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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019104 ID=TCONS_00019104|Name=TCONS_00019104|organism=Clytia hemisphaerica|type=transcript|length=2481bp
ATAAAATGGTCAGTCTGAATCTCGAAATCGAAATGACACGTTTACTTGTT
AGAGAAGTGTGTTgacttgtgtgttgaataaagTTTCAGATTTACAGCAC
GCCTCGAAAAACTTGTGATCAATCTATagaaatctattttgaaaaatgta
ccAGCCTTCAAACATTTAGatcTTGAATCTGGACCAACACCAAAGAAATA
ACACGTACTCGAAACAAGTATCATGCTGAAAATTATCGAAAATGTTTCCA
TATCTATACCAATGATGGTTCCCTTTCTACACTGAAATTCATATAACATT
GTATCAATTTGACCGAACTTTAAAGAATCATATGGTACTTGGTATTGTAA
TGAACGCAGCTAAATTTTCATGTTTCGAAaccattatattcaaatttttg
tgcGTGGAGGACCGGCAGTTGATCAAGATATAATCTCTTCAAACGAATTT
TTGTGAAACGAGATTTTTGTGAATATTTGACGGCTTTGCTGCTCCACGAG
TAAAACAGTTAAAGGCTCCTGTCAAAGTGCTATAACGATGTTATCTAAGT
GGAGCAGTGTTGAGTGGCAGTCAGATCGTCGAACAAAAAGGAACGAAACT
ATAAAACGAAAATCGATACCGAAAACCGAACATAAAGATAAAGATAGTGG
GAAAGACTTGTGGCATTTGGTATCACTTTAACTTTGTTTGGATTTTATTA
TGTTTGGAATTTTTTCTCGTGTTCATTATTTATATATGAGGTTTGGTGTT
TCGCAATTATGtagttcttttaaaactttatcAATGATATTAATAGTGAC
AGCGTTCTCTTTTCATTATGGTCATTATGGGTCTTATTTTCTCATACTTT
TTACAAATTAATATcattgaaaattcaaaagttttagaAAGATCGAAACG
TAGGTTCTGGATTTAAAACTAACAGTAGAATTTAATGTGAAGCCTGCATA
ATGATATTCAAAGATCGTTGGATTTGCTCAGATATTACACTAGCACAAAA
ATTAAACTTAATTAGAGTGGAACTAGAGTCAATCTAAAAATTTACATGAA
TCGCAACTTTTGGCACGACTCCTAGAAAATCTATGTTAATTGGTTTGAAT
TATCGGCATGATGCTTTTTATTCGTGTTTttctgtttgttgttgttggtg
TTCATGAAGTGAATTTCAACCGTACTTTAAAGCGCTAATCGGTCCTTTTT
GTTCATTTGCTAAGAATGCTTTGTTATACTATGTTATTAACCAAATATTT
CGAATCTAAAGGGATGAAATTTTGCCGAATTGTATGTTCGTTGGTATTGT
ACATTTTAAGGTGAACGAGTGGTTGCTGCAAAACACTTTGAACCGTCTCA
GGATTTCTTTTTATGTCTTTGGTAATTACTTGCGTTGTGAACCCTCCAAT
TTGTTttttgatacacgttttttataagagaatgtttttcaacttttttt
gagtttaaagcctacATGTTTTGAACATGTtcatattttcaccattttgt
gagtaattttgcccattttcctaagaaatcgagaGTTTAGTGCtcaaagc
ctcaaaatgttcctaacttcttaacattttggccaataaatgtttttata
gtttgttcttaaaaaagtgtatttgatgattttttgcgcCTTTGGTCAAA
ATCAATAGTTTTCGGACGGtttttatcaaatttctcaaaaaccacATTCT
CCATTTGGATTTCGTTGACATCCTTATGTGATTCCGTTGGTGTCGATTCT
TGATGTGTCGTTCGTCGCTCGAACGCTCTGACTGAATTATTAAACAATCA
TTGTGTTTTTACACCGATTTTTGGAAACCCAAGTATTCACTGTATTCTGT
ATACATGTAGTGCTGGTATGGTAGTCTGTCTTGTGCGAGGAGAGCTTAAA
GGAGTGGTATTTAAGAAAGACCGTTTGTTGTTACTAGCAACATGCACGTG
AATAAACATAAACCAGACCAGATCGGACAGAGAATTTCGAGACGTAATAA
ATCTATCATTACAAAAAtatgtttaaattcaaaaaagagcCTCAAAATTG
CAAATTACAAAAAGCGATAGCTAATTTTGGACGAGCcttcaattattttt
aactATTGGCAAGAACTATTTCAAGCtaattaaggtatgtgtacaccttt
tttccgattttttgtcaaaaaaatttttttcagtaaaagtggaagaaaag
ttactggatttcattttggtaaaattgcgatcttaaaatctttttttgat
ccagagttataaccatttaaattttaaaacaaagttcgtctcatgatgga
ttatttactcaaataattgtctctttcggaaacaacaaaaacaaaagaga
gaattcagctgatgtttattctcacctctattgaatagtaatatttttga
cacatttcactgattactcaaataaacagcaatccactcgttaaaaattt
caaattgatgtagaaaaaaacgaaattttaa Run BLAST on NCBI transcript from alignment at sc0000319:304426..311393+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019104 ID=TCONS_00019104|Name=TCONS_00019104|organism=Clytia hemisphaerica|type=transcript|length=6968bp|location=Sequence derived from alignment at sc0000319:304426..311393+ (Clytia hemisphaerica)
ATAAAATGGTCAGTCTGAATCTCGAAATCGAAATGACACGTTTACTTGTT
AGAGAAGTGTGTTgacttgtgtgttgaataaagTTTCAGATTTACAGCAC
GCCTCGAAAAACTTGTGATCAATCTATagaaatctattttgaaaaatgta
ccAGCCTTCAAACATTTAGGTAAGAACCTGATTAAAAAAGCTCTGCTTTA
TTCACTACttatttttaggagattttttgttttgggattggaaagatatt
ttcagaTTGAAATATTTCTGTTTTGATGCTACTGAAATTATGATGAAAGA
TTTTGTGATATTTTGAGTGATATCTTGGGATCTACTTACACCCATACAAA
TACGTAAggtaattttctcaaatatgtAAACGTTGTAGAACTAaactctt
tttctttattttttagatcTTGAATCTGGACCAACACCAAAGAAATAACA
CGTACTCGAAACAAGTATCATGCTGAAAATTATCGAAAATGTTTCCATAT
CTATACCAATGATGGTTCCCTTTCTACACTGAAATTCATATAACATTGTA
TCAATTTGACCGAACTTTAAAGAATCATATGGTACTTGGTATTGTAATGA
ACGCAGCTAAATTTTCATGTTTCGAAaccattatattcaaatttttgtgc
GTGGAGGACCGGCAGTTGATCAAGATATAATCTCTTCAAACGAATTTTTG
TGAAACGAGATTTTTGTGAATATTTGACGGCTTTGCTGCTCCACGAGTAA
AACAGTTAAAGGTACGTTGGATTTTTACGACttctgattttgatttttca
aaattttgatttttcaaaaaggaattgttaaggaactgctcaggctgaga
ataagtggatttgaaaataatgtacgttattgggactaatttgaccaaat
tttgatctttcaaggggcaaaaaggggtaggtagaaaacctggcccacct
ctctggcccaggccatatggcctacccttggcctaccctttggcccacct
tacaactctaaaaaagatttgattcttatcattctgaaaatctgcaaacc
aATTCTGAGGTTGGACTTTGGTTTTTCTGGCATTTAGAAAAACAACGAGA
CTGAAATAAACAAAAAAAAATAAAAAGTTTTTGAGTCTGCATTTTATACA
ACTGACATAGATTAAGGGGACCCCCGGGAGAGGGTCTGGTTAAGTCCTGT
ACGGGTGCCAAAAACCCCCGTAGCGCtgtttcttcaacttttcaggactt
cggagcccttttttcggaatcttcacccaaaaaaacataaagtatCAAAA
TCTGGCGAAAAACTTTGACGTTGACCCgaacccgattcgaactcgggATC
CCTAGTGCAAGAGCACAATGCGCTACCATTAGGCTGACTTCTATTAAAAT
AAGTTAAAAATTTAAGGGTGTCCATTGGTCAGATAGACAAGACCTACGTT
AAGAATAATTCACCCGCAATTTTGGCACTTCTTAAGAATAATTGACCCTC
TCATCcgaagtacactattcttataaaaaaagtgtttaattCTTAGAGCA
TTTAGAAGATTTGACCAATTGTTTGTCGTAAAACGGCTGATGCAATAACG
CCAACGCGCTTTATGATGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAATTATAGCGCA
TCCCGACGCACACATATCATTATAACCTGGTTGTCCGAGAAtaaaatcgg
ggaaaaaaatgtttgaaggtgGGCCAAAGGGTGGGCCAAGGGTAGGCCNN
caaaaagttcaaattttcctatgtagtaaggaactcgataaggaactttg
agactgaaattctctgtaaaaataaggaacaccaggctcagagcaaagtt
aaggttccttataaaaaaaaaacgtgtagtctaatttaacgcgtaaaata
attatttattgccacgcgttaaattagaaaaaccacgTGGTAGGGTTGCA
TTTTTAGCGAATATAAAGAAATCGATATTAACCGATAACAATCGAAAGCA
AGTAAGGTCTTAATTAGATTAGTTATTGATCACtatcgattattatcgat
taaaatcgattaataTAATATTGATTGATTTCCCGTTTCAATTTCATCGA
TTGGGTACGCCTGGTCTAAATAGctaacatgtttcaatgaaattttgtgt
gatggaagataacaggtttttaaaagaggaaagttattttcagaactctt
cttgcgcaaattttcttataaaaaacattttctctcgcGATcagtcagtg
tagacctaacttttcatacaaaaattacgggaaacacatatttggacttt
gtacgtCCTATGCTGCATGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNggcaaaaagttcaaattttcctatgtagtaagga
actcgataaggaactttgagactgaaattctctgtaaaaataaggaacac
caggctcagagcaaagttaaggttccttataaaaaaaagacgtgtattct
caaaaaaaagtaaagacgaaaaacaaaattttgttcatccTTGACGTTTC
GATACTTCTTATGTAAATTTTATGACCTATAATTGCCAGATgtgattttg
aaattgatttatTAACACGTTTTTGCTTGTAAGCTAACATTTGCTTGTGA
TCATGATACAAGAAGTATCGAAACGTCAAGGATgaaccaaaatttgtttt
tcgtctttactttttttttagaatatacTCTCTCAAACTTGGGTTCTTTT
GGTTAGAAACTTAGATTTTTGATCTGAAACTTGGCGATGATTTTTGTGAC
CGGCTTTGATGTTCTTACTCTAAGTCTGAACTATAAGCGATTTATATCTT
TGGGTTTGGTAACTTTTTCTGTCTTTTgtcaaaaaagttggtatttttcc
gtttgaatttttgattttatcagaACTGCATgttgttttttcaatttctt
tacgaatattttaactttcgtgtccgatttttcttttcaaagctCGGTAT
TATCGCTTCTATTTCACTCTCAATTCGATAGATTCTGTTTTTTTCTGTTC
GATTTTTATCTTGTCAGAGAGagtttgatatttttatctGTTCCAGTTTG
ATGGTtagtttttgttcaaatttgcttttttctcaatttcttccGAGATT
GATGTCATAATTTTTAAGGTCGATGGGTTTTTGTTTAAGTGTTTTACTGT
CTTGATCAAATGTTTTTGTAGAGTTTGATGATTTTTCTACCGAATCTTTT
TTCTGTGTTCTGTATTTTTACTTTGACTTGGATGGTTTTTGTCCCACTTT
GGGTGGCTTTATCTATGGTCCGAATTTGATAATTGATTtcttcgatttcg
attttttctgTCAGTTGGATAAGCACCGAATGAACTTAGCTCATTTTTGA
TCGATTTATCCTATTGTGAtgctttttttttcgaaatttgattGTTCAGT
CCCAAAtaagtttttcttgatttttcttgtccatttttttcttgtcaatt
ttccaaataagaatttttttgctttagcTCCTGACCATTTCTTTCAGAGT
CAGGTTTTCTTTTTCTGTAGATTTTAGTTTTCCGAATTTCGTGCTTTTTT
CTGTCCGAGCTCGTTCAttgaattttaagattttgttttCCATGCTGACc
tttccaaaattgaaatttttccaaGATTTCTCGGGTAACaaaatgcatgt
cccagaatttcattattttttccgcCCCAATTCTAGCCCCTAAACcgcta
aaccataacaaactatacattttggaagcatatttggatgtagaataccg
tattcagTGTAACTTGATTATTTCCTCAGCAGAATTcgagttttttaaag
aaaacgtgattatgacgtcattatttatgacgtcataattttaaaaagtt
gaatatctcgagaaatataaatcaaaactttatgaaattcgGAACAGTGA
TAAAAGACattgagatatttcaaaaaaatttgaaagtatttccgaaaatt
aatgacgtcagcagaaattgcaagaattccAATTTTTGCGATAAAGTGCC
GTCATAAATGACATCatatagcaaattttcaattttttgaaaaaaattct
cctgtTGATGAATTTGTCTCATCATTGTCCATCTATCATTGGTCtaatca
ggttttcttaagatattcTAATCatactgagaaaaaaattaagttacacc
gaaAACAGCCAAATACGTtcccaaaaatgtatagtttgttatggtttagg
gactggaactgggacggaaaattaatgcaattccgGGACATTCATTATAA
GTTACCCGAGTTTTCCAAGATTGAAATTTTCCAAGATTGAAATTTTTCCA
AGGTTGAATTTTTTCCAAGGTTGAATTTTTTCCAAGGTTGAATTTTTTCC
ATGATTGAATTTTTTCCATGATTGAATTTTTTCcatgattgaattttttt
ccatgattgaatttttttccatgattgaatttttttccatgattgaattt
ttttccatgattgaatttttttccatgaTTGAATTTTTTTCcaagattga
atttttttccaagattgaatttttttccaagattgaatttttttccaaga
ttgaatttttttccaagattgaatttttttccaagattcaccaagatttg
aaatatttttaaatgtttagAAATTATGtattgttttaagaaaatttttg
tgtaaaccattttggttttttCTAAATCATTTTTTCTATCTTTTGATTCA
GGCTCCTGTCAAAGTGCTATAACGATGTTATCTAAGTGGAGCAGTGTTGA
GTGGCAGTCAGATCGTCGAACAAAAAGGAACGAAACTATAAAACGAAAAT
CGATACCGAAAACCGAACATAAAGATAAAGATAGTGGGAAAGACTTGTGG
CATTTGGTATCACTTTAACTTTGTTTGGATTTTATTATGTTTGGAATTTT
TTCTCGTGTTCATTATTTATATATGAGGTTTGGTGTTTCGCAATTATGta
gttcttttaaaactttatcAATGATATTAATAGTGACAGCGTTCTCTTTT
CATTATGGTCATTATGGGTCTTATTTTCTCATACTTTTTACAAATTAATA
TcattgaaaattcaaaagttttagaAAGATCGAAACGTAGGTTCTGGATT
TAAAACTAACAGTAGAATTTAATGTGAAGCCTGCATAATGATATTCAAAG
ATCGTTGGATTTGCTCAGATATTACACTAGCACAAAAATTAAACTTAATT
AGAGTGGAACTAGAGTCAATCTAAAAATTTACATGAATCGCAACTTTTGG
CACGACTCCTAGAAAATCTATGTTAATTGGTTTGAATTATCGGCATGATG
CTTTTTATTCGTGTTTttctgtttgttgttgttggtgTTCATGAAGTGAA
TTTCAACCGTACTTTAAAGCGCTAATCGGTCCTTTTTGTTCATTTGCTAA
GAATGCTTTGTTATACTATGTTATTAACCAAATATTTCGAATCTAAAGGG
ATGAAATTTTGCCGAATTGTATGTTCGTTGGTATTGTACATTTTAAGGTG
AACGAGTGGTTGCTGCAAAACACTTTGAACCGTCTCAGGATTTCTTTTTA
TGTCTTTGGTAATTACTTGCGTTGTGAACCCTCCAATTTGTTttttgata
cacgttttttataagagaatgtttttcaactttttttgagtttaaagcct
acATGTTTTGAACATGTtcatattttcaccattttgtgagtaattttgcc
cattttcctaagaaatcgagaGTTTAGTGCtcaaagcctcaaaatgttcc
taacttcttaacattttggccaataaatgtttttatagtttgttcttaaa
aaagtgtatttgatgattttttgcgcCTTTGGTCAAAATCAATAGTTTTC
GGACGGtttttatcaaatttctcaaaaaccacATTCTCCATTTGGATTTC
GTTGACATCCTTATGTGATTCCGTTGGTGTCGATTCTTGATGTGTCGTTC
GTCGCTCGAACGCTCTGACTGAATTATTAAACAATCATTGTGTTTTTACA
CCGATTTTTGGAAACCCAAGTATTCACTGTATTCTGTATACATGTAGTGC
TGGTATGGTAGTCTGTCTTGTGCGAGGAGAGCTTAAAGGAGTGGTATTTA
AGAAAGACCGTTTGTTGTTACTAGCAACATGCACGTGAATAAACATAAAC
CAGACCAGATCGGACAGAGAATTTCGAGACGTAATAAATCTATCATTACA
AAAAtatgtttaaattcaaaaaagagcCTCAAAATTGCAAATTACAAAAA
GCGATAGCTAATTTTGGACGAGCcttcaattatttttaactATTGGCAAG
AACTATTTCAAGCtaattaaggtatgtgtacaccttttttccgatttttt
gtcaaaaaaatttttttcagtaaaagtggaagaaaagttactggatttca
ttttggtaaaattgcgatcttaaaatctttttttgatccagagttataac
catttaaattttaaaacaaagttcgtctcatgatggattatttactcaaa
taattgtctctttcggaaacaacaaaaacaaaagagagaattcagctgat
gtttattctcacctctattgaatagtaatatttttgacacatttcactga
ttactcaaataaacagcaatccactcgttaaaaatttcaaattgatgtag
aaaaaaacgaaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019104-exon-sc0000319-1491911889:304426..304594 | TCONS_00019104-exon-sc0000319-1491911889:304426..304594 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1510915933:304426..304594 | TCONS_00019104-exon-sc0000319-1510915933:304426..304594 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1575043694:304426..304594 | TCONS_00019104-exon-sc0000319-1575043694:304426..304594 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1491911889:304842..305186 | TCONS_00019104-exon-sc0000319-1491911889:304842..305186 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1510915933:304842..305186 | TCONS_00019104-exon-sc0000319-1510915933:304842..305186 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1575043694:304842..305186 | TCONS_00019104-exon-sc0000319-1575043694:304842..305186 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1491911889:309427..311393 | TCONS_00019104-exon-sc0000319-1491911889:309427..311393 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1510915933:309427..311393 | TCONS_00019104-exon-sc0000319-1510915933:309427..311393 | Clytia hemisphaerica | exon |
| TCONS_00019104-exon-sc0000319-1575043694:309427..311393 | TCONS_00019104-exon-sc0000319-1575043694:309427..311393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:304426..311393 + |
Blast
The following BLAST results are available for this feature:
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