TCONS_00019406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019406
Unique NameTCONS_00019406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019406 ID=TCONS_00019406|Name=TCONS_00019406|organism=Clytia hemisphaerica|type=transcript|length=253bp
AAACACCATGGGATTGAGGATTTCGATGCTCATATTGACGCTTTTGCTTT
ACATCGAGGTTTCTATAGCAACCGGAGGATCGTCACACAACAAAACCAAA
ATATTTCGACAACTTTtgcaaaaagGTTATAACAAGCATGTGCTACCATC
AGAGCATGGGGAACCAGTCAAGGTTGAAGTCAACATGGTCATTCATGATT
TTGTACCCAGGTCTCCTCTCAGCGCAAATTCCTACAGCATGGATTTTCTT
TAT
Run BLAST on NCBI

transcript from alignment at sc0000326:96432..98568-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019406 ID=TCONS_00019406|Name=TCONS_00019406|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at sc0000326:96432..98568- (Clytia hemisphaerica)
AAACACCATGGGATTGAGGATTTCGATGCTCATATTGACGCTTTTGCTTT
ACATCGAGGTTTCTATAGCAACCGGAGGATCGTCACACAACAAAACCAAA
ATATTTCGACAACTTTTGCAAAAAGGTAAAAATCTTTTTTTATGAGAACA
ATCTTGTAATGTCACGAAACTTAATTTGGGCAAAACCTAAGAATGAATTA
AGAACAATCTCAACCTCTGATTTTAGAAATACAGTGTATTCTCTGTAACT
CGAACATGCACGGGGAAACACAAATCTGTTCGAATTATGGAAATTTCGAG
CTAAAATGGAGTAAGGTTTATAGGGCATTGACAATTGAAGGGACCACAAA
AATGATTCGTATTAAAGAGCTTTGGGTTTAAGAGACTCCGCTGTAACTAA
GAACATGCTGGATTCTTAGTTTTTGACGGAACGATGTCGATGAAAAGAAT
CGTAGCCTTCTGGTACTCAGCTGACAAACAACGTTGTTTCAACGTTCATC
TAACGTTATATGGATGTTGTGAACGTTAGATAAACGTTGAAACAAACGTT
GTGTGCCAGCTGGGTGGATTTTATGTGAAACCCAAACGTTTATTTTCTGT
TTAGATTTTAAATACCCTTATGCAAAAAACTTTCTTGCCTTATGTGACAG
TTCCACTGGGACCCGGTGGAAAGAATACCCCCCAATTTTAGCCCAAATGA
AAATTTCCATTCCCGTTCGGTTCACTTGATGGTTTATCAAAATTGTAACA
AAAGAATTTATATCCCCATTGACTGGATTTCGATAGAAATTGTTGTCTTC
GCTGTGGGAAAATGTTCCACCGGGGCTATGAGACAGTAGTGTATTAAAAT
ATGTCACTTTAACTCCTTCAGGGCAACGAAAGTCAAAAAAATAGATTTTT
TTCGTTTTATAGAAGTTCCAACTTCAGATGCAATTATCNATCAAAAAAAT
CGATTTTTTTCGTTTTTAGAAGTTCTGCTGTTCGGCAAGCCTCTCCACCA
ATACGGTTTTACTGACCCTGTATATCCCGTATCCCACCTCGAGAAGACCG
TGTAACTAATAGTATCCTTCTGGTACTCAGCTGACAAACAACGTTGTTTC
GTCTTTCATCTAACGTTATATGGATGTTGTGAACGTTAGATATACGTTGA
AACAACGTTGTGTGCCAGCTGGGTGGGCCCTGCCCCGTGTGAATTTTATG
AGAAACCCAAACGTTTATTTTCTGTTTAGATTTAGATTAAATACCCTCGC
AGATCTACTGGGACCCGGTAGGAAAACTACCCCTCAATTTTAGCCCAAAT
GAAAATTTCCATTCCCGTTCGGTTCACTTGATGTTTTATTAAAATTGTAA
CAAAACAATTTATATCCCCATTGACTGGATTTCGATTGAAATTTTTGTCT
TCGCTGTGGGAAAATGTTCCACCGGGGCTATGAGACAGTAGTGTATTAAA
ATATGTCACTTTGACTCCTTCAGGGCAACGAAAATCAAAAAAATAGATTT
TTTTCGTTTTTAGAAGTTCCAACTTCGGATGCAATCAGCTTTGGTGCAAT
CTTAATAGGTCATGTTTGGGTTCGTTGGAAAGATCTTTTCAGTGTGCCAG
ATTTTTAAATCAGGTCCTCACAAAAAGTTATGGCAGCCGTAAAGTATCGT
TCAAAATAGAAAGAAATTTGCTGGGGCCGTCCTGAAAGAGTTAAAAACAT
ATTTATCTGATTTTTAAGGTTATAACAAGCATGTGCTACCATCAGAGCAT
GGGGAACCAGTCAAGGTTGAAGTCAACATGGTCATTCATGATTTTGTACC
CAGGTCTCCTCTCAGCGCAGTATGTATTCACTCTATTATTCTTAAACGAC
GGCATATGCCACCAAAAAAATCGCTTTCAAAATCCGACCCTTACAGTGCA
GCCCTTGAGCAGTGAAATGGCACCCTCTTATACATTTTACTCAGCATTTC
TGGCCCTTACAGCGTTGTATTAACTATTTCTTTTTTCATTCATAGCTCAT
TTCTCCATTTTCACCAAAATTCAGGATTTGAACTTAGTTCTGAATCATCT
CTTTATCGGTCAAGATCGAAATATCACCAGTTACTTTTTTAGTTCTTGCT
CTTTCATTAGAATTCCTACAGCATGGATTTTCTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010901XLOC_010901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019406-exon-sc0000326-1575043694:98444..98568TCONS_00019406-exon-sc0000326-1575043694:98444..98568Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1575043694:96750..96850TCONS_00019406-exon-sc0000326-1575043694:96750..96850Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1575043694:96432..96458TCONS_00019406-exon-sc0000326-1575043694:96432..96458Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1510915933:98444..98568TCONS_00019406-exon-sc0000326-1510915933:98444..98568Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1510915933:96750..96850TCONS_00019406-exon-sc0000326-1510915933:96750..96850Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1510915933:96432..96458TCONS_00019406-exon-sc0000326-1510915933:96432..96458Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1491911889:98444..98568TCONS_00019406-exon-sc0000326-1491911889:98444..98568Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1491911889:96750..96850TCONS_00019406-exon-sc0000326-1491911889:96750..96850Clytia hemisphaericaexon
TCONS_00019406-exon-sc0000326-1491911889:96432..96458TCONS_00019406-exon-sc0000326-1491911889:96432..96458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:96432..98568 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.06986	0	0	1.89227	0	0	0	0	0.590662	0	0	1.27673	3.72123	0	0	0	0	1.09248	5.06679	0	0	0	0	0	0	0	0	0	0.541355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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