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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019303 ID=TCONS_00019303|Name=TCONS_00019303|organism=Clytia hemisphaerica|type=transcript|length=1438bp
AAGCATTCAATCCACTACTCACCGACGGTCTATACAagttaaattttaaa
aagggtTGCTCAATTGAATATCGCTGTCATTAAACAACTTCAAGATAGCA
TTGTCAATTGCGCTTGACACTAATTTACGAGACGTTACATCGATGTCACA
CACATTTTCATCCACCATCGCAGGAGGGGAGAACGATTCAACAGATTGTA
CCGTAAGCGGAAATTCCGGGAAGTCCGACTGGATAGCCGGAATTGTTTTT
GGGGAAACAAGGGGTGCGCTAGAATTCAGCGGCGGAAGTTTACACTTCAG
TGGGTTTCCGTTAGCCTTTTCCGTATCGATCTTGATACCGCTATCTGTAT
GTTCGTTCGGTTGATGGGGTAGAACACCAGTTGCAAGGTTAAGAACTTCA
AATAATCCTTCAAAGCCACTGTTTTCATCTTTCACATCTACAGATTGAGA
TTCTGGCAGATCGAGGGCGGAATCTACCATTTCCTCAACATGGGAAATGT
TCTTTTGATCTTGCTTTCTTCCAATGGATGCTACGAAGCGACTGTCTATG
ACAGCGGCGGGAGTTGTTGGTGGCAAACTAGTGTTAATACGgtcttcatt
ggatttttcaatGTTCTGAgcttgtttcttcttctttggCTTCAAGGGGA
TCGAGGTCTTCAACAGTGGAAGCTGGGAACCACTCACTGTTTGAATTTGT
GGCAATGGAGCTAAAGATTGATTAATGTCTGGTAGACTTGATTCTGGTAG
ATTGAGGGCGGGATCCACCATTTTGTCAACGTGGGAAGTATTATTTTTAA
CTTCCTTTCTCCCGATCGATGCCACAAATCGATTATCTATGACAGCAGTT
GGAGTTGTTGGAAGTGGACTGTGGACATCTTGGTTTGATTCCTCGACTTG
CTCTTTTTTCTTCACCTTCTTTGGTTTTAGGGGGACGGAAGTCTTAGTTA
GCGGGAGTTGAGACCCGTTCATCATTTGAATTTGTGGCAATGGAGTCAAA
GGTTGATTAACGCTTGGTGGGCTTGCGAGTGCGATTGGCTTTAACCTTTT
CGGCTTCTTTACTATCGGGACACACGACTTCATGACAGGCATCTGCGACC
CTTCGTTTGTATGCGTTAATGTGTAAATTTTTGAAGAGTCGCCATCGAGG
GTATTGTTATCGGATATCGGGGACGCTGTCACAGGATCGTCTAACGTTTC
GGCTGTTTCAGAACCGGGGTAGTCTTCTTTCGTATCATCATTTTCTTTGT
CCTCCTGCTTCAACAGATTATTCTTAGAGCTGTTAAGGTTGCCGGGTCCA
GAAAAGTCTTCAGTGGAGCTTGGTGAAACGGTTAACAAGTCCTCATTAGA
AGGCAAAAAGGCGGGTTGTGCATTCTCGGAAAGGATGTGATTCGGTTTGA
CAGGTCCAGGTTCATGTGCTGGGTTCAGTGGTGAATCG Run BLAST on NCBI protein sequence of TCONS_00019303-protein >TCONS_00019303-protein ID=TCONS_00019303-protein|Name=TCONS_00019303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
DSPLNPAHEPGPVKPNHILSENAQPAFLPSNEDLLTVSPSSTEDFSGPGN
LNSSKNNLLKQEDKENDDTKEDYPGSETAETLDDPVTASPISDNNTLDGD
SSKIYTLTHTNEGSQMPVMKSCVPIVKKPKRLKPIALASPPSVNQPLTPL
PQIQMMNGSQLPLTKTSVPLKPKKVKKKEQVEESNQDVHSPLPTTPTAVI
DNRFVASIGRKEVKNNTSHVDKMVDPALNLPESSLPDINQSLAPLPQIQT
VSGSQLPLLKTSIPLKPKKKKQAQNIEKSNEDRINTSLPPTTPAAVIDSR
FVASIGRKQDQKNISHVEEMVDSALDLPESQSVDVKDENSGFEGLFEVLN
LATGVLPHQPNEHTDSGIKIDTEKANGNPLKCKLPPLNSSAPLVSPKTIP
AIQSDFPEFPLTVQSVESFSPPAMVDENVCDIDVTSRKLVSSAIDNAILK
LFNDSDIQLSNPF Run BLAST on NCBI transcript from alignment at sc0000323:241244..242681 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019303 ID=TCONS_00019303|Name=TCONS_00019303|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at sc0000323:241244..242681 (Clytia hemisphaerica)
CGATTCACCACTGAACCCAGCACATGAACCTGGACCTGTCAAACCGAATC
ACATCCTTTCCGAGAATGCACAACCCGCCTTTTTGCCTTCTAATGAGGAC
TTGTTAACCGTTTCACCAAGCTCCACTGAAGACTTTTCTGGACCCGGCAA
CCTTAACAGCTCTAAGAATAATCTGTTGAAGCAGGAGGACAAAGAAAATG
ATGATACGAAAGAAGACTACCCCGGTTCTGAAACAGCCGAAACGTTAGAC
GATCCTGTGACAGCGTCCCCGATATCCGATAACAATACCCTCGATGGCGA
CTCTTCAAAAATTTACACATTAACGCATACAAACGAAGGGTCGCAGATGC
CTGTCATGAAGTCGTGTGTCCCGATAGTAAAGAAGCCGAAAAGGTTAAAG
CCAATCGCACTCGCAAGCCCACCAAGCGTTAATCAACCTTTGACTCCATT
GCCACAAATTCAAATGATGAACGGGTCTCAACTCCCGCTAACTAAGACTT
CCGTCCCCCTAAAACCAAAGAAGGTGAAGAAAAAAGAGCAAGTCGAGGAA
TCAAACCAAGATGTCCACAGTCCACTTCCAACAACTCCAACTGCTGTCAT
AGATAATCGATTTGTGGCATCGATCGGGAGAAAGGAAGTTAAAAATAATA
CTTCCCACGTTGACAAAATGGTGGATCCCGCCCTCAATCTACCAGAATCA
AGTCTACCAGACATTAATCAATCTTTAGCTCCATTGCCACAAATTCAAAC
AGTGAGTGGTTCCCAGCTTCCACTGTTGAAGACCTCGATCCCCTTGAAGc
caaagaagaagaaacaagcTCAGAACattgaaaaatccaatgaagacCGT
ATTAACACTAGTTTGCCACCAACAACTCCCGCCGCTGTCATAGACAGTCG
CTTCGTAGCATCCATTGGAAGAAAGCAAGATCAAAAGAACATTTCCCATG
TTGAGGAAATGGTAGATTCCGCCCTCGATCTGCCAGAATCTCAATCTGTA
GATGTGAAAGATGAAAACAGTGGCTTTGAAGGATTATTTGAAGTTCTTAA
CCTTGCAACTGGTGTTCTACCCCATCAACCGAACGAACATACAGATAGCG
GTATCAAGATCGATACGGAAAAGGCTAACGGAAACCCACTGAAGTGTAAA
CTTCCGCCGCTGAATTCTAGCGCACCCCTTGTTTCCCCAAAAACAATTCC
GGCTATCCAGTCGGACTTCCCGGAATTTCCGCTTACGGTACAATCTGTTG
AATCGTTCTCCCCTCCTGCGATGGTGGATGAAAATGTGTGTGACATCGAT
GTAACGTCTCGTAAATTAGTGTCAAGCGCAATTGACAATGCTATCTTGAA
GTTGTTTAATGACAGCGATATTCAATTGAGCAaccctttttaaaatttaa
ctTGTATAGACCGTCGGTGAGTAGTGGATTGAATGCTT Coding sequence (CDS) from alignment at sc0000323:241244..242681 >TCONS_00019303 ID=TCONS_00019303|Name=TCONS_00019303|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000323:241244..242681 (Clytia hemisphaerica)
GATTCACCACTGAACCCAGCACATGAACCTGGACCTGTCAAACCGAATCA
CATCCTTTCCGAGAATGCACAACCCGCCTTTTTGCCTTCTAATGAGGACT
TGTTAACCGTTTCACCAAGCTCCACTGAAGACTTTTCTGGACCCGGCAAC
CTTAACAGCTCTAAGAATAATCTGTTGAAGCAGGAGGACAAAGAAAATGA
TGATACGAAAGAAGACTACCCCGGTTCTGAAACAGCCGAAACGTTAGACG
ATCCTGTGACAGCGTCCCCGATATCCGATAACAATACCCTCGATGGCGAC
TCTTCAAAAATTTACACATTAACGCATACAAACGAAGGGTCGCAGATGCC
TGTCATGAAGTCGTGTGTCCCGATAGTAAAGAAGCCGAAAAGGTTAAAGC
CAATCGCACTCGCAAGCCCACCAAGCGTTAATCAACCTTTGACTCCATTG
CCACAAATTCAAATGATGAACGGGTCTCAACTCCCGCTAACTAAGACTTC
CGTCCCCCTAAAACCAAAGAAGGTGAAGAAAAAAGAGCAAGTCGAGGAAT
CAAACCAAGATGTCCACAGTCCACTTCCAACAACTCCAACTGCTGTCATA
GATAATCGATTTGTGGCATCGATCGGGAGAAAGGAAGTTAAAAATAATAC
TTCCCACGTTGACAAAATGGTGGATCCCGCCCTCAATCTACCAGAATCAA
GTCTACCAGACATTAATCAATCTTTAGCTCCATTGCCACAAATTCAAACA
GTGAGTGGTTCCCAGCTTCCACTGTTGAAGACCTCGATCCCCTTGAAGcc
aaagaagaagaaacaagcTCAGAACattgaaaaatccaatgaagacCGTA
TTAACACTAGTTTGCCACCAACAACTCCCGCCGCTGTCATAGACAGTCGC
TTCGTAGCATCCATTGGAAGAAAGCAAGATCAAAAGAACATTTCCCATGT
TGAGGAAATGGTAGATTCCGCCCTCGATCTGCCAGAATCTCAATCTGTAG
ATGTGAAAGATGAAAACAGTGGCTTTGAAGGATTATTTGAAGTTCTTAAC
CTTGCAACTGGTGTTCTACCCCATCAACCGAACGAACATACAGATAGCGG
TATCAAGATCGATACGGAAAAGGCTAACGGAAACCCACTGAAGTGTAAAC
TTCCGCCGCTGAATTCTAGCGCACCCCTTGTTTCCCCAAAAACAATTCCG
GCTATCCAGTCGGACTTCCCGGAATTTCCGCTTACGGTACAATCTGTTGA
ATCGTTCTCCCCTCCTGCGATGGTGGATGAAAATGTGTGTGACATCGATG
TAACGTCTCGTAAATTAGTGTCAAGCGCAATTGACAATGCTATCTTGAAG
TTGTTTAATGACAGCGATATTCAATTGAGCAaccctttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019303-exon-sc0000323-1491911889:241244..242681 | TCONS_00019303-exon-sc0000323-1491911889:241244..242681 | Clytia hemisphaerica | exon |
| TCONS_00019303-exon-sc0000323-1510915933:241244..242681 | TCONS_00019303-exon-sc0000323-1510915933:241244..242681 | Clytia hemisphaerica | exon |
| TCONS_00019303-exon-sc0000323-1575043694:241244..242681 | TCONS_00019303-exon-sc0000323-1575043694:241244..242681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000323 | supercontig | sc0000323:241244..242681 . |
Blast
The following BLAST results are available for this feature:
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