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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019469 ID=TCONS_00019469|Name=TCONS_00019469|organism=Clytia hemisphaerica|type=transcript|length=4772bpRun BLAST on NCBI protein sequence of TCONS_00019469-protein >TCONS_00019469-protein ID=TCONS_00019469-protein|Name=TCONS_00019469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1127bp MNIYQRLFSRTSIQFFVLLLSCELICRCTHAKLYARSLNNANNLYSGNNKRun BLAST on NCBI transcript from alignment at sc0000328:260918..288974+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019469 ID=TCONS_00019469|Name=TCONS_00019469|organism=Clytia hemisphaerica|type=transcript|length=28057bp|location=Sequence derived from alignment at sc0000328:260918..288974+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000328:260918..288974+ >TCONS_00019469 ID=TCONS_00019469|Name=TCONS_00019469|organism=Clytia hemisphaerica|type=CDS|length=64296bp|location=Sequence derived from alignment at sc0000328:260918..288974+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019469 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 521.161 bits (1341), Expect = 3.182e-161 Identity = 304/733 (41.47%), Postives = 439/733 (59.89%), Query Frame = 2
Query: 1277 NKTKAAGGDPYNATQLMKNVFSANFRGKTGQVVL-KKGDRTPILEVRNF--QSGKPVHICTFGLQENDECTNSKGKVDIVWPGGVKTAPLDRPKCGFNGELCKQDEDQENTXXXXXXXXXXXXXXXXXXXVVFVYKRRKYEKDLLGKGFIVNYDEIVNQGTYXXXXXXHAQQNGKVMGGSISSKSPSFRHKYRSMSRLP-----DTYSVQSDTESMMERSQFIVSYRGQHVMIKKLNKTTSNVNRENLLEFKQIREIHHXXXXXXXXXXXXXXXXXILTQYCSKGSLQDVLQNSDIRLDWMFKMSFATDIASGAYELHRNGII-HGRLHSNNCVIDNRWVCKITDYGMDKFKQTHHNNNQEDETEYQKYRKLLWQAPELLKSTSSDDKDGKTKEGDIYSFGIILSEILTREDPYY--DYEMEPKDIIKNVRARHEPPFRPKVN-EADCEDNRYCALMKSCWTDCPSQRPNFENVKGRLKRMSGGRTGNLMDNMIEMMGRYTDNLEDLVEERTQQLAAEKAKTDELLYKMLPKTIAEQLKMGEQVTAETFESVTIFFSDIVGFTSLAGASTPMQVVDLLNDLYTCFDKCIDNYDVYKVETIGDAYMVVSGLPQRNGFKHAGEIATMSLDLLHHTKTFRIRHLPEKFLQLRIGIHSGSCVAGVVGLKMPRYCLFGDTVNYASRMESSGLALRVHISPECKELLDQLGGYQLIDRGPTNMKGKGTINTYFLGGKQG 3439
+T A GG + + + +++ +F+G TG + + GDR + + ++G + + + S K++ WP G P D PKCGF+ E ++D +TL + + L ++ + F+Y++ + EK+L + + V ++++ S RH + SRL Y TE + Y+G V +K++N+ + R+ L E K +R++ + ++ + VG C PN+CILT+YC +GSLQD+L+N I LDWMF+ S DI G LH I HG L S+NCV+D R+V KITDYG++ F+ + + E + Y K LW APELL+ S + ++ GD+YSFGIIL EI R ++ ++ PK+II+ V +PPFRP + ++ E+ LM+ CW + P +RP F+ ++ L++ + + N++DN++ M +Y +NLE+LVEERTQ EK K + LLY++LP ++AEQLK GE V AE F+SVTI+FSDIVGFT+L+ STPMQVV LLNDLYTCFD IDN+DVYKVETIGDAYMVVSGLP RNG HA E+A M+L LL ++FRIRH P++ L+LRIGIH+G AGVVGLKMPRYCLFGDTVN ASRMES+G AL++H+S E K +L++ GG++L RG MKGKG + TY+L G++G
Sbjct: 365 TETLAHGGTVTDGENITQRMWNRSFQGVTGYLKIDSSGDRETDFSLWDMDPENGAFRVVLNYNGTSQELVAVSGRKLN--WPLGYP--PPDIPKCGFDNEDPACNQDHLSTLEVLALVGSLSLLGILIVSF-FIYRKMQLEKELASELWRVRWEDV--------------------------EPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFR------DLDPEQGHTVYAKKLWTAPELLRMASPPVRG--SQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSLALQSHLEE--LGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELELRGDVEMKGKGKVRTYWLLGERG 1056 The following BLAST results are available for this feature:
BLAST of TCONS_00019469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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