|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019473 ID=TCONS_00019473|Name=TCONS_00019473|organism=Clytia hemisphaerica|type=transcript|length=2888bpRun BLAST on NCBI transcript from alignment at sc0000328:263433..280058+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019473 ID=TCONS_00019473|Name=TCONS_00019473|organism=Clytia hemisphaerica|type=transcript|length=16626bp|location=Sequence derived from alignment at sc0000328:263433..280058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019473 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 1.056e-94 Identity = 247/811 (30.46%), Postives = 409/811 (50.43%), Query Frame = 3
Query: 534 AYIGPYCSEGCVSGGLLAAFLEKPMISYSCSKDTLSNKTIYPTFARTKTFVRSYPKILSRKLVALMKKHGWSLITLVV-----STESGWHTFAQGVFTELMQHNIQVADKLTYNKNK-NDYEHVLNLAKDKARIFALLGYHPETAKLLVKAREMGMFNGENVFITMDFEVES-----------NWEKQDWLGGYTVDEAFNGFLDMSVESPESLGDGTYKKFQERVREKMAEDPFDYQMKPDEKVHIDXXXXXXXXXXXXXXXNKTKAAGGDPYNATQLMKNVFSANFRGKTGQVVL-KKGDRTPILEVRNF--QSGKPVHICTFGLQENDECTNSKGKVDIVWPGGVKTAPLDRPKCGFNGELCKQDEDQENTXXXXXXXXXXXXXXXXXXXVVFVYKRRKYEKDLLGKGFIVNYDEIVNQGT--YXXXXXXHAQQNGKIDAYSMTSCADSIYYERMNTASYGGQHVMIKKLNKTTSNVNRENLLEFKQIREIHHXXXXXXXXXXXXXXXXXILTQYCSKGSLQDVLQNSDIRLDWMFKMSFATDIASGAYELHRNGII-HGRLHSNNCVIDNRWVCKITDYGMDKFKQTHHNNNQEDETEYQKYRKLLWQAPELLKSTSSDDKDGKTKEGDIYSFGIILSEILTREDPYY--DYEMEPKDIIKNVRARHEPPFRPKVN-EADCEDNRYCALMKSCWTDCPSQRPNFENVKGRLKRMSGGRTGNLMDNMIEMMGRYTDNLEDLVEERTQQLAAEKAKTDELLYKMLPKTIAEQLKMGEQVTAETFESVTIFFSDIVGFTSLAGASTPMQV 2888
++GP C G A P+++ K Y R SY K L + AL ++ GW L++ E +G+F + D L + ++ + Y +L K R+ + L++ A E G+ + VF +D +S WE+ D + +AF ++ + P+ + Y +F ++++ +A + F++ M+ D V+ A +D + LY A +T A GG + + + +++ +F+G TG + + GDR + + ++G + + + S K++ WP G P D PKCGF+ E ++D +TL + + L ++ + F+Y++ + EK+L + + V ++++ + G +G+ Y + + TA Y G V +K++N+ + R+ L E K +R++ + ++ + VG C PN+CILT+YC +GSLQD+L+N I LDWMF+ S DI G LH I HG L S+NCV+D R+V KITDYG++ F+ + + E + Y K LW APELL+ S + ++ GD+YSFGIIL EI R ++ ++ PK+II+ V +PPFRP + ++ E+ LM+ CW + P +RP F+ ++ L++ + + N++DN++ M +Y +NLE+LVEERTQ EK K + LLY++LP ++AEQLK GE V AE F+SVTI+FSDIVGFT+L+ STPMQV
Sbjct: 112 VFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPALGFGVKDEYALTTRAGP---SYAK-LGDFVAALHRRLGWERQALMLYAYRPGDEEHCFFLVEGLFMRVRDRLNITVDHLEFAEDDLSHYTRLLRTMPRKGRVIYICSSPDAFRTLMLLALEAGLCGEDYVFFHLDIFGQSLQGGQGPAPRRPWERGDG-QDVSARQAFQAAKIITYKDPD---NPEYLEFLKQLKH-LAYEQFNFTME-DGLVNTIPASFHDGLLLYIQAVTETLAHGGTVTDGENITQRMWNRSFQGVTGYLKIDSSGDRETDFSLWDMDPENGAFRVVLNYNGTSQELVAVSGRKLN--WPLGYP--PPDIPKCGFDNEDPACNQDHLSTLEVLALVGSLSLLGILIVSF-FIYRKMQLEKELASELWRVRWEDVEPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFR------DLDPEQGHTVYAKKLWTAPELLRMASPPVRG--SQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSLALQSHLEE--LGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQV 897 The following BLAST results are available for this feature:
BLAST of TCONS_00019473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.