TCONS_00019417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019417
Unique NameTCONS_00019417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019417 ID=TCONS_00019417|Name=TCONS_00019417|organism=Clytia hemisphaerica|type=transcript|length=511bp
CAAATGTAGTTCAAAGGATTGCACCTTCATACACTTTTTCCAAACAACAG
AGTTTGAAATGATTCGACTTGGTTTCATTGCTGGTTGTGTATTGGCGATT
CTCAGTGTCCTTGTGGCCCTGATTCAAGCCTTTGTACAGAGAACCCTGAC
ATTCCCAATAGTTACTTTGCAGATATGTTCAGTCTTGTTATGCATTGGTT
GCTTATCATACTTCACATATCtttcacgtgaccgaaaaatgaATATGAGA
ACACAATGGAGTTATATCATTGGTTGGATTGGTGCAGGCGTTGTAATGAT
GTCATTATTAATATTATTGGTTATATCAAATCGTAAAAAATCGAGTCCCA
CTCTTTATTAGATAGTTTGTTTTATTGTTAGTTTATTATTGTCTTAGAAG
AATCGCACCACCCGTACAGTACAGCAAAAAATTAGTGAAATCCCATAACC
TTtacagtttttttttctaattttcaactcttttagagccaaaaaaaagt
caaaattttcg
Run BLAST on NCBI

protein sequence of TCONS_00019417-protein

>TCONS_00019417-protein ID=TCONS_00019417-protein|Name=TCONS_00019417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
KCSSKDCTFIHFFQTTEFEMIRLGFIAGCVLAILSVLVALIQAFVQRTLT
FPIVTLQICSVLLCIGCLSYFTYLSRDRKMNMRTQWSYIIGWIGAGVVMM
SLLILLVISNRKKSSPTLY
Run BLAST on NCBI

transcript from alignment at sc0000326:190389..195120-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019417 ID=TCONS_00019417|Name=TCONS_00019417|organism=Clytia hemisphaerica|type=transcript|length=4732bp|location=Sequence derived from alignment at sc0000326:190389..195120- (Clytia hemisphaerica)
CAAATGTAGTTCAAAGGATTGCACCTTCATACACTTTTTCCAAACAACAG
GTGAGACTTAAACTTCAATAAATACAGTAGATATAAAGATTACTTTTCTT
TCACCCTAAACTAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGT
TATATGGACGTTGTGAACGTTAGATAAGCGTCGAAAAAACGTTGTGTGCC
AACTGGGAAGGTAGCTAATTCGAAAAAAATCTAAGGTTCTTGGAGGTCTA
GTCTGTGGTCCGGTCCGTGGAGGATGTCAACTATTATTTTAGGTCTCTTT
ATAAGCCATTTGGTGGTTAAGCCTTGAAAAGACTTCTTCTCATTCATGAG
AAAACTTTCCTAATGTCACTTGATTGGAGGTTATGAGACTAAGCTGTGTT
ACTTTAAAATATATGATTTTCGAAATAATGATCATATCGTTGTTAACCCT
TTAAGTGCCGATGTCGTATATATACGACATGGGCTATATAGGAGGGCGAA
GCCCTCCTGTAATGCCCAGTTTGAGTTAGAAATCGTTATTTTTGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCAACGAGCTATATACGAGCTTCTAATTCCTTCTAGAT
CAGGAGATATAAGCCCTTAAAGTTTGAACTAGCGATTTTTTTAAAAAAAC
TTAGAAAAAAGGACCCTGGCACTTAAAGGGTTAAAGAAAAATTGCAAAAA
GAATTTTTTTTTTTAGATTTCTCAATTTTTGGCCTAAACTCACTCAAAAA
TGCTGAAAAACACCAAAAAATCACATTTTCAAAATTTTTTTTTCACTTTG
TTTAATAATAAGTGATAAAACTCATTCCACTTAGGTTCTAACAACTATGA
AATAGATCCCTGTCTCGCCAAAAAAGAACGACTCTTTATCATTGATAGAG
ACAACCATGGCTTAAAAATGAAACCCTGTCTCGAGTAAAAGACAGTTCTG
TATCACTGGGAAAAAAAACATGTCTTGGAGATATAACCCTGTCTCACTGA
AAGGACAACTCTGTTTCACTGAAAGGACAACATTGTCTCACTGAACGGAC
AACTTTGTCTCACTGAAAGGACAATTTTGTCTCACTGAAAGAACAACTCT
GTTTCACTGAAAAGACAGCTCTGCCTCACTGAAAGGACAAATCTGTCTCA
CTGAAAGGACAACTTTGTCTCACTGAAAGGACAACTCTGTTTCACTGAAA
AGACAGCTCTGTTTCACTGAAAGGACAAGTTTCACTAAAAGGACAAGTCT
CACTGAAAGGACAGCTCTGTCCCACTGAAAAGACAACTCATCTCACTAGG
GCAACTCTGTCTCACTGAAAAGAAAACTCTATCCCACTGAAAAGACAGCT
CTGTCTCACTGAAAGGACAAGTCTCACTGAAAGGACAAGTCCCCGGGGGG
GGGGGGGGGGTCTTGGGGAAAGGGGGGTGCGGGTTTGGGGGGAGCCATAA
GGGTCCCTTTTCTCATTCCTCAAAAGTCTCTCAAAGGGGTACAAATTCAA
AAGTAAGTCTCTGAAAGGGTCCCAAAATCACGAAAATCAAAAATTTCTCT
CACAAAGGCTCACGATTTCCAAAAATTTTGACCAAAATTAGGTGACAATC
AAACCAAAATTTGGAAAAAATGAACCAAAATTTAGGAAAAGTCTCTCAAA
GGGGTACAAATTCAAAAGTAAGTCTCTGAAAGGGTCCCAAAATCACCAAA
ATTTTGTCTCTCAAAGGGTCGATTTTCGATTTTCGGCTCGGACATACCCG
TCACCTCGCAAACCTAGTACCCCCCCCCCGGGGACAAGTCTCACTGAAAA
GACAACTCTGTCTCACTGAAAGGACAACTCTGTCCCACTGAAAGGAAAAG
TCTCACTGAAAGGACAACTCGTCTCACTAGGGCAACTCTGTCTCACTGAA
AAGAAAACTCTACAACTCGACTCACTAGGACAACTCTGTTTCACTGAAAA
GACAGCTCTGTCTCAATGAATGGACAAGTTTCACTAAAAGGACAAGTCTC
ACTGAAAGGACAACTCTGTCTCACTGAAATGACAACTTTGTCTCACTGAA
AGGACAACTCTGTTTCACTGAAAGGACAACTCTGTTTCACTGAAAAGACA
GCTCTGTCTCACTGAAAGGACACTCTTCCCCATCCAAGAGACTGCCCTGT
CTCATTGTCATAAAAACAAGCCTGTCTCACTGAACGTTAAGCATGTCTCA
AAAAACAACCCTGTTTCTTTGGAGAGATAACCCTGACTCATAAAAAAACC
TTCTTTTATCTATATAACTGAAGATACGACCCTGTGTTATGAAGAAGACA
ATCCTCTCCCACTAAATCAACAGTGATCTATCAAAAATGTAAAAATTAGG
CCCTAGGAAATCCAAAGTAAGTATCAACCTGTTAAGCTATCCCAGAGGAG
GGGGTACTCTCGGGTACCTAATAGCGGCCCCCCCCGCTAATTAATTTTTC
GAAAATTTTCCGCCCAGGACATTCGTATTCCAACCCCCCCGCTTATAAAA
TTTTGAGATTTTTTCCAACCCCCCTGCTTATTCCAATCCCCACGGCTATT
AGGTACCCGAGAGTACTTAGGATGCAAGCTCACAAGTACTGCTCTAATTT
AGACCCTCGGACCCTTACCAGGACTAAAATTGTTTTCAATTCACTAACTA
TTTTTGATTTTACAGAGTTTGAAATGATTCGACTTGGTTTCATTGCTGGT
TGTGTATTGGCGATTCTCAGTGTCCTTGTGGCCCTGATTCAAGCCTTTGT
ACAGAGAACCCTGACATTCCCAATAGTTACTTTGCAGATATGTTCAGGTA
AGTGTTATCTCAGCTGGCAAACAACGTTGTTTCAACGCTAATCTAACGTT
AAATGGACGTTGTAAACATTAGATTAACGTTGAAACAACGTTCTGTGCCA
GCTGGGATGTTGAGCGGTGAAAAAGAAAGTGGATATTATATTTTGATTCT
TCCCGACATGTTTCGGGCTCGGTCCGTTCTCTCAAGGGAATGATATTTCT
ATAGAAAAAAAAAGTGTTTTTATACAAAAATTATTTGACGTCGATTTGGA
CAAATACGTCACTTTAGGCGATTTCGGCTTGAAAATAGATTGGTGTAAAT
GGGGCCATCTGATAAGTTGAATTTGGTCTGAAATGAATGTGTAGATCAGA
CTTAATTAGTGTTATATTATCAACGAACCAGAGGCCACAGCACCACTTAT
AAGTGATAGCCATGACATAGTGACTAAGTAGGCGCCGCCATGAATGGCGG
CGATGGCCGAAATTTTTTAATTTTAACCCTTCTAGACAGGTCTTTTTAAA
GGTTTTTAACAGCATTGCTTTGAAAAAATGTGGTCAGGTCAGGGCCCAAC
AGGCCCCTCGCTCCTGCGGGGCCTGCAAACTCAGAGTTTGCTGATGATCA
GCATCTTCTAACATTACATTACGGACCCAACAGGTGATTGGTTTCAAGTG
ACATATCGACTAATTTTAAGTCACTTACAACCAATCAGCTTTTGGGCCCG
TGATGTAATGTCAGAAGACATTGTAGTGAAGAATATCGCATGGACGATCT
GAACTAGTTCGAGTGCTGTTGGCCTCGATGTTGGCCTTTTTATTAGTTTA
GCCTCAGAATTTTAACCATCTTCAACGTGTTCACCGTATCGAAAACTGTC
AAAAAAGTTTTGTCAAGCCGAACATTAGCGGTCTCTTGATCGCCAAAAAC
GAAATCAAAAAGGGCCTAAATTTAATTAATTTTCATAATTATTGTTTTTC
CAGTCTTGTTATGCATTGGTTGCTTATCATACTTCACATATCTTTCACGT
GACCGAAAAATGAATATGAGAACACAATGGAGTTATATCATTGGTTGGAT
TGGTGCAGGCGTTGTAATGATGTCATTATTAATATTATTGGTTATATCAA
ATCGTAAAAAATCGAGTCCCACTCTTTATTAGATAGTTTGTTTTATTGTT
AGTTTATTATTGTCTTAGAAGAATCGCACCACCCGTACAGTACAGCAAAA
AATTAGTGAAATCCCATAACCTTTACAGTTTTTTTTTCTAATTTTCAACT
CTTTTAGAGCCAAAAAAAAGTCAAAATTTTCG

Coding sequence (CDS) from alignment at sc0000326:190389..195120-

>TCONS_00019417 ID=TCONS_00019417|Name=TCONS_00019417|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000326:190389..195120- (Clytia hemisphaerica)
TCTTGTTATGCATTGGTTGCTTATCATACTTCACATATCTTTCACGTGAC
CGAAAAATGAATATGAGAACACAATGGAGTTATATCATTGGTTGGATTGG
TGCAGGCGTTGTAATGATGTCATTATTAATATTATTGGTTATATCAAATC
GTAAAAAATCGAGTCCCACTCTTTATTAGAGTTTGAAATGATTCGACTTG
GTTTCATTGCTGGTTGTGTATTGGCGATTCTCAGTGTCCTTGTGGCCCTG
ATTCAAGCCTTTGTACAGAGAACCCTGACATTCCCAATAGTTACTTTGCA
GATATGTTCAGAAATGTAGTTCAAAGGATTGCACCTTCATACACTTTTTC
CAAACAACAGTCTTGTTATGCATTGGTTGCTTATCATACTTCACATATCT
TTCACGTGACCGAAAAATGAATATGAGAACACAATGGAGTTATATCATTG
GTTGGATTGGTGCAGGCGTTGTAATGATGTCATTATTAATATTATTGGTT
ATATCAAATCGTAAAAAATCGAGTCCCACTCTTTATTAGAGTTTGAAATG
ATTCGACTTGGTTTCATTGCTGGTTGTGTATTGGCGATTCTCAGTGTCCT
TGTGGCCCTGATTCAAGCCTTTGTACAGAGAACCCTGACATTCCCAATAG
TTACTTTGCAGATATGTTCAGAAATGTAGTTCAAAGGATTGCACCTTCAT
ACACTTTTTCCAAACAACAGTCTTGTTATGCATTGGTTGCTTATCATACT
TCACATATCTTTCACGTGACCGAAAAATGAATATGAGAACACAATGGAGT
TATATCATTGGTTGGATTGGTGCAGGCGTTGTAATGATGTCATTATTAAT
ATTATTGGTTATATCAAATCGTAAAAAATCGAGTCCCACTCTTTATTAGA
GTTTGAAATGATTCGACTTGGTTTCATTGCTGGTTGTGTATTGGCGATTC
TCAGTGTCCTTGTGGCCCTGATTCAAGCCTTTGTACAGAGAACCCTGACA
TTCCCAATAGTTACTTTGCAGATATGTTCAGAAATGTAGTTCAAAGGATT
GCACCTTCATACACTTTTTCCAAACAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010905XLOC_010905Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019417-proteinTCONS_00019417-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019417-exon-sc0000326-1575043694:195071..195120TCONS_00019417-exon-sc0000326-1575043694:195071..195120Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1575043694:191674..191805TCONS_00019417-exon-sc0000326-1575043694:191674..191805Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1575043694:190389..190717TCONS_00019417-exon-sc0000326-1575043694:190389..190717Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1510915933:195071..195120TCONS_00019417-exon-sc0000326-1510915933:195071..195120Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1510915933:191674..191805TCONS_00019417-exon-sc0000326-1510915933:191674..191805Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1510915933:190389..190717TCONS_00019417-exon-sc0000326-1510915933:190389..190717Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1491911889:195071..195120TCONS_00019417-exon-sc0000326-1491911889:195071..195120Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1491911889:191674..191805TCONS_00019417-exon-sc0000326-1491911889:191674..191805Clytia hemisphaericaexon
TCONS_00019417-exon-sc0000326-1491911889:190389..190717TCONS_00019417-exon-sc0000326-1491911889:190389..190717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:190389..195120 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.125188	0	0	0.197989	0.245242	0.119019	0	2.03137	1.46049	1.13401	1.5749	2.11653	3.52524	4.62054	3.39761	8.17794	4.15511	2.55922	2.44916	2.01806	3.15187	0	0.343824	1.56467	2.39123
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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