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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019099 ID=TCONS_00019099|Name=TCONS_00019099|organism=Clytia hemisphaerica|type=transcript|length=2150bp
agcgattctagctttacgatagtgccgcggatcatcaatggatagtattc
aattatcattatccctttattttcattcctagaacttaattgcaaaaaaa
aggaaaaatagaaaagttgtattttttactgctctattcacatagtgaat
ttgaaagatcttctatgtggcgcttttttgcaaacttcaaaaaactgatt
tttgtcccgcctttgcgggattttggctttagtgcttgagtgcagcatag
ggtacaaagtccaaatatacgtttcccgtaatttttgtatgaagagttag
gtctacactgactaATAGTttagacagttagtcacactaggaaaagcttt
cagaaaaaacaacatcagtcatctacaggatgtatNCCACACTAggaaaa
gctttcaaaaaaacaacatcagtcatctacaggatgtatttgcaacaaca
aggatgagaggtacctgaatcaagttcgcaagacatcagtcatctacagg
atgtatttgcaacaacaaggatgagagttacctgaatcaagttcgcaaga
catcagtcatctacaggatgtatttgcaacaacaaggatgagagttacct
gaatcaagttcgcaagacaattaattaaaacttgaaagtttgaaacaaaa
taaaacctgcagcagccaaaatcaaccaaccaaaatttgtcattcaattc
ccgagacagctctaaggccttgtttatatgataaagttaaaacaattccg
cacatgtaaatcaAGCTATTGTTAGATTTACTTGAAGATTCTAGAACAtg
aagactttttctttttgaaaaatctttttagaatttaaatatTGTTGCTT
TGAAATTTACGTCCTTTTTACCAATGAAATCATAATTAATACTGATGAAA
AGCAATCATTACTTTTTATTAAGTTCATAGCATCAAATACAATGGAAAAC
AAAGTAACAATAGTATTACGACTTATACGTTCTTTTGAACATAGAACAAT
AAGAAATGTTGTGTATCACGATATAGATTTGGATCTGTTGACATCGGAAT
TTATCAACTTTGTTAAAACAGACCTTAAAACAAAAACTTCACTACCGCCA
CCTTTTCGTACCTTCAAATATGACACAATGAAAGTTCAACACAAGGCTTT
TGGCTCAAAGACAAGTGATCCTGTCATTAATACATTTAATGATGATGAAC
TTATTCTTAATATGGAGAAAAGTTTGAGGGATAATGGTATTGTAAATGAA
ACAGAAATCTCCTTTTTTGTGTTGGATGATTATCGCAAGTATCAGAAAAA
TCCGCAAATTGCTTGGTGATGAGAATCGTAACGATGTAAAGGGTTtgctt
ttgtaatttcttcaTTGTGTTGATTTTTAAAACACGCTGTGTGGATAATA
CAGATAAATGAGACTTGGTTGGTAAAATGTATGGTTATGGCGCATTTACC
AGAATATTATTGAATGAGATTCCCAGAGGCTTGCCCAAAcacaatcaaat
tttttcaactcCTCCAATGTTTCCAGGCTTTTCACAATGATTAGTCTTTT
GGGAAGTTGTTTAACCGGAAACGACAGTTTTTAGAAGATGATCCTTCTTT
TACAACAAAGTTGGCACTGCTTGAGATTCCAGAATAGCTTGTCTTTTTGA
CCCAACTTTCATATATTTTAGAAACTTGCTTTAATTTTACCTTTACGTAC
ACACAATACATTGACATTTAAATACATTGATTTATTTGTCATATAGAATA
TAGAATTGGACTTGTAATCGGACTATCCCAAAATAGCTTTTTCCTCAAGT
TTTTTATCTGTATCAGGTATAAAAATTTATACTGCAGGGATTTTATGGCT
TAGACTTTATGGCTTAGACTTTCTCTTTTCAATCATTTATTTCAGTACCC
TTAAGTCTCTATTAAAACTGCAAATGCCTTTTCTAATTATCGCACAATTT
TGTGGAATTTATTTTTGGCaaatcaagaatattttcaaatttggcgAAAC
AAAAAATAGCGAATGACCCATTGTTTTGGTTAGTTGAAAGAggttttttc
atgaaaatctaGGCAAAGACgaaatataatttcaaatttgtaaataactG
ATTTTGTTGAATAACCATAAAATCCTAATTTGGAAGGAGGTGGGATAAGT Run BLAST on NCBI transcript from alignment at sc0000319:292519..294668+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019099 ID=TCONS_00019099|Name=TCONS_00019099|organism=Clytia hemisphaerica|type=transcript|length=2150bp|location=Sequence derived from alignment at sc0000319:292519..294668+ (Clytia hemisphaerica)
agcgattctagctttacgatagtgccgcggatcatcaatggatagtattc
aattatcattatccctttattttcattcctagaacttaattgcaaaaaaa
aggaaaaatagaaaagttgtattttttactgctctattcacatagtgaat
ttgaaagatcttctatgtggcgcttttttgcaaacttcaaaaaactgatt
tttgtcccgcctttgcgggattttggctttagtgcttgagtgcagcatag
ggtacaaagtccaaatatacgtttcccgtaatttttgtatgaagagttag
gtctacactgactaATAGTttagacagttagtcacactaggaaaagcttt
cagaaaaaacaacatcagtcatctacaggatgtatNCCACACTAggaaaa
gctttcaaaaaaacaacatcagtcatctacaggatgtatttgcaacaaca
aggatgagaggtacctgaatcaagttcgcaagacatcagtcatctacagg
atgtatttgcaacaacaaggatgagagttacctgaatcaagttcgcaaga
catcagtcatctacaggatgtatttgcaacaacaaggatgagagttacct
gaatcaagttcgcaagacaattaattaaaacttgaaagtttgaaacaaaa
taaaacctgcagcagccaaaatcaaccaaccaaaatttgtcattcaattc
ccgagacagctctaaggccttgtttatatgataaagttaaaacaattccg
cacatgtaaatcaAGCTATTGTTAGATTTACTTGAAGATTCTAGAACAtg
aagactttttctttttgaaaaatctttttagaatttaaatatTGTTGCTT
TGAAATTTACGTCCTTTTTACCAATGAAATCATAATTAATACTGATGAAA
AGCAATCATTACTTTTTATTAAGTTCATAGCATCAAATACAATGGAAAAC
AAAGTAACAATAGTATTACGACTTATACGTTCTTTTGAACATAGAACAAT
AAGAAATGTTGTGTATCACGATATAGATTTGGATCTGTTGACATCGGAAT
TTATCAACTTTGTTAAAACAGACCTTAAAACAAAAACTTCACTACCGCCA
CCTTTTCGTACCTTCAAATATGACACAATGAAAGTTCAACACAAGGCTTT
TGGCTCAAAGACAAGTGATCCTGTCATTAATACATTTAATGATGATGAAC
TTATTCTTAATATGGAGAAAAGTTTGAGGGATAATGGTATTGTAAATGAA
ACAGAAATCTCCTTTTTTGTGTTGGATGATTATCGCAAGTATCAGAAAAA
TCCGCAAATTGCTTGGTGATGAGAATCGTAACGATGTAAAGGGTTtgctt
ttgtaatttcttcaTTGTGTTGATTTTTAAAACACGCTGTGTGGATAATA
CAGATAAATGAGACTTGGTTGGTAAAATGTATGGTTATGGCGCATTTACC
AGAATATTATTGAATGAGATTCCCAGAGGCTTGCCCAAAcacaatcaaat
tttttcaactcCTCCAATGTTTCCAGGCTTTTCACAATGATTAGTCTTTT
GGGAAGTTGTTTAACCGGAAACGACAGTTTTTAGAAGATGATCCTTCTTT
TACAACAAAGTTGGCACTGCTTGAGATTCCAGAATAGCTTGTCTTTTTGA
CCCAACTTTCATATATTTTAGAAACTTGCTTTAATTTTACCTTTACGTAC
ACACAATACATTGACATTTAAATACATTGATTTATTTGTCATATAGAATA
TAGAATTGGACTTGTAATCGGACTATCCCAAAATAGCTTTTTCCTCAAGT
TTTTTATCTGTATCAGGTATAAAAATTTATACTGCAGGGATTTTATGGCT
TAGACTTTATGGCTTAGACTTTCTCTTTTCAATCATTTATTTCAGTACCC
TTAAGTCTCTATTAAAACTGCAAATGCCTTTTCTAATTATCGCACAATTT
TGTGGAATTTATTTTTGGCaaatcaagaatattttcaaatttggcgAAAC
AAAAAATAGCGAATGACCCATTGTTTTGGTTAGTTGAAAGAggttttttc
atgaaaatctaGGCAAAGACgaaatataatttcaaatttgtaaataactG
ATTTTGTTGAATAACCATAAAATCCTAATTTGGAAGGAGGTGGGATAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019099-exon-sc0000319-1491911889:292519..294668 | TCONS_00019099-exon-sc0000319-1491911889:292519..294668 | Clytia hemisphaerica | exon |
| TCONS_00019099-exon-sc0000319-1510915933:292519..294668 | TCONS_00019099-exon-sc0000319-1510915933:292519..294668 | Clytia hemisphaerica | exon |
| TCONS_00019099-exon-sc0000319-1575043694:292519..294668 | TCONS_00019099-exon-sc0000319-1575043694:292519..294668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:292519..294668 + |
Blast
BLAST of TCONS_00019099 vs. Swiss-Prot (Human)
Match: CB076 (UPF0538 protein C2orf76 OS=Homo sapiens GN=C2orf76 PE=1 SV=3) HSP 1 Score: 131.339 bits (329), Expect = 3.376e-35 Identity = 59/123 (47.97%), Postives = 88/123 (71.54%), Query Frame = 3
Query: 948 NKVTIVLRLIRSFEHRTIRNVVYHDIDLDLLTSEFINFVKTDLKTKTSLPPPFRTFKYDTMKVQHKAFGSKTSDPVINTFNDDELILNMEKSLRDNGIVNETEISFFVLDDYRKYQKNPQIAW 1316
+VTI +RLIRSFEHR + VVYH ++LD EFI F+K D+ +T+LPPPFR +KYD +K+ H+A SKT++ V++ +D+ L+L + +L+ GI +ETEI+FF +DY+ Y+ NP +W
Sbjct: 4 GEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
The following BLAST results are available for this feature:
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