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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019402 ID=TCONS_00019402|Name=TCONS_00019402|organism=Clytia hemisphaerica|type=transcript|length=2549bpRun BLAST on NCBI protein sequence of TCONS_00019402-protein >TCONS_00019402-protein ID=TCONS_00019402-protein|Name=TCONS_00019402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp TNTMGLRISMLILTLLLYIEVSIATGGSSHNKTKIFRQLLQKGYNKHVLPRun BLAST on NCBI transcript from alignment at sc0000326:85398..98572- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019402 ID=TCONS_00019402|Name=TCONS_00019402|organism=Clytia hemisphaerica|type=transcript|length=13175bp|location=Sequence derived from alignment at sc0000326:85398..98572- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000326:85398..98572- >TCONS_00019402 ID=TCONS_00019402|Name=TCONS_00019402|organism=Clytia hemisphaerica|type=CDS|length=17259bp|location=Sequence derived from alignment at sc0000326:85398..98572- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019402 vs. Swiss-Prot (Human)
Match: GBRR3 (Gamma-aminobutyric acid receptor subunit rho-3 OS=Homo sapiens GN=GABRR3 PE=3 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 2.534e-41 Identity = 128/479 (26.72%), Postives = 215/479 (44.89%), Query Frame = 3
Query: 60 EVSIATGGSSHNKTKIFRQLLQKGYNKHVL-PSEHGEPVKVEVNMVIHDFVPRSPLSANSYSMDFLYRSRWKDHRLAFKHLLEPGDDFVLEFGIQSVVDKIWVPGISFDNQIMNIETKVPQANIRMQFFSDGGIRLSQRHQVELACKMDTGDFPFDRQFCDMRMLSYAYDKDHVDLQWEKSNSTHFQTVFGPQNTNMIRMRMKSYSLKSTVRTSMLGKDHHVLIATWKFSRNVNYYILQLYLPCMLIVVLSWVGFWIDYRSVPARTALGIVTVLSMITFTNTVHAESPPNGKSTLVNWYVLVSFIFVFLGIVEFAIVGITDKIWKQRIQRTIKESSNVSQHRKNNHGLSPRSRRQSAYSQTPCESDHVDDLNVIFKRQLQQTDSTARVNDLQPQMNRRNPRSNGMFLAPTGVALQELTKVHEYTQKWKAKAGLKEKVHARLYEKQKFGKDDAHVLDQLARVIFPVCFVLFNIIY-GVAV 1490
E + S+ + + + QLL N + P G PV V +++ + S + + ++M F R WKD RL+F F + KIWVP I F + + NI ++ DG + LS R V C MD FP D Q C + + SYAY++D + L W+ N +++ ++ ++ + ++ +S S + ++ L + R+V +++LQ Y P +L+V+LSWV FWID R+VPAR +LGI TVL+M T V A P V+ Y+ VS +FVFL ++E+A V + ++R Q K++ +S+ + A + C D D++ QT + D + + +P ++ + + K + L V + E HV+D +R++FP+ ++LFN+ Y GV V
Sbjct: 45 ETRMKKDDSTKARPQKYEQLLHIEDNDFAMRPGFGGSPVPVGIDVHVESIDSISETNMD-FTMTFYLRHYWKDERLSFPSTANKSMTFD-----HRLTRKIWVPDIFFVHSKRSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMCFMDFSRFPLDTQNCSLELESYAYNEDDLMLYWKHGN----KSLNTEEHMSLSQFFIEDFSASSGLAFYSSTGWYNRLFINFVLRRHVFFFVLQTYFPAILMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITAVSASMPQVSYLKAVDVYLWVSSLFVFLSVIEYAAVNYLTTV-EERKQ--FKKTGKISRMYNID--------AVQAMAFDGCYHDSEIDMD--------QTSLSLNSEDFMRRKSICSPSTD--------------------SSRIKRRKSLGGHVGRIILENN-------HVIDTYSRILFPIVYILFNLFYWGVYV 467 The following BLAST results are available for this feature:
BLAST of TCONS_00019402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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