GATCCGAGAGCTGATGAAAACATTGCATTATATTCTATGCATACAGTATG
GATTCGAGAACACAATCGTGTTGTTAAGAAGCTGAGAAAAAATCATAAGA
CATGGTCCGGTGAAAAACTTTATCAGGTATAGGTCCTTTTGACTGGCTCG
GTTTACCTACAAATCAAAGGCTAAGATGTTGAAAGAAACCCTCATTTAAG
TTTGAAATTTTGGTGGATTTATGGCATTTAACGGATTCGGTACATTCTGC
CAAATCAAGCACGGGTTTTACCATCGTCTGCTGAATTAAATCTCTCGACA
TCATGCTTTTCCATTCCTTAAACGGATTTTTGTTTGTCAAATATTGATTT
TAGGCTACCAAATTAAATTTCCACAAGCTTAAATTTTTCCAGCTATTCGC
CAAATTTACCTTCCACAAAAATCTCTTGAGTTAAGGTATTTTTTACTTTA
TTTTTCTGGTTTACCTGATTCGCTCTAGAAACGAATTTCAACCTCGAAAG
TCATTTCTTTACATTTTCCACATTTAGGAAGCACGAAAGATTGTGATTGC
TGAATATCAACATATCATTTTCAACGACTGGGTCCCACGTATCGTTGATA
TAGGACCTTACACTGGGTACAGCTCACGTTATGACGCAACCCTTATTAAT
GCTTTCTCAACTGCTGCTTTCCGGTTCGGACACAGTTTAGTACCAAACGA
ATGGCAACAATGCAACTCAAATTATGATAAAATCGCAAAAGATATAAGTT
TACAAAGTTCATTTTTCAATATTGGCAGTATCAATCAAAGAGGAATAGAA
CCAACTGTGTATGGTCTCATGGCAAACCAATCAAATCAAATGGATACTAA
CTTTGCTTTTGATCTTGTTCGCCGTTTGTTTGTACCACCAGGCCATCATG
AACATCACGATTTGACAGCTTTGAATATCCAACGAGGGCGTGATCACGGG
TTACCGACTTATGGTGCGTGGCGTAAATATTGCCGCCTACCGCCCATCTC
TAGCTACAAGGATCTGGAACAATACATGTCAATAGAGAGTGTGAAAAGCT
TCCAAAAGTTATACAGTCATCCGAATGATATTGATCTTTTTGCCGCTGGT
ATTGCTGAGCACAATGTACCAAGATTCCAAACTGGACCGATATTCAGATG
TTTGTTCTGGCACCAATTCAAACGATTAAGGGAAGGAGATCGATACTATT
ATCTCAATCCTGGTGTCTTCACGCATGCTCAACGACGTGAATTGACCAAA
ACATCCATGGCGAAAATCTTGTGTAATAATTTGAAT

Coding sequence (CDS) from alignment at sc0000317:272984..279269-

>TCONS_00019053 ID=TCONS_00019053|Name=TCONS_00019053|organism=Clytia hemisphaerica|type=CDS|length=9666bp|location=Sequence derived from alignment at sc0000317:272984..279269- (Clytia hemisphaerica)
GAAGCACGAAAGATTGTGATTGCTGAATATCAACATATCATTTTCAACGA
CTGGGTCCCACGTATCGTTGATATAGGACCTTACACTGGGTACAGCTCAC
GTTATGACGCAACCCTTATTAATGCTTTCTCAACTGCTGCTTTCCGGTTC
GGACACAGTTTAGTACCAAACGAATGGCAACAATGCAACTCAAATTATGA
TAAAATCGCAAAAGATATAAGTTTACAAAGTTCATTTTTCAATATTGGCA
GTATCAATCAAAGAGGAATAGAACCAACTGTGTATGGTCTCATGGCAAAC
CAATCAAATCAAATGGATACTAACTTTGCTTTTGATCTTGTTCGCCGTTT
GTTTGTACCACCAGGCCATCATGAACATCACGATTTGACAGCTTTGAATA
TCCAACGAGGGCGTGATCACGGGTTACCGACTTATGGTGCGTGGCGTAAA
TATTGCCGCCTACCGCCCATCTCTAGCTACAAGGATCTGGAACAATACAT
GTCAATAGAGAGTGTGAAAAGCTTCCAAAAGTTATACAGTCATCCGAATG
ATATTGATCTTTTTGCCGCTGGTATTGCTGAGCACAATGTACCAAGATTC
CAAACTGGACCGATATTCAGATGTTTGTTCTGGCACCAATTCAAACGATT
AAGGGAAGGAGATCGATACTATTATCTCAATCCTGGTGTCTTCACGCATG
CTCAACGACGTGAATTGACCAAAACATCCATGGCGAAAATCTTGTGTAAT
AATTTGAATGTTCCGGTGAAATGGCCATGCGGTCTGGTAATCTTCTTCCA
TTATCAAACGAACCATGTGACACAATTGGAGGCTGTTCAATGGCCGGTGA
TCCGAGAGCTGATGAAAACATTGCATTATATTCTATGCATACAGTATGGA
TTCGAGAACACAATCGTGTTGTTAAGAAGCTGAGAAAAAATCATAAGACA
TGGTCCGGTGAAAAACTTTATCAGCTGTAACTCGAAAGATGCATACAAGT
ACCCTTGCTTTCCGATCAAGTTTACAGACTATGGCTCCAAATGTACTCCT
TTCACTCGTTCACAACCTATTTGTCAAAAAGCACCAGCGGGTAGACGCAC
AGACAGACAGATAGCCAACTTGATTACATCTTTTGTTGATCTATCACAAG
TTTATGGAGCTTCTATTGAACATGCCAAGAAATTGAGGAAAAACGATGGG
GCAAATTACGTTGATCAACGTCAGGTGGACACGCCCAGAGGATTCCCTGG
TACCAAACCACGTGTACCGCCCGCCAACAAAGTCTCACTTGCTGTATTTC
ACGCCAAACAAAATGACGATGGAAATAGATGGAAATTATCCACTTTGTTC
ATGACCATGGGACAATTCCTCGATCACGATTTTGCATTAGTCGGGCATTC
GAAATGCAAAGCTCAAAGGAGATGCTCACAGTGACTGTATCAAAGGCGTT
GTAGCGCCTTCATGTAAACCCTACTATTACGTCACAAAGAGTTATCGAAG
ATATGATGGTTTATGTAATAATCTGAGGTTTCCACATGTTGGTGCAGGTC
GTACACCACTTCGGCGATTAATATATGTTGTTCATTTCCGTAGCTTTTGC
TTATGAAACAGGAAGCACGAAAGATTGTGATTGCTGAATATCAACATATC
ATTTTCAACGACTGGGTCCCACGTATCGTTGATATAGGACCTTACACTGG
GTACAGCTCACGTTATGACGCAACCCTTATTAATGCTTTCTCAACTGCTG
CTTTCCGGTTCGGACACAGTTTAGTACCAAACGAATGGCAACAATGCAAC
TCAAATTATGATAAAATCGCAAAAGATATAAGTTTACAAAGTTCATTTTT
CAATATTGGCAGTATCAATCAAAGAGGAATAGAACCAACTGTGTATGGTC
TCATGGCAAACCAATCAAATCAAATGGATACTAACTTTGCTTTTGATCTT
GTTCGCCGTTTGTTTGTACCACCAGGCCATCATGAACATCACGATTTGAC
AGCTTTGAATATCCAACGAGGGCGTGATCACGGGTTACCGACTTATGGTG
CGTGGCGTAAATATTGCCGCCTACCGCCCATCTCTAGCTACAAGGATCTG
GAACAATACATGTCAATAGAGAGTGTGAAAAGCTTCCAAAAGTTATACAG
TCATCCGAATGATATTGATCTTTTTGCCGCTGGTATTGCTGAGCACAATG
TACCAAGATTCCAAACTGGACCGATATTCAGATGTTTGTTCTGGCACCAA
TTCAAACGATTAAGGGAAGGAGATCGATACTATTATCTCAATCCTGGTGT
CTTCACGCATGCTCAACGACGTGAATTGACCAAAACATCCATGGCGAAAA
TCTTGTGTAATAATTTGAATGTTCCGGTGAAATGGCCATGCGGTCTGGTA
ATCTTCTTCCATTATCAAACGAACCATGTGACACAATTGGAGGCTGTTCA
ATGGCCGGTGATCCGAGAGCTGATGAAAACATTGCATTATATTCTATGCA
TACAGTATGGATTCGAGAACACAATCGTGTTGTTAAGAAGCTGAGAAAAA
ATCATAAGACATGGTCCGGTGAAAAACTTTATCAGCTGTAACTCGAAAGA
TGCATACAAGTACCCTTGCTTTCCGATCAAGTTTACAGACTATGGCTCCA
AATGTACTCCTTTCACTCGTTCACAACCTATTTGTCAAAAAGCACCAGCG
GGTAGACGCACAGACAGACAGATAGCCAACTTGATTACATCTTTTGTTGA
TCTATCACAAGTTTATGGAGCTTCTATTGAACATGCCAAGAAATTGAGGA
AAAACGATGGGGCAAATTACGTTGATCAACGTCAGGTGGACACGCCCAGA
GGATTCCCTGGTACCAAACCACGTGTACCGCCCGCCAACAAAGTCTCACT
TGCTGTATTTCACGCCAAACAAAATGACGATGGAAATAGATGGAAATTAT
CCACTTTGTTCATGACCATGGGACAATTCCTCGATCACGATTTTGCATTA
GTCGGGCATTCGAAATGCAAAGCTCAAAGGAGATGCTCACAGTGACTGTA
TCAAAGGCGTTGTAGCGCCTTCATGTAAACCCTACTATTACGTCACAAAG
AGTTATCGAAGATATGATGGTTTATGTAATAATCTGAGGTTTCCACATGT
TGGTGCAGGTCGTACACCACTTCGGCGATTAATATATGTTGTTCATTTCC
GTAGCTTTTGCTTATGAAACAGGAAGCACGAAAGATTGTGATTGCTGAAT
ATCAACATATCATTTTCAACGACTGGGTCCCACGTATCGTTGATATAGGA
CCTTACACTGGGTACAGCTCACGTTATGACGCAACCCTTATTAATGCTTT
CTCAACTGCTGCTTTCCGGTTCGGACACAGTTTAGTACCAAACGAATGGC
AACAATGCAACTCAAATTATGATAAAATCGCAAAAGATATAAGTTTACAA
AGTTCATTTTTCAATATTGGCAGTATCAATCAAAGAGGAATAGAACCAAC
TGTGTATGGTCTCATGGCAAACCAATCAAATCAAATGGATACTAACTTTG
CTTTTGATCTTGTTCGCCGTTTGTTTGTACCACCAGGCCATCATGAACAT
CACGATTTGACAGCTTTGAATATCCAACGAGGGCGTGATCACGGGTTACC
GACTTATGGTGCGTGGCGTAAATATTGCCGCCTACCGCCCATCTCTAGCT
ACAAGGATCTGGAACAATACATGTCAATAGAGAGTGTGAAAAGCTTCCAA
AAGTTATACAGTCATCCGAATGATATTGATCTTTTTGCCGCTGGTATTGC
TGAGCACAATGTACCAAGATTCCAAACTGGACCGATATTCAGATGTTTGT
TCTGGCACCAATTCAAACGATTAAGGGAAGGAGATCGATACTATTATCTC
AATCCTGGTGTCTTCACGCATGCTCAACGACGTGAATTGACCAAAACATC
CATGGCGAAAATCTTGTGTAATAATTTGAATGTTCCGGTGAAATGGCCAT
GCGGTCTGGTAATCTTCTTCCATTATCAAACGAACCATGTGACACAATTG
GAGGCTGTTCAATGGCCGGTGATCCGAGAGCTGATGAAAACATTGCATTA
TATTCTATGCATACAGTATGGATTCGAGAACACAATCGTGTTGTTAAGAA
GCTGAGAAAAAATCATAAGACATGGTCCGGTGAAAAACTTTATCAGCTGT
AACTCGAAAGATGCATACAAGTACCCTTGCTTTCCGATCAAGTTTACAGA
CTATGGCTCCAAATGTACTCCTTTCACTCGTTCACAACCTATTTGTCAAA
AAGCACCAGCGGGTAGACGCACAGACAGACAGATAGCCAACTTGATTACA
TCTTTTGTTGATCTATCACAAGTTTATGGAGCTTCTATTGAACATGCCAA
GAAATTGAGGAAAAACGATGGGGCAAATTACGTTGATCAACGTCAGGTGG
ACACGCCCAGAGGATTCCCTGGTACCAAACCACGTGTACCGCCCGCCAAC
AAAGTCTCACTTGCTGTATTTCACGCCAAACAAAATGACGATGGAAATAG
ATGGAAATTATCCACTTTGTTCATGACCATGGGACAATTCCTCGATCACG
ATTTTGCATTAGTCGGGCATTCGAAATGCAAAGCTCAAAGGAGATGCTCA
CAGTGACTGTATCAAAGGCGTTGTAGCGCCTTCATGTAAACCCTACTATT
ACGTCACAAAGAGTTATCGAAGATATGATGGTTTATGTAATAATCTGAGG
TTTCCACATGTTGGTGCAGGTCGTACACCACTTCGGCGATTAATATATGT
TGTTCATTTCCGTAGCTTTTGCTTATGAAACAGGAAGCACGAAAGATTGT
GATTGCTGAATATCAACATATCATTTTCAACGACTGGGTCCCACGTATCG
TTGATATAGGACCTTACACTGGGTACAGCTCACGTTATGACGCAACCCTT
ATTAATGCTTTCTCAACTGCTGCTTTCCGGTTCGGACACAGTTTAGTACC
AAACGAATGGCAACAATGCAACTCAAATTATGATAAAATCGCAAAAGATA
TAAGTTTACAAAGTTCATTTTTCAATATTGGCAGTATCAATCAAAGAGGA
ATAGAACCAACTGTGTATGGTCTCATGGCAAACCAATCAAATCAAATGGA
TACTAACTTTGCTTTTGATCTTGTTCGCCGTTTGTTTGTACCACCAGGCC
ATCATGAACATCACGATTTGACAGCTTTGAATATCCAACGAGGGCGTGAT
CACGGGTTACCGACTTATGGTGCGTGGCGTAAATATTGCCGCCTACCGCC
CATCTCTAGCTACAAGGATCTGGAACAATACATGTCAATAGAGAGTGTGA
AAAGCTTCCAAAAGTTATACAGTCATCCGAATGATATTGATCTTTTTGCC
GCTGGTATTGCTGAGCACAATGTACCAAGATTCCAAACTGGACCGATATT
CAGATGTTTGTTCTGGCACCAATTCAAACGATTAAGGGAAGGAGATCGAT
ACTATTATCTCAATCCTGGTGTCTTCACGCATGCTCAACGACGTGAATTG
ACCAAAACATCCATGGCGAAAATCTTGTGTAATAATTTGAATGTTCCGGT
GAAATGGCCATGCGGTCTGGTAATCTTCTTCCATTATCAAACGAACCATG
TGACACAATTGGAGGCTGTTCAATGGCCGGTGATCCGAGAGCTGATGAAA
ACATTGCATTATATTCTATGCATACAGTATGGATTCGAGAACACAATCGT
GTTGTTAAGAAGCTGAGAAAAAATCATAAGACATGGTCCGGTGAAAAACT
TTATCAGCTGTAACTCGAAAGATGCATACAAGTACCCTTGCTTTCCGATC
AAGTTTACAGACTATGGCTCCAAATGTACTCCTTTCACTCGTTCACAACC
TATTTGTCAAAAAGCACCAGCGGGTAGACGCACAGACAGACAGATAGCCA
ACTTGATTACATCTTTTGTTGATCTATCACAAGTTTATGGAGCTTCTATT
GAACATGCCAAGAAATTGAGGAAAAACGATGGGGCAAATTACGTTGATCA
ACGTCAGGTGGACACGCCCAGAGGATTCCCTGGTACCAAACCACGTGTAC
CGCCCGCCAACAAAGTCTCACTTGCTGTATTTCACGCCAAACAAAATGAC
GATGGAAATAGATGGAAATTATCCACTTTGTTCATGACCATGGGACAATT
CCTCGATCACGATTTTGCATTAGTCGGGCATTCGAAATGCAAAGCTCAAA
GGAGATGCTCACAGTGACTGTATCAAAGGCGTTGTAGCGCCTTCATGTAA
ACCCTACTATTACGTCACAAAGAGTTATCGAAGATATGATGGTTTATGTA
ATAATCTGAGGTTTCCACATGTTGGTGCAGGTCGTACACCACTTCGGCGA
TTAATATATGTTGTTCATTTCCGTAGCTTTTGCTTATGAAACAGGAAGCA
CGAAAGATTGTGATTGCTGAATATCAACATATCATTTTCAACGACTGGGT
CCCACGTATCGTTGATATAGGACCTTACACTGGGTACAGCTCACGTTATG
ACGCAACCCTTATTAATGCTTTCTCAACTGCTGCTTTCCGGTTCGGACAC
AGTTTAGTACCAAACGAATGGCAACAATGCAACTCAAATTATGATAAAAT
CGCAAAAGATATAAGTTTACAAAGTTCATTTTTCAATATTGGCAGTATCA
ATCAAAGAGGAATAGAACCAACTGTGTATGGTCTCATGGCAAACCAATCA
AATCAAATGGATACTAACTTTGCTTTTGATCTTGTTCGCCGTTTGTTTGT
ACCACCAGGCCATCATGAACATCACGATTTGACAGCTTTGAATATCCAAC
GAGGGCGTGATCACGGGTTACCGACTTATGGTGCGTGGCGTAAATATTGC
CGCCTACCGCCCATCTCTAGCTACAAGGATCTGGAACAATACATGTCAAT
AGAGAGTGTGAAAAGCTTCCAAAAGTTATACAGTCATCCGAATGATATTG
ATCTTTTTGCCGCTGGTATTGCTGAGCACAATGTACCAAGATTCCAAACT
GGACCGATATTCAGATGTTTGTTCTGGCACCAATTCAAACGATTAAGGGA
AGGAGATCGATACTATTATCTCAATCCTGGTGTCTTCACGCATGCTCAAC
GACGTGAATTGACCAAAACATCCATGGCGAAAATCTTGTGTAATAATTTG
AATGTTCCGGTGAAATGGCCATGCGGTCTGGTAATCTTCTTCCATTATCA
AACGAACCATGTGACACAATTGGAGGCTGTTCAATGGCCGGTGATCCGAG
AGCTGATGAAAACATTGCATTATATTCTATGCATACAGTATGGATTCGAG
AACACAATCGTGTTGTTAAGAAGCTGAGAAAAAATCATAAGACATGGTCC
GGTGAAAAACTTTATCAGCTGTAACTCGAAAGATGCATACAAGTACCCTT
GCTTTCCGATCAAGTTTACAGACTATGGCTCCAAATGTACTCCTTTCACT
CGTTCACAACCTATTTGTCAAAAAGCACCAGCGGGTAGACGCACAGACAG
ACAGATAGCCAACTTGATTACATCTTTTGTTGATCTATCACAAGTTTATG
GAGCTTCTATTGAACATGCCAAGAAATTGAGGAAAAACGATGGGGCAAAT
TACGTTGATCAACGTCAGGTGGACACGCCCAGAGGATTCCCTGGTACCAA
ACCACGTGTACCGCCCGCCAACAAAGTCTCACTTGCTGTATTTCACGCCA
AACAAAATGACGATGGAAATAGATGGAAATTATCCACTTTGTTCATGACC
ATGGGACAATTCCTCGATCACGATTTTGCATTAGTCGGGCATTCGAAATG
CAAAGCTCAAAGGAGATGCTCACAGTGACTGTATCAAAGGCGTTGTAGCG
CCTTCATGTAAACCCTACTATTACGTCACAAAGAGTTATCGAAGATATGA
TGGTTTATGTAATAATCTGAGGTTTCCACATGTTGGTGCAGGTCGTACAC
CACTTCGGCGATTAATATATGTTGTTCATTTCCGTAGCTTTTGCTTATGA
AACAGGAAGCACGAAAGATTGTGATTGCTGAATATCAACATATCATTTTC
AACGACTGGGTCCCACGTATCGTTGATATAGGACCTTACACTGGGTACAG
CTCACGTTATGACGCAACCCTTATTAATGCTTTCTCAACTGCTGCTTTCC
GGTTCGGACACAGTTTAGTACCAAACGAATGGCAACAATGCAACTCAAAT
TATGATAAAATCGCAAAAGATATAAGTTTACAAAGTTCATTTTTCAATAT
TGGCAGTATCAATCAAAGAGGAATAGAACCAACTGTGTATGGTCTCATGG
CAAACCAATCAAATCAAATGGATACTAACTTTGCTTTTGATCTTGTTCGC
CGTTTGTTTGTACCACCAGGCCATCATGAACATCACGATTTGACAGCTTT
GAATATCCAACGAGGGCGTGATCACGGGTTACCGACTTATGGTGCGTGGC
GTAAATATTGCCGCCTACCGCCCATCTCTAGCTACAAGGATCTGGAACAA
TACATGTCAATAGAGAGTGTGAAAAGCTTCCAAAAGTTATACAGTCATCC
GAATGATATTGATCTTTTTGCCGCTGGTATTGCTGAGCACAATGTACCAA
GATTCCAAACTGGACCGATATTCAGATGTTTGTTCTGGCACCAATTCAAA
CGATTAAGGGAAGGAGATCGATACTATTATCTCAATCCTGGTGTCTTCAC
GCATGCTCAACGACGTGAATTGACCAAAACATCCATGGCGAAAATCTTGT
GTAATAATTTGAATGTTCCGGTGAAATGGCCATGCGGTCTGGTAATCTTC
TTCCATTATCAAACGAACCATGTGACACAATTGGAGGCTGTTCAATGGCC
GGTGATCCGAGAGCTGATGAAAACATTGCATTATATTCTATGCATACAGT
ATGGATTCGAGAACACAATCGTGTTGTTAAGAAGCTGAGAAAAAATCATA
AGACATGGTCCGGTGAAAAACTTTATCAGCTGTAACTCGAAAGATGCATA
CAAGTACCCTTGCTTTCCGATCAAGTTTACAGACTATGGCTCCAAATGTA
CTCCTTTCACTCGTTCACAACCTATTTGTCAAAAAGCACCAGCGGGTAGA
CGCACAGACAGACAGATAGCCAACTTGATTACATCTTTTGTTGATCTATC
ACAAGTTTATGGAGCTTCTATTGAACATGCCAAGAAATTGAGGAAAAACG
ATGGGGCAAATTACGTTGATCAACGTCAGGTGGACACGCCCAGAGGATTC
CCTGGTACCAAACCACGTGTACCGCCCGCCAACAAAGTCTCACTTGCTGT
ATTTCACGCCAAACAAAATGACGATGGAAATAGATGGAAATTATCCACTT
TGTTCATGACCATGGGACAATTCCTCGATCACGATTTTGCATTAGTCGGG
CATTCGAAATGCAAAGCTCAAAGGAGATGCTCACAGTGACTGTATCAAAG
GCGTTGTAGCGCCTTCATGTAAACCCTACTATTACGTCACAAAGAGTTAT
CGAAGATATGATGGTTTATGTAATAATCTGAGGTTTCCACATGTTGGTGC
AGGTCGTACACCACTTCGGCGATTAATATATGTTGTTCATTTCCGTAGCT
TTTGCTTATGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010673XLOC_010673Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019053-proteinTCONS_00019053-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019053-exon-sc0000317-1575043694:279231..279269TCONS_00019053-exon-sc0000317-1575043694:279231..279269Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1575043694:278648..278803TCONS_00019053-exon-sc0000317-1575043694:278648..278803Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1575043694:277710..277929TCONS_00019053-exon-sc0000317-1575043694:277710..277929Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1575043694:274846..275069TCONS_00019053-exon-sc0000317-1575043694:274846..275069Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1575043694:274144..274358TCONS_00019053-exon-sc0000317-1575043694:274144..274358Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1575043694:272984..273742TCONS_00019053-exon-sc0000317-1575043694:272984..273742Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1510915933:279231..279269TCONS_00019053-exon-sc0000317-1510915933:279231..279269Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1510915933:278648..278803TCONS_00019053-exon-sc0000317-1510915933:278648..278803Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1510915933:277710..277929TCONS_00019053-exon-sc0000317-1510915933:277710..277929Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1510915933:274846..275069TCONS_00019053-exon-sc0000317-1510915933:274846..275069Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1510915933:274144..274358TCONS_00019053-exon-sc0000317-1510915933:274144..274358Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1510915933:272984..273742TCONS_00019053-exon-sc0000317-1510915933:272984..273742Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1491911889:279231..279269TCONS_00019053-exon-sc0000317-1491911889:279231..279269Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1491911889:278648..278803TCONS_00019053-exon-sc0000317-1491911889:278648..278803Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1491911889:277710..277929TCONS_00019053-exon-sc0000317-1491911889:277710..277929Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1491911889:274846..275069TCONS_00019053-exon-sc0000317-1491911889:274846..275069Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1491911889:274144..274358TCONS_00019053-exon-sc0000317-1491911889:274144..274358Clytia hemisphaericaexon
TCONS_00019053-exon-sc0000317-1491911889:272984..273742TCONS_00019053-exon-sc0000317-1491911889:272984..273742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:272984..279269 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176779	0	0.31459	0.0839025	1.02117	0.618887	0.916564	1.84032	4.32171	2.84501	3.45192	3.56498	1.78068	0.87254	0.358607	0	0.303336	0	0.322043	0.899034	0.2198	0.321523	0.31854	0.447677	0.515165	0.387175	0.519517	0	0.616688	0.456568
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019791Haem_peroxidase_animal
IPR010255Haem_peroxidase
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0004601peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Blast
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BLAST of TCONS_00019053 vs. Swiss-Prot (Human)
Match: PERT (Thyroid peroxidase OS=Homo sapiens GN=TPO PE=1 SV=4)

HSP 1 Score: 306.22 bits (783), Expect = 1.274e-92
Identity = 203/573 (35.43%), Postives = 295/573 (51.48%), Query Frame = 3 
Query:   51 SDCIKGVVAPSCKPYYYVTKSYRRYDGLCNNLRFPHVGAGRTPLRRLIWANYVDQRQVDTPRGF-PG---TKPRVPPANKVSLAVFHAKQNDDGNRWKLSTLFMTMGQFLDHDFALVGHSKCKAQ-----SCNSKDAYKYPCFPIKFTD-----YGSKCTPFTRSQPICQKAPAG-------RRTDRQIANLITSFVDLSQVYGASIEHAKKLRKNDGSGEMAMR-------SGNL-LPLSNE------------PCDTIGGCSMAGDPRADENIALYSMHTVWIREHNRVVKKLRKNHKTWSGEKLYQEARKIVIAEYQHIIFNDWVPRIVD-------IGPYTGYSSRYDATLINAFSTAAFRFGHSLVPNEWQQCNSNYDKIAK--DISLQSSFFNIGSI-NQRGIEPTVYGLMANQS--NQMDTNFAFDLVRRLFVPPGHHEHHDLTALNIQRGRDHGLPTYGAWRKYCRLPPISSYKDLEQYMSIESVKS-FQKLYSHPNDIDLFAAGIAEHNVPRFQTGPIFRCLFWHQFKRLREGDRYYYLNPGVFTHAQRRELTKTSMAKILCNN 1607
            S C+  ++ P C P   +   YR   G CNN   P  GA  T L R  W   V +     PRG+ PG       +PP  +V+  V         +  + S L M  GQ++DHD A    S  KA       C      + PCFPI+  +      G+ C PF RS   C     G           RQ  N +TSF+D S VYG+S    ++LR N  S E  +R       SG   LP                P +T G C +AGD RA E  +L ++HT+W+REHNR+   L+  +  WS + +YQEARK+V A +Q I   D++PRI+        +GPY GY S  + T+ N FSTAAFRFGH+ +    ++ ++++ +      + L  +FF+  ++    G++P + GL+A  +     D     +L  RLFV   +    DL ++N+QRGRDHGLP Y  WR++C LP + +  DL   ++  SV      LY HP++ID++  G+AE+ +PR +TGP+F CL   Q K LR+GD +++ N  VFT AQRREL K S+++++C+N
Sbjct:  131 SGCLPYMLPPKC-PNTCLANKYRPITGACNNRDHPRWGASNTALAR--WLPPVYEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHDIAFTPQSTSKAAFGGGADCQMTCENQNPCFPIQLPEEARPAAGTACLPFYRSSAACGTGDQGALFGNLSTANPRQQMNGLTSFLDASTVYGSSPALERQLR-NWTSAEGLLRVHARLRDSGRAYLPFVPPRAPAACAPEPGIPGETRGPCFLAGDGRASEVPSLTALHTLWLREHNRLAAALKALNAHWSADAVYQEARKVVGALHQIITLRDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFRFGHATIHPLVRRLDASFQEHPDLPGLWLHQAFFSPWTLLRGGGLDPLIRGLLARPAKLQVQDQLMNEELTERLFVL-SNSSTLDLASINLQRGRDHGLPGYNEWREFCGLPRLETPADLSTAIASRSVADKILDLYKHPDNIDVWLGGLAENFLPRARTGPLFACLIGKQMKALRDGDWFWWENSHVFTDAQRRELEKHSLSRVICDN 698
The following BLAST results are available for this feature:
BLAST of TCONS_00019053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PERT1.274e-9235.43Thyroid peroxidase OS=Homo sapiens GN=TPO PE=1 SV=... [more]
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