TCONS_00019156 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019156
Unique Name	TCONS_00019156
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2140

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000320:19402..25507+

transcript sequence

>TCONS_00019156 ID=TCONS_00019156|Name=TCONS_00019156|organism=Clytia hemisphaerica|type=transcript|length=2140bp
ttattagatttaaaagaaaaatagaaagcAGGAAATAAAACTTCATAACC
AAGATGACGAACGTGACGATTCCAAACAAGCTTTTCTACAAAGAAGCCAT
GGACCAAGTTCATCTTTACAATTCCAAACTATTGTTGGATCGTCGATTGC
GAATGCCTTACATTGATAGTCAAACTGGCCTTGCACAACAAGATTGTCAT
TTATGGGTTAGTCGCGTGCAACGTTCCTCCCCCATCCGTGAGGGTCAAGT
GTACAGCTATCCATCACGTAGATGGCGCGTCAGAAAGCGGCCCGACTTTA
TCGGCACCAAAAGCAAGATAACGGAAAAACAAAAGAGTGAGGATGACGGC
CAagGAACGACAACCGAGACAACGGACAGCACTTTGGAAACGATAGAAGA
TTCGAAGACCGCTTTTGATACCGCCAGTCAATCTTCAACTACCACGGGCG
GTGGTGGCGGTGGAAATAGCAGTATTTATGAATATTATGACGACATGGCC
TTCGATTCTGAGTTTGATTCCGATGAGGAATTTGGTAgcagaaagaagaa
aaagaagggcGGCAAAGTGGCTAAAGGCAAGAAAAATGCCATGGCTTTGA
AATACGCAACCAGTATCAAGGTGATGTCGAAAGAAGAATTGAACCTTCTT
TCTTCTGAAGATCGAAAGAAGCCTTACGACTGTCAAATTTGCGGAAAGCG
TTACAAGAACTCGCAAGGTTTGCGGTATCACTATGAACATCACAATCACG
ATTTAGAAGAGCAGCAGCCCGCCCCTCCACCTGCCCCACTCTCATCCCTT
CCACCACCCATCGATCCGATCCCTCCGCCTATGCCCGCCCTGACCGTTCA
ACCGGTCGAAGCACCACCTCCCAATCATATTGCAGGAGCCAAACGGGCGA
AAGGAACGCCACCAAGTCATTTCTGTGACACCTGTCTGGGCAACGTGAAT
GCGAACAGACAAGGATCTGCGGAAAGATTAATTTGTTGCGCAGACTGTGG
NCCTGTCTGGGCAACGTGAATGCGAACAGACAAGGATCAGCGGAAAGATT
AATTTGTTGCGCAGACTGTGGCCGTTCAGCTCATCCATCGTGTTTGACAT
TCACGGAGAAGATGACAGAGCAAGTGCAGAAATACCGATGGCAATGTATC
GAATGTAAATCGTGCTGTTTGTGCGGCACCTCTGACAATGATGATCAGTT
GTTGTTTTGCGATGATTGTGATAGAGGCTACCATCTTTATTGTCTCAACC
CTCCCATGGGTGAACCTCCTGAAGGCCACTGGCAATGTCAACTTTGCAAC
TCACGCATCCAAGGTTTGGATATTTCCCGTGTTGCAGTCTTGCCGGAACA
CATGGATGCCGCCCTTCATGCCACGCCTTCCAAATGAACAAACAAGAAGA
CAGGTATCTtcatttggcccaaattttaggGTTGTTCTTTTATCATGTTA
GCGACGACATAATGACATCACAGCCTCTGTTCAATTCAGACACATGGAAA
AGTTGCTCGTCTTTTCTTTGTTATGGCATTTGTGAGACAAGATTTTGAAT
GGCCAACATAGGAAGCTCGTCGATAGTGAATAATGGCAgatatcaaaaaa
gtttcaatgattattttcaatgaaaacagTTAGTAACACATTTACCTTGT
TGCTAGAGACTTACCCGATGGGATATCTCTATTCATGGAAGATGAAACAT
TCAGCTGTTTTCACAGATCATACGAGCAGAAACATTACAGATATGTGTGA
TGGTGTttctattttatcttttttttatttatgaaacatttttaatggaa
taattttaaattacttGTGGTGTTTTTATATTTCACACTTTGAAATTGAT
GATTTGATATTAAGCTCCCTGATGGTTTGGGAACTTTTGTTTTGAGATAC
TGAGTCTTATTTTTCTAACGAAACAACATGATACCGTGCTTAGCTTAGAC
TATCAGTGCCTTTCAGTCATCCTTTCTTTCTTCCTTCCTCCAAATATCTC
CCTTATTGACGGTTGTCATGGATGGTTTCGTTGCTACTTGTTGAACAAAA
TCTCGCAATTCTCGTATCAACCGAATGAAAACTTTACTTTGGCGCTGTGC
TTTATCTTTAAAAAACGTTTGATTTGTTTTAAAAGGAAAC

Run BLAST on NCBI

transcript from alignment at sc0000320:19402..25507+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019156 ID=TCONS_00019156|Name=TCONS_00019156|organism=Clytia hemisphaerica|type=transcript|length=6106bp|location=Sequence derived from alignment at sc0000320:19402..25507+ (Clytia hemisphaerica)
ttattagatttaaaagaaaaatagaaagcAGGAAATAAAACTTCATAACC
AAGATGACGAACGTGACGATTCCAAACAAGCTTTTCTACAAAGAAGCCAT
GGACCAAGTTCATCTTTACAATTCCAAACTATTGTTGGATCGTCGATTGC
GAATGCCTTACATTGATAGTCAAACTGgtaaatgaaattttaatgGCATT
GTTCATCTTaagcaaaactatttttttgaGCAATAAAGTGATTAGAATAG
TCACGGTTTGCACAAATCTACGAGGCAGTGTTTTTAATTGTGACTAGTTG
CCCAAGTATAGAAAATCTGACGCAATAGCCCATCCACTATTATAATATGT
GTATTCGCTTTTTATAACAATAGTTAGAAATTTATGTCTAATTTTTACTA
CACTTTGAATTCTTTGATTTCgattttggaaagaaaagatttttgattgT
TGAAGTCACGCAGACGGTTGTATTGACCAAAATACTTGTTTCTCTTCCCT
CTCTCTGAATGTGTAGCATTATTTCTTTTCAGGCCTTGCACAACAAGATT
GTCATTTATGGGTTAGTCGCGTGCAACGTTCCTCCCCCATCCGTGAGGGT
CAAGTGTACAGCTATCCATCACGTAGATGGCGCGTCAGAAAGCGGCCCGA
CTTTATCGGCACCAAAAGCAAGATAACGGAAAAACAAAAGAGTGAGGATG
ACGGCCAaggtatttttctttgtttttacctCGAAAAAGTGAAGAACTGA
TGTTCTTAAGCATGCAAAGCTAACTCTCTCAAGTTGGACGGATTTTTTGG
GAAATAGTCTATTATATTTCCTTCCGTGAGTTTATCCGTGATGATTGTGG
TGTGAGTATCAATGACCCACATCAAGTTGTGGTACCATTAGGGAACTACT
TTTGGAGAGCAGCAATTAGGATTTTGTTTGGTCGGGATAGAAAATTACCC
ACATGTATGGATACCTCTGCCCACATCACTTTTcgagttttgaaactttt
tagaTAAGTTTGTTTGTTGGCCCCTTCGAGTGATACagtgttttattata
tatttctAAGGAACGACAACCGAGACAACGGACAGCACTTTGGAAACGAT
AGAAGATTCGAAGACCGCTTTTGATACCGCCAGTCAATCTTCAACTACCA
CGGGCGGTGGTGGCGGTGGAAATAGCAGTATTTATGAATATTATGACGAC
ATGGCCTTCGATTCTGAGTTTGATTCCGATGAGGAATTTGGTAgcagaaa
gaagaaaaagaagggcGGCAAAGTGGCTAAAGTAAGAAAAATAACACGCT
ATTGTAATGTTCTAACGCCCACTACAAAGTATTTAGAGTAAAAGCAATTA
GTTcttctttttaattaaaatattttcttacaggCATTAAAGTGCATAAT
GATGTTTTTAAAGAAGATGTTTTGAAATTGCATTCGCTCTCTATTCTACT
TGCTATTCCTTGGTCTGTTTGTTCGTCAACGGTTGAAGAtaacattttca
tttgaaaccaTGATTAATTCTCTTCACCCTGTTTTCAAATTCTTTAGCCT
TTCTCGTCCTTTTCTTATTCTCACATCATTTTTCGTCGTAAGTTTTTCAT
TAGGGCCATGGCAAACCAGTctaacatttcatccaacatgactttccaat
gttggatgaaatgcttgatggaaaaacttgcgttggatgaagcgaaaatc
aaggctggggcaaaccgatccaacattttATCCGACATGACTtgggaaaa
aatttaaaattcaaaaaataaagaaaaaagtactaCCAAACCAATGcaac
acgaaaaattacacaattcaatgaaagagcttctttgatctcgccgcaaa
tgttgaatgaaatgtttgatggcgaattttcatttctttccaaaaatttg
aattgacgcaaaccggtccaacatttcatccaacataaAAAAAAGGCATG
TTagatgaaatgttggattggTTTGCTCCATCCTTTACATCACAATTAAT
GCAGCAAACCTTTCCCCTTATCTTGCCTTGAATTCACCGAcaatcatttt
ttgaattttaacacaaaaacaatcttgaatttctcaaatgaaagaccctT
TACTAGGATCCTACCCATTAGTGAGATAAAGTTCgcataaaatgttttta
ttttaacgTTCACTATACAGGGCAAGAAAAATGCCATGGCTTTGAAATAC
GCAACCAGTATCAAGGTGATGTCGAAAGAAGAATTGAACCTTCTTTCTTC
TGAAGATCGAAAGAAGCCTTACGACTGTCAAAGTAAGTTTAAAGATCACA
GTTTCTGTCATAATACCAAagataatagacgatatcggcttaacgtgaaa
actcagatttgacccccgaaaatttcccaaaaagcattgtggggaattct
cggtggtcaaatctgagttttcatgtgaagCCGATATTGTCTATTGGCTG
TTTGGGCTCCCCTTTCATGTTTTTAAACAGTAGCGACAAGTAATAATACA
CGGTTTTTTTCGCTTATTTCTCTATAGTTTGCGGAAAGCGTTACAAGAAC
TCGNGAGGAATTTGGTAgcagaaagaagaaaaagaagggcGGCAAAGTGG
CTAAAGTAAGAAAAATAACACGCTATTGTAATGTTCTAACGCCCACTACA
AAGTATTTAGAGTAAAAGCAATTAGTTCTTCTTTTtaagtaaaatatttt
cttaaaggCATTAAAGTGCATAACGATGTTTTTAAAGAAGATGTTTTGAA
ATTGCATTCGTTCTCTATTATACTTACTATTCCTTGGTCTGTTTGTTCGT
CAACGGTTGAAGATAACATTTTAATTTGAAACCATGATTAATTCTCTTCA
CCCTGTTTTCAAATTCTTTAGCCTTTCTCGTCCTGTTCCTATTCTCACAT
CATTTTCCGTCGTAAGTTTTTCATTAGAGCCAGGGCAAACCAGTCTAACA
TTTCCTCCAACATGACTttccaatgttggatgaaatgcttgatggaaaaa
cttgcgttgGATGAAGCGAAAATCAAGGCTGGGGCGAActgatccaacat
ttcatccgacatgacttggaaaaaaattgaaaattcaaaaaataacgaaa
aaagtactaccaaaccaatccaacacgaaaaattacacaattcaatgaaa
gagcttctttgatctcgccgcaaatgttgaatgaaatgtttgatggcgaa
ttttcatttttttccaaaaatttgaattgccgcaaaccggtccaacattt
catccaacataaAAAAGGCATGTtagatgaaatgttggaccggtTTGCTC
CGGCCTTTACATCACAATTAATACAGCAAACCTTTCCCCTTATCTTGCCT
TGAATTCACCGACaaccattttttgaattttaaccaCAAAACAATCTTGA
AtttctcaaatgaaagaccctTTACTGCTTTACTGATCCTACCCATTAGT
GAGATAAAGCTCGCATAAAACGTTTTTATTTTAACGTTCACTATACAGGG
CAAGAAAAATGCTATGGCTTTGAAATACGCAACCAGTATCAAGGTGATGT
CGAAAGAAGAATTGAACCTTCTTTCTTCTGAAGATCGAAAGAAGCCTTAC
GACTGTCAAAGTAAGTTTAAGAGCAAAGTTACATACAGATCACTGTTTCT
GTCATAATACCAAagataatagacgatatcggcttaacgtgaaaactcag
atttgacccccgaaAATTGCCCACAATGGTTTGCGCGGAAAAAATTTCAC
GGTGAAATTATTTCCGCACagagcattgtggggaattctcgggggtcaaa
tctaAGTTTTCAGgtgaagccgatatcgtctattggctGTTTGGGCtcca
ttttcatgtttttaaacaGTAGCGACAAGTAATAATACACGGTTTTTTTC
GCTTATTTCTCTATAGTTTGCGGAAAGCGTTACAAGAACTCGCAAGGTTT
GCGGTATCACTATGAACATCACAATCACGATTTAGAAGAGCAGCAGCCCG
CCCCTCCACCTGCCCCACTCTCATCCCTTCCACCACCCATCGATCCGATC
CCTCCGCCTATGCCCGCCCTGACCGTTCAACCGGTCGAAGCACCACCTCC
CAATCATATTGCAGGAGCCAAACGGGCGAAAGGAACGCCACCAAGTCATT
TCTGTGACACCTGTCTGGGCAACGTGAATGCGAACAGACAAGGATCTGCG
GAAAGATTAATTTGTTGCGCAGACTGTGGNCCTGTCTGGGCAACGTGAAT
GCGAACAGACAAGGATCAGCGGAAAGATTAATTTGTTGCGCAGACTGTGG
CCGTTCAGGTAAGGGACGTTTTCTCTTCAAAATACTATAAAAAATGTGAA
ACAATGGTTATTACATTACACTAATATGGAATGAGTTTTGCTCAGTAAAT
AAATGTACTTTTTGCTGTCACATAGCTCATCCATCGTGTTTGACATTCAC
GGAGAAGATGACAGAGCAAGTGCAGAAATACCGATGGCAATGTATCGAAT
GTAAATCGTGCTGTTTGTGCGGCACCTCTGACAATGATGTAAGTAACCCT
TGCAATGAGAGTTCACAATGTTAATTCGTTCTACCACGCTGAAAATGTTG
ATCAAAATTATGTTTTCAAATCAAGATGGTTATGAATGGTGCGAATGACA
CAATATTCAGTTAGTAATAGACTTTGAGTcaaatttaaaagtttatttta
taCCCTGTGGCGGACACTTTGTTCCCACTGTTTCTTTTATGAAACCAGTT
TTTACTTGTGTGTTCTTTTTCAGGATCAGTTGTTGTTTTGCGATGATTGT
GATAGAGGCTACCATCTTTATTGTCTCAACCCTCCCATGGGTGAACCTCC
TGAAGGTATCAAAACCTCTTCTTTTTTAGTTAAGGTCAAGAaaaaaatga
gcgattgacaaCGATTGAATTGTTGTtcattttgatattatttttttgtc
gACGGTATTTTGAGATTTATTTATGATGTATTTTTCGGTTTAGGATTTGT
TTTATTTCTCGAGTTAATTTGATTGAATGCCCTGTTAAAATTCTAGAGAA
CTAACTTTTCTTTAAGATTGTTTGAAGTTTCTGTTGTCATACTTTTACCA
AcgtaaaaatcataatttttagGGAGCTCCGagccaaaatgaactttttt
tttaacgGAGGCTTGTGGTGGCACTGTCACGTCGAATCATTTTGGTATAA
TGTTCTTCTTCGCCACTCATCCTTGTTCTTCTTTTATTAGGCCACTGGCA
ATGTCAACTTTGCAACTCACGCATCCAAGGTTTGGATATTTCCCGTGTTG
CAGTCTTGCCGGAACACATGGATGCCGCCCTTCATGCCACGCCTTCCAAA
TGAACAAACAAGAAGACAGGTATCTtcatttggcccaaattttaggGTTG
TTCTTTTATCATGTTAGCGACGACATAATGACATCACAGCCTCTGTTCAA
TTCAGACACATGGAAAAGTTGCTCGTCTTTTCTTTGTTATGGCATTTGTG
AGACAAGATTTTGAATGGCCAACATAGGAAGCTCGTCGATAGTGAATAAT
GGCAgatatcaaaaaagtttcaatgattattttcaatgaaaacagTTAGT
AACACATTTACCTTGTTGCTAGAGACTTACCCGATGGGATATCTCTATTC
ATGGAAGATGAAACATTCAGCTGTTTTCACAGATCATACGAGCAGAAACA
TTACAGATATGTGTGATGGTGTttctattttatcttttttttatttatga
aacatttttaatggaataattttaaattacttGTGGTGTTTTTATATTTC
ACACTTTGAAATTGATGATTTGATATTAAGCTCCCTGATGGTTTGGGAAC
TTTTGTTTTGAGATACTGAGTCTTATTTTTCTAACGAAACAACATGATAC
CGTGCTTAGCTTAGACTATCAGTGCCTTTCAGTCATCCTTTCTTTCTTCC
TTCCTCCAAATATCTCCCTTATTGACGGTTGTCATGGATGGTTTCGTTGC
TACTTGTTGAACAAAATCTCGCAATTCTCGTATCAACCGAATGAAAACTT
TACTTTGGCGCTGTGCTTTATCTTTAAAAAACGTTTGATTTGTTTTAAAA
GGAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010752	XLOC_010752	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000320	supercontig	sc0000320:19402..25507 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.911381	1.96827e-08	0.000356167	1.4324	0.223326	0.0701472	0	3.41769e-06	0	0.431375	0.558789	1.19055e-09	0	0	0.866917	0.000526944	0	0	0	0	2.40372e-10	6.84203e-09	0	0.282177	0	0	3.57334e-06	4.09657	5.59297e-06	0.492975

Blast

[Close]

BLAST of TCONS_00019156 vs. Swiss-Prot (Human)
Match: DPF3 (Zinc finger protein DPF3 OS=Homo sapiens GN=DPF3 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.939e-42
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 2

Query: 1004 CLGNVNANRQ-GSAERLICCADCGRSAHPSCLTFTEKMTEQVQKYRWQCIECKSCCLCGTSDNDDQLLFCDDCDRGYHLYCLNPPMGEPPEGHWQCQLC 1297
            CLG  N N++ G  E L+ CADCGRS HP+CL FT  MTE V+ Y+WQCIECKSC LCGTS+NDDQLLFCDDCDRGYH+YCLNPP+ EPPEG W C LC
Sbjct:  265 CLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 363

HSP 2 Score: 82.0333 bits (201), Expect = 1.447e-16
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 3

Query:   84 FYKEAMDQVHLYNSKLLLDRRLRMPYIDSQTGLAQQDCHLWVSRVQRSSPIREGQVYSYPSRRWRVRKR 290
            FYKEA++    YNS+L  +R +R+P++DSQTG+AQ +C++W+ +  R   +  GQ+Y+YP+R WR ++R
Sbjct:   16 FYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRR 84

The following BLAST results are available for this feature:

BLAST of TCONS_00019156 vs. Swiss-Prot (Human)

BLAST of TCONS_00019156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPF3	2.939e-42	71.72	Zinc finger protein DPF3 OS=Homo sapiens GN=DPF3 P...	[more]

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TCONS_00019156 (transcript) - C. hemisphaerica