TCONS_00019131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019131
Unique NameTCONS_00019131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019131 ID=TCONS_00019131|Name=TCONS_00019131|organism=Clytia hemisphaerica|type=transcript|length=548bp
gtttttaatatgACAAATAACAATCATACCAAATTTCAGACCCTAGCTCC
TTTCCAATCAAAAGAAAGTTATGAAGCCTGGTGAAAAACATACCCCCGAT
AATACTACAAcccaaaaagcctgataataatagggttaaaagtATTGTCT
GAAAATAACATTATTCACAAAATCATCAAACTTGAGTAAGGCAGTGACTG
TATGTAAGGTAGTGTGGAAAAGACTTTCATGATATTCCCATTTGACAGTG
GTTCGGAAAACTGACTTGTCGTTTGCACCTTCCATGTAAGTCATATCGAT
TGAGTGCATCAGATAATCTTCTCCAGAAACTAACTCGCATTTATAATCAG
GATAATTATTAAGAGTTACCACTTTGTTTTCATAAAAAGGTTTGGTCTCT
CCTGGCATTTTCTGAGCCAATTCTTTCATATCGGTTGAAATCCCAAAATA
CCTTCAGTCTGTAAATGAAAGAAGAAATTAGATTTTGTTACGACGTAATC
CAGCTGGCATACAACCTTGTTTCAACATTTATATAACGTTCAcaaacg
Run BLAST on NCBI

transcript from alignment at sc0000319:28857..29404

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019131 ID=TCONS_00019131|Name=TCONS_00019131|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at sc0000319:28857..29404 (Clytia hemisphaerica)
cgtttgTGAACGTTATATAAATGTTGAAACAAGGTTGTATGCCAGCTGGA
TTACGTCGTAACAAAATCTAATTTCTTCTTTCATTTACAGACTGAAGGTA
TTTTGGGATTTCAACCGATATGAAAGAATTGGCTCAGAAAATGCCAGGAG
AGACCAAACCTTTTTATGAAAACAAAGTGGTAACTCTTAATAATTATCCT
GATTATAAATGCGAGTTAGTTTCTGGAGAAGATTATCTGATGCACTCAAT
CGATATGACTTACATGGAAGGTGCAAACGACAAGTCAGTTTTCCGAACCA
CTGTCAAATGGGAATATCATGAAAGTCTTTTCCACACTACCTTACATACA
GTCACTGCCTTACTCAAGTTTGATGATTTTGTGAATAATGTTATTTTCAG
ACAATacttttaaccctattattatcaggctttttgggTTGTAGTATTAT
CGGGGGTATGTTTTTCACCAGGCTTCATAACTTTCTTTTGATTGGAAAGG
AGCTAGGGTCTGAAATTTGGTATGATTGTTATTTGTcatattaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010728XLOC_010728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019131-exon-sc0000319-1491911889:28857..29404TCONS_00019131-exon-sc0000319-1491911889:28857..29404Clytia hemisphaericaexon
TCONS_00019131-exon-sc0000319-1510915933:28857..29404TCONS_00019131-exon-sc0000319-1510915933:28857..29404Clytia hemisphaericaexon
TCONS_00019131-exon-sc0000319-1575043694:28857..29404TCONS_00019131-exon-sc0000319-1575043694:28857..29404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:28857..29404 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313962	0.408217	0.355484	0.463714	0.423396	0.557622	0.269099	0.251927	0.08819	0.109238	0.424115	0.627291	0.139204	0	0.118852	0.38264	0.707071	1.77155	0.667498	0.116415	1.21423	1.18451	0.359983	0.109092	2.58434	2.50702	0.430505	0.765744	0.116158	0.236693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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