TCONS_00019500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019500
Unique NameTCONS_00019500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019500 ID=TCONS_00019500|Name=TCONS_00019500|organism=Clytia hemisphaerica|type=transcript|length=762bp
gtccacaaaagtatcacttgtttatttgACATTATTAGAATCATTATGAT
TTACCAAAGATTGAAGTAATCTAAATAAAAACACACAATCAAGCCAAAAA
CCATTTACACGTCTTCACAACTATACATCTTTCTCTATTTGACAATGTTA
CACCAATACCTCATGATTTACCATGGATCGAAGTAATCTTTTTACCTTAT
CATACCAATACCTCATGATTTACCAGAGATTGAAATAATCTAAATTTAAC
AACAAGCAACCTAACAAGAACCATTTAGtcgaaacattttttcattcgat
attattttaattttaccCATAACTCTCATGATTTGCCAAAATATTACAGT
ATTCTAAATAACACCAAGCAATCAAGCCAGAAACCATTTACACAACAACA
CATCTATATCATTCTTCATTTGACATTATTACGCGAATACCTCATGATTT
GCCAGAAATTGAAGTTTGATATGAATAACAACAAGCAATCAAACCAAAAA
CCATTTACACAACAACACATCTATATCATTCTTCATTTGACACTATTATA
CGAATACCTCATGATTTGCCAGAAATTGAAGTTTGATATGAATAACACCA
AGCAATCAAGCCAGAAACCATTTACACAACATCACATCTATATCATTCTT
CATTTGACATTATTACGCGAATACCTCATGATTTGCCAGAAATTGAAGTT
TGATATGAATAACACCAAGCAATCAAGCCAGAAACCATTTCCACAACAAA
ACATCTATATCA
Run BLAST on NCBI

protein sequence of TCONS_00019500-protein

>TCONS_00019500-protein ID=TCONS_00019500-protein|Name=TCONS_00019500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MICQKLKFDMNNNKQSNQKPFTQQHIYIILHLTLLYEYLMICQKLKFDMN
NTKQSSQKPFTQHHIYIILHLTLLREYLMICQKLKFDMNNTKQSSQKPFP
QQNIYI
Run BLAST on NCBI

transcript from alignment at sc0000328:223873..224634

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019500 ID=TCONS_00019500|Name=TCONS_00019500|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0000328:223873..224634 (Clytia hemisphaerica)
TGATATAGATGTTTTGTTGTGGAAATGGTTTCTGGCTTGATTGCTTGGTG
TTATTCATATCAAACTTCAATTTCTGGCAAATCATGAGGTATTCGCGTAA
TAATGTCAAATGAAGAATGATATAGATGTGATGTTGTGTAAATGGTTTCT
GGCTTGATTGCTTGGTGTTATTCATATCAAACTTCAATTTCTGGCAAATC
ATGAGGTATTCGTATAATAGTGTCAAATGAAGAATGATATAGATGTGTTG
TTGTGTAAATGGTTTTTGGTTTGATTGCTTGTTGTTATTCATATCAAACT
TCAATTTCTGGCAAATCATGAGGTATTCGCGTAATAATGTCAAATGAAGA
ATGATATAGATGTGTTGTTGTGTAAATGGTTTCTGGCTTGATTGCTTGGT
GTTATTTAGAATACTGTAATATTTTGGCAAATCATGAGAGTTATGggtaa
aattaaaataatatcgaatgaaaaaatgtttcgaCTAAATGGTTCTTGTT
AGGTTGCTTGTTGTTAAATTTAGATTATTTCAATCTCTGGTAAATCATGA
GGTATTGGTATGATAAGGTAAAAAGATTACTTCGATCCATGGTAAATCAT
GAGGTATTGGTGTAACATTGTCAAATAGAGAAAGATGTATAGTTGTGAAG
ACGTGTAAATGGTTTTTGGCTTGATTGTGTGTTTTTATTTAGATTACTTC
AATCTTTGGTAAATCATAATGATTCTAATAATGTcaaataaacaagtgat
acttttgtggac

Coding sequence (CDS) from alignment at sc0000328:223873..224634

>TCONS_00019500 ID=TCONS_00019500|Name=TCONS_00019500|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000328:223873..224634 (Clytia hemisphaerica)
GATATAGATGTTTTGTTGTGGAAATGGTTTCTGGCTTGATTGCTTGGTGT
TATTCATATCAAACTTCAATTTCTGGCAAATCATGAGGTATTCGCGTAAT
AATGTCAAATGAAGAATGATATAGATGTGATGTTGTGTAAATGGTTTCTG
GCTTGATTGCTTGGTGTTATTCATATCAAACTTCAATTTCTGGCAAATCA
TGAGGTATTCGTATAATAGTGTCAAATGAAGAATGATATAGATGTGTTGT
TGTGTAAATGGTTTTTGGTTTGATTGCTTGTTGTTATTCATATCAAACTT
CAATTTCTGGCAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010960XLOC_010960Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019500-proteinTCONS_00019500-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019500-exon-sc0000328-1491911889:223873..224634TCONS_00019500-exon-sc0000328-1491911889:223873..224634Clytia hemisphaericaexon
TCONS_00019500-exon-sc0000328-1510915933:223873..224634TCONS_00019500-exon-sc0000328-1510915933:223873..224634Clytia hemisphaericaexon
TCONS_00019500-exon-sc0000328-1575043694:223873..224634TCONS_00019500-exon-sc0000328-1575043694:223873..224634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:223873..224634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.50898	1.0255	2.227	2.08489	0.378436	0.401789	0.194993	0.170908	0.0426675	0	0.0728587	0.0390943	0	0	0	0.142729	0.248115	0.0907663	0	0	0	0.184422	0.0879693	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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