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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019248 ID=TCONS_00019248|Name=TCONS_00019248|organism=Clytia hemisphaerica|type=transcript|length=3909bp ATATTAACAACGAGAAAGACTTGAGcaatataaaaatgagaaaatctctA GTCTTTTCTGTCCTTGTACTGATCCTTTTACTTTATGTGGATTACATGGT TTGTCAAATGAGATTTCAACTTATACAAGATGGCAACGAAATAGCTGGGT TACAACCTTATCGCAAAGAAACGATGTCATCAAAGTCGAGATGCTATTTA ATGTGTCAACAGACTCCTGGTCAATGCTGTTATGTGCAATTGGTTCACCA ACAAGAAGATGGTCAATGGATATGTTCTTTGTATGAATTCGTTGGTGATA TCAACAAATATTTGTCACCTTCGCCAGGATCTGTAATCTCAGCACCAAAA GCCAACCCTCAAATGGATTGTTTAGATTGGCTTCGCCTTGGTTACACAAA AGATAGCGTCTACTACATCAATTTTAACGGTTACCGACGGAAAGTGTTTT GCGATATGACAACAGAGGGAGGTGGTTGGATTGTCATGCAGAAACGTTTT GATGGTTCGGAGGATTTTTATCGCGATTGGGTGACCTACAAAGAAGGCTT TGGGAATGTTGACGGTGAATATTGGTTGGGTAACGAATTCATTCATCAAT ACACCACTCGATTTTCAACAACATTGCGAGTTGACGCATCCGGATTTGAC GGTCAAACCAACTTCATCACATTGGATGGATTCTATCTTCAAGGGGAAGC TTCAAAATATAGAATCTATTTTACTGCTAACACTTGTCGCCAATCGTCAT CGCCTCACAATCTGTGTTACGCTTGGAATTTCNCAAAATATAGAATCTAT TTTACTGCTAACACTTGTCGCCAATCGTCATCGCCTCACAATCTATGTTA CGCTTGGAATTTTCATCGTGGTTTCAAATTTTCGACCAAAGACCAAGATA ATGATGATTTTTATGGATATTGTGCCAACTTCTACCAAACTGGGTGGTGG CTCGGCCAATGTACTGTTCTTGGCTTCAATGGGCCATATAGTGCAGATGG CGTTCTACAATATGGTAAAGTTGGGATCCATTGGATTGGCTGGTACCCTG ACACTTCTGCCTTGAAAGAAACGACCATGCTGAtcaggagagatccataa aaACCTTTTTCGAATATAGAGCAAAATTAGCTTCGATAGAGCATATTgag gaaaaagatttttttcttatttactGTGTTGCATTTTATTGCCTTGAGCA AAGAGGTGATAGATAAATAAATACATACATTAACTTTTATCTTTCATAAT ATCACAGAATGGTTACTTTTTCTTGCGTACAACAACGTTTACCCAAGGCC TTAAAATATTACGTAAGCCTACCTGAAAGCCTTATGTAAAAGTTAACGTA CATctgaaaaatactttgaaagTGGAATCTTTTGATATTGATGTACACTC ATGAGAATTTTACTAAAAAACAACTCAATAAGCAGTACTTTTCTAGGAGA GAATTATGTGCTAATATCATGATAACGAGGATCTGTTTGAATCCGTTGGG CATCGTAACTATTTTGCTGAgaaaaaacttattttaaacTTAGGCTAAGA TTACTATAGACATGAAAATACTGCCTCTATTAAAGGAGAGGAGCAAGCCT ATTTAAATTCTTGAGTATTTTTTACCAAAACCAGACTCAACCATAGACAG GCTGCAATTTTACTGTATGTAATTCTAATATTtgattttgtgttgttttt ttttccttctgcATAATTGTAAATTCTTAATTTCAATTCTGAATTGTAAA TATTATGTTATTAGGTTAAGATATTTACCTTTCGGTCTCTCAAATTCGAA CTTCAAAATATTCGACTCATCAAGTGAAATCTTAGGGGACCAATAttcta gttcgaattatagaaaattttgagtattaGAGGTTCGAAGTAGAGAGTAT TAACTGCACAAACCTTTTAGGGGCTCTATTTTCATCGACTAAGGGAGCTT GTCAAATAATAGAGCTTCGTTTATGAGAAATGACTGGGactttaaatttt atcgaataagggagcgtatggAGTAGTAGAAGGTCGAACTATATACATGA AAAAGCAAGATCAAAGTGCAGACTCTTTCAAAGGAAATCTTTTATTCCTA AAACAATAAACTAGCTAATATAGTGTAGGGTGCATTTGAAATACAAAGAG TGGAGTCTATCattattaacaaaaaataatctaaaagaAAAGGTCCTTGC TAATTCTGTAGTTTAAAGGACTTTTAATGGTTTCAGTTTTTCCATTGAAT TATATCTTGTTCAGACCTCCAATCAAAATTATTCCCGAATTTCCCATTAA AAAACGTATCTCAAAACTTGATTATGACTTTATTAGAGAGATTTATGATT TTACTTCCTTTTAAGTTCACTGACAGCTTCCGTCACGAACACCGCCCGGT TAAAGGCGGCACAAAAATGTCAATACGAATAAAAAAATAGCTTATGGGCG TTGATGgacatttgtttattttgtctCACTTAGCAGCGAGCTTGGATAAG TGAGTTCAAAGttcacttttcaaaacaatgggGACTTTTATGCcaccaaa agaattttttcaaggcCAAGTTTTCTCCAATGTTTCTTGATCAATCTGAA AACCAAACCCAAAGGCTTTAACACTGCCAATGTTCAAGACTAACGAAAAG TCTTCTATTTAGTAGACCGCATAAGAAAGGTTCTCAGGTCAGTAAAGTCT ATCAACACTGATTTCCATGTTGGAAATGATCTCCATGATCtccatcagcc attttgtctaagcacccccccccctgagggAGTTTTCACCCAACACATTC TATATTGTATAGTCTGttaaggcaaattttgatgtgAAAACATCAACAGT GTTTTTACGACTCTCTTCTTAGTagcatttttgtttgtttcaagCCAGTT GTTGCTGGGTTGTACCAATGTTGCCAATAAATTCCTTGTTTATTAGATGG TAAAACACCATCTGCACTGTATGACCCATTGAGGCCGATATCACCGCATG CTTCGAACCACCACCCCATTTTCATGGAGGTTGCACAGTGTTGTGTGCTG TGCGAGTCATTATCTTGATCCAATGTCGAGAATGTGTAACCATGTGAAAG ATACCAGGATCGGCATAAGTTGTGTGGTGATGTTGATTGATGACAAGTGT TCGCTTGAAAATAGATTCTATATTTTGAAGCTTCCCCTTGAAGATAGAAT CCATCCAATGTGATGAAGTTGGTTTGACCGTCAAATCCGGATGCATCAAC TCGCAATGTTGTTGAAAATCGATTGGTGTATTGATGAATGAATTCGTTGC CCAACCAATATTCACCGTCAACATTCCCAAAGCCTTCTTTGTAGGTCGCC CAATCGCGATAAAAATCCTCCGAACCATCAAAACGTTTCTGCATGACAAT CCAACCACCTCCCTCTGTTGTCATATCGCAAAACACTTTCCGTCGGTAAC CGTTAAAATTGATGTAGTAGACGCCATCTTTTGTGTAGCCAAGGCGAAGC CAATCTAAACAATCCATTTGAGGGTTGGCTTTTGGTGCTGAGATTACAGA TCCTGGCGAAGGTGACAAATGCTTGTTGATATCACCAACGAATTCATACA AAGAACATATCCATTGACCATCTTGTTGGTGAACCAATTGTACATAACAG CATTGACCAGGAGTCTGTTGACACATTAAATAGCATTTCGACTTTGATGA CATCGTTTCTTTGCGATAAGGTTGTAACCCAGCTATTTCGTTGCCATCTT GTATAAGTTGAAATCTCATTTGACAAACCATGTAATCCACATAAAGTAAA AGGATCGGTGCTAGGACAGAAAACACTagagattttctcattttttaagt TGTTGAGAATAGAACCTTTGAAAGCCTCAAATTTTCACTGCCTGTCCCTA CGTATAAAT Run BLAST on NCBI protein sequence of TCONS_00019248-protein >TCONS_00019248-protein ID=TCONS_00019248-protein|Name=TCONS_00019248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
INNEKDLSNIKMRKSLVFSVLVLILLLYVDYMVCQMRFQLIQDGNEIAGL QPYRKETMSSKSRCYLMCQQTPGQCCYVQLVHQQEDGQWICSLYEFVGDI NKYLSPSPGSVISAPKANPQMDCLDWLRLGYTKDSVYYINFNGYRRKVFC DMTTEGGGWIVMQKRFDGSEDFYRDWVTYKEGFGNVDGEYWLGNEFIHQY TTRFSTTLRVDASGFDGQTNFITLDGFYLQGEASKYRIYFTANTCRQSSS PHNLCYAWNFXKYRIYFTANTCRQSSSPHNLCYAWNFHRGFKFSTKDQDN DDFYGYCANFYQTGWWLGQCTVLGFNGPYSADGVLQYGKVGIHWIGWYPD TSALKETTMLIRRDP Run BLAST on NCBI transcript from alignment at sc0000321:45657..49565 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019248 ID=TCONS_00019248|Name=TCONS_00019248|organism=Clytia hemisphaerica|type=transcript|length=3909bp|location=Sequence derived from alignment at sc0000321:45657..49565 (Clytia hemisphaerica) ATTTATACGTAGGGACAGGCAGTGAAAATTTGAGGCTTTCAAAGGTTCTA
TTCTCAACAacttaaaaaatgagaaaatctctAGTGTTTTCTGTCCTAGC
ACCGATCCTTTTACTTTATGTGGATTACATGGTTTGTCAAATGAGATTTC
AACTTATACAAGATGGCAACGAAATAGCTGGGTTACAACCTTATCGCAAA
GAAACGATGTCATCAAAGTCGAAATGCTATTTAATGTGTCAACAGACTCC
TGGTCAATGCTGTTATGTACAATTGGTTCACCAACAAGATGGTCAATGGA
TATGTTCTTTGTATGAATTCGTTGGTGATATCAACAAGCATTTGTCACCT
TCGCCAGGATCTGTAATCTCAGCACCAAAAGCCAACCCTCAAATGGATTG
TTTAGATTGGCTTCGCCTTGGCTACACAAAAGATGGCGTCTACTACATCA
ATTTTAACGGTTACCGACGGAAAGTGTTTTGCGATATGACAACAGAGGGA
GGTGGTTGGATTGTCATGCAGAAACGTTTTGATGGTTCGGAGGATTTTTA
TCGCGATTGGGCGACCTACAAAGAAGGCTTTGGGAATGTTGACGGTGAAT
ATTGGTTGGGCAACGAATTCATTCATCAATACACCAATCGATTTTCAACA
ACATTGCGAGTTGATGCATCCGGATTTGACGGTCAAACCAACTTCATCAC
ATTGGATGGATTCTATCTTCAAGGGGAAGCTTCAAAATATAGAATCTATT
TTCAAGCGAACACTTGTCATCAATCAACATCACCACACAACTTATGCCGA
TCCTGGTATCTTTCACATGGTTACACATTCTCGACATTGGATCAAGATAA
TGACTCGCACAGCACACAACACTGTGCAACCTCCATGAAAATGGGGTGGT
GGTTCGAAGCATGCGGTGATATCGGCCTCAATGGGTCATACAGTGCAGAT
GGTGTTTTACCATCTAATAAACAAGGAATTTATTGGCAACATTGGTACAA
CCCAGCAACAACTGGcttgaaacaaacaaaaatgctACTAAGAAGAGAGT
CGTAAAAACACTGTTGATGTTTTcacatcaaaatttgccttaaCAGACTA
TACAATATAGAATGTGTTGGGTGAAAACTccctcaggggggggggtgctt
agacaaaatggctgatggaGATCATGGAGATCATTTCCAACATGGAAATC
AGTGTTGATAGACTTTACTGACCTGAGAACCTTTCTTATGCGGTCTACTA
AATAGAAGACTTTTCGTTAGTCTTGAACATTGGCAGTGTTAAAGCCTTTG
GGTTTGGTTTTCAGATTGATCAAGAAACATTGGAGAAAACTTGgccttga
aaaaattcttttggtgGCATAAAAGTCcccattgttttgaaaagtgaaCT
TTGAACTCACTTATCCAAGCTCGCTGCTAAGTGagacaaaataaacaaat
gtcCATCAACGCCCATAAGCTATTTTTTTATTCGTATTGACATTTTTGTG
CCGCCTTTAACCGGGCGGTGTTCGTGACGGAAGCTGTCAGTGAACTTAAA
AGGAAGTAAAATCATAAATCTCTCTAATAAAGTCATAATCAAGTTTTGAG
ATACGTTTTTTAATGGGAAATTCGGGAATAATTTTGATTGGAGGTCTGAA
CAAGATATAATTCAATGGAAAAACTGAAACCATTAAAAGTCCTTTAAACT
ACAGAATTAGCAAGGACCTTTtcttttagattattttttgttaataatGA
TAGACTCCACTCTTTGTATTTCAAATGCACCCTACACTATATTAGCTAGT
TTATTGTTTTAGGAATAAAAGATTTCCTTTGAAAGAGTCTGCACTTTGAT
CTTGCTTTTTCATGTATATAGTTCGACCTTCTACTACTccatacgctccc
ttattcgataaaatttaaagtCCCAGTCATTTCTCATAAACGAAGCTCTA
TTATTTGACAAGCTCCCTTAGTCGATGAAAATAGAGCCCCTAAAAGGTTT
GTGCAGTTAATACTCTCTACTTCGAACCTCtaatactcaaaattttctat
aattcgaactagaaTATTGGTCCCCTAAGATTTCACTTGATGAGTCGAAT
ATTTTGAAGTTCGAATTTGAGAGACCGAAAGGTAAATATCTTAACCTAAT
AACATAATATTTACAATTCAGAATTGAAATTAAGAATTTACAATTATgca
gaaggaaaaaaaaacaacacaaaatcaAATATTAGAATTACATACAGTAA
AATTGCAGCCTGTCTATGGTTGAGTCTGGTTTTGGTAAAAAATACTCAAG
AATTTAAATAGGCTTGCTCCTCTCCTTTAATAGAGGCAGTATTTTCATGT
CTATAGTAATCTTAGCCTAAgtttaaaataagttttttcTCAGCAAAATA
GTTACGATGCCCAACGGATTCAAACAGATCCTCGTTATCATGATATTAGC
ACATAATTCTCTCCTAGAAAAGTACTGCTTATTGAGTTGTTTTTTAGTAA
AATTCTCATGAGTGTACATCAATATCAAAAGATTCCActttcaaagtatt
tttcagATGTACGTTAACTTTTACATAAGGCTTTCAGGTAGGCTTACGTA
ATATTTTAAGGCCTTGGGTAAACGTTGTTGTACGCAAGAAAAAGTAACCA
TTCTGTGATATTATGAAAGATAAAAGTTAATGTATGTATTTATTTATCTA
TCACCTCTTTGCTCAAGGCAATAAAATGCAACACagtaaataagaaaaaa
atctttttcctcAATATGCTCTATCGAAGCTAATTTTGCTCTATATTCGA
AAAAGGTttttatggatctctcctgaTCAGCATGGTCGTTTCTTTCAAGG
CAGAAGTGTCAGGGTACCAGCCAATCCAATGGATCCCAACTTTACCATAT
TGTAGAACGCCATCTGCACTATATGGCCCATTGAAGCCAAGAACAGTACA
TTGGCCGAGCCACCACCCAGTTTGGTAGAAGTTGGCACAATATCCATAAA
AATCATCATTATCTTGGTCTTTGGTCGAAAATTTGAAACCACGATGAAAA
TTCCAAGCGTAACATAGATTGTGAGGCGATGACGATTGGCGACAAGTGTT
AGCAGTAAAATAGATTCTATATTTTGNGAAATTCCAAGCGTAACACAGAT
TGTGAGGCGATGACGATTGGCGACAAGTGTTAGCAGTAAAATAGATTCTA
TATTTTGAAGCTTCCCCTTGAAGATAGAATCCATCCAATGTGATGAAGTT
GGTTTGACCGTCAAATCCGGATGCGTCAACTCGCAATGTTGTTGAAAATC
GAGTGGTGTATTGATGAATGAATTCGTTACCCAACCAATATTCACCGTCA
ACATTCCCAAAGCCTTCTTTGTAGGTCACCCAATCGCGATAAAAATCCTC
CGAACCATCAAAACGTTTCTGCATGACAATCCAACCACCTCCCTCTGTTG
TCATATCGCAAAACACTTTCCGTCGGTAACCGTTAAAATTGATGTAGTAG
ACGCTATCTTTTGTGTAACCAAGGCGAAGCCAATCTAAACAATCCATTTG
AGGGTTGGCTTTTGGTGCTGAGATTACAGATCCTGGCGAAGGTGACAAAT
ATTTGTTGATATCACCAACGAATTCATACAAAGAACATATCCATTGACCA
TCTTCTTGTTGGTGAACCAATTGCACATAACAGCATTGACCAGGAGTCTG
TTGACACATTAAATAGCATCTCGACTTTGATGACATCGTTTCTTTGCGAT
AAGGTTGTAACCCAGCTATTTCGTTGCCATCTTGTATAAGTTGAAATCTC
ATTTGACAAACCATGTAATCCACATAAAGTAAAAGGATCAGTACAAGGAC
AGAAAAGACTagagattttctcatttttatattgCTCAAGTCTTTCTCGT
TGTTAATAT Coding sequence (CDS) from alignment at sc0000321:45657..49565 >TCONS_00019248 ID=TCONS_00019248|Name=TCONS_00019248|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000321:45657..49565 (Clytia hemisphaerica) ttatggatctctcctgaTCAGCATGGTCGTTTCTTTCAAGGCAGAAGTGT CAGGGTACCAGCCAATCCAATGGATCCCAACTTTACCATATTGTAGAACG CCATCTGCACTATATGGCCCATTGAAGCCAAGAACAGTACATTGGCCGAG CCACCACCCAGTTTGGTAGAAGTTGGCACAATATCCATAAAAATCATCAT TATCTTGGTCTTTGGTCGAAAATTTGAAACCACGATGAAAATTCCAAGCG TAACATAGATTGTGAGGCGATGACGATTGGCGACAAGTGTTAGCAGTAAA ATAGATTCTATATTTTGNGAAATTCCAAGCGTAACACAGATTGTGAGGCG ATGACGATTGGCGACAAGTGTTAGCAGTAAAATAGATTCTATATTTTGAA GCTTCCCCTTGAAGATAGAATCCATCCAATGTGATGAAGTTGGTTTGACC GTCAAATCCGGATGCGTCAACTCGCAATGTTGTTGAAAATCGAGTGGTGT ATTGATGAATGAATTCGTTACCCAACCAATATTCACCGTCAACATTCCCA AAGCCTTCTTTGTAGGTCACCCAATCGCGATAAAAATCCTCCGAACCATC AAAACGTTTCTGCATGACAATCCAACCACCTCCCTCTGTTGTCATATCGC AAAACACTTTCCGTCGGTAACCGTTAAAATTGATGTAGTAGACGCTATCT TTTGTGTAACCAAGGCGAAGCCAATCTAAACAATCCATTTGAGGGTTGGC TTTTGGTGCTGAGATTACAGATCCTGGCGAAGGTGACAAATATTTGTTGA TATCACCAACGAATTCATACAAAGAACATATCCATTGACCATCTTCTTGT TGGTGAACCAATTGCACATAACAGCATTGACCAGGAGTCTGTTGACACAT TAAATAGCATCTCGACTTTGATGACATCGTTTCTTTGCGATAAGGTTGTA ACCCAGCTATTTCGTTGCCATCTTGTATAAGTTGAAATCTCATTTGACAA ACCATGTAATCCACATAAAGTAAAAGGATCAGTACAAGGACAGAAAAGAC TagagattttctcatttttatattgCTCAAGTCTTTCTCGTTGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00019248-exon-sc0000321-1491911889:45657..49565 | TCONS_00019248-exon-sc0000321-1491911889:45657..49565 | Clytia hemisphaerica | exon |
TCONS_00019248-exon-sc0000321-1510915933:45657..49565 | TCONS_00019248-exon-sc0000321-1510915933:45657..49565 | Clytia hemisphaerica | exon |
TCONS_00019248-exon-sc0000321-1575043694:45657..49565 | TCONS_00019248-exon-sc0000321-1575043694:45657..49565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000321 | supercontig | sc0000321:45657..49565 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019248 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 9.068e-40 Identity = 88/224 (39.29%), Postives = 120/224 (53.57%), Query Frame = -3
Query: 2867 KANPQMDCLDWLRLGYTKDGVY--YINFNGYRRKVFCDMTTEGGGWIVMQKRFDGSEDFYRDWATYKEGFGNVDGEYWLGNEFIHQYTNRFSTTLRVDASGFDGQTNFITLDGFYLQGEASKYRIYFQANTCHQSTSPHNLCRSWYLSHGYTFSTLDQDNDSHSTQHCATSMKMGWWFEACGDIGLNGSYSADGVLPSNKQGIYWQHWYNPATTGLKQTKMLLR 3532
+ P DC D + G+ K G+Y YIN +KVFC+M GGGW V+Q R DGS DF R W YK GFGN GEYWLGNEFI T++ LR++ ++G + D F++ E YR+Y + +T +S + HG FST D DND+ + CA + GWWF+ACG LNG + G GI W H++ + L+ T M++R
Sbjct: 279 EEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTGTAGK------QSSLILHGADFSTKDADNDNCMCK-CALMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKW-HYFKGPSYSLRSTTMMIR 494 HSP 2 Score: 136.732 bits (343), Expect = 2.242e-33 Identity = 88/250 (35.20%), Postives = 116/250 (46.40%), Query Frame = 3
Query: 348 KANPQMDCLDWLRLGYTKDSVY--YINFNGYRRKVFCDMTTEGGGWIVMQKRFDGSEDFYRDWVTYKEGFGNVDGEYWLGNEFIHQYTTRFSTTLRVDASGFDGQTNFITLDGFYLQGEASKYRIYFTANTCRQSSSPHNLCYAWNFXKYRIYFTANTCRQSSSPHNLCYAWNFHRGFKFSTKDQDNDDFYGYCANFYQTGWWLGQCTVLGFNGPYSADGVLQYGKV-GIHWIGWYPDTSALKETTMLIR 1088
+ P DC D + G+ K +Y YIN +KVFC+M GGGW V+Q R DGS DF R W YK GFGN GEYWLGNEFI T++ LR++ ++G + D F++ E YR+Y +T +QSS G FSTKD DND+ CA GWW C NG + G +GK+ GI W + + +L+ TTM+IR
Sbjct: 279 EEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHT------------------------GTAGKQSSL---------ILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQ-NHGKLNGIKWHYFKGPSYSLRSTTMMIR 494
The following BLAST results are available for this feature:
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