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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019538 ID=TCONS_00019538|Name=TCONS_00019538|organism=Clytia hemisphaerica|type=transcript|length=833bp
CTcccattaaaataattttctttgttcCGGCATATTTCATCTTCGAAATC
AGAAATATTATCATGCAAGGATGTTTCAGTAATTATCTCCTTACGAAATG
TGATTATCTCATCATGGTATAAAAAGGGTGTTTCTTCGGGAAGAAAATCA
TCAAACTCAGACAACAACACTAACAAGCAAATATAACATTCTGAAGAACA
ACCAACCAATCCGAAAATGAAGACCTTTATTGCTCTTGCTCTTATTGCTG
ctgCTTCAGCCATTACCAACCCACCCATCACTGGAACAACACCACCAGCT
ATTGAATGTCCAAATTCATTATGTAACGGAAGATATGATGGTAACTTTGC
TCTTGATTACTACACAAACTACTTTGTCCAATGTGTTGGTGGATTAGCTT
ACTGTCAAGCTTGCTTCCCTCTCTCTTTGGAATTCAGTCAAACTTGCAAC
CAATGTTTGTACAGCAAACACGACGACTGTGTCACCACACAAAAATGGCA
CCCAGCCACCACCTTTTCTTGCCCAGACAAATGCCCCCATTACGGACCAG
ACTTCAGTGGAAACATTGAAGACCCAGATCAACCACGTCAATACGTTGCT
TGCTGGAAGGGAGTCACTGTCGGATGTGTTGCTTGTCCAGGAAACTTGAA
ATTCAACCAAAAAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCG
AACCATCCCActaataatttaattttaattttattttattatttgttaaa
caaattttctacttaaaatgaaaaaaatttaagttatttactaaattttg
gaaaaacattTTAGTCAACACCCTTTTCTATAT Run BLAST on NCBI protein sequence of TCONS_00019538-protein >TCONS_00019538-protein ID=TCONS_00019538-protein|Name=TCONS_00019538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MKTFIALALIAAASAITNPPITGTTPPAIECPNSLCNGRYDGNFALDYYT
NYFVQCVGGLAYCQACFPLSLEFSQTCNQCLYSKHDDCVTTQKWHPATTF
SCPDKCPHYGPDFSGNIEDPDQPRQYVACWKGVTVGCVACPGNLKFNQKE
NACLYEGKYLTEPSH Run BLAST on NCBI transcript from alignment at sc0000329:306371..307485- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019538 ID=TCONS_00019538|Name=TCONS_00019538|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at sc0000329:306371..307485- (Clytia hemisphaerica)
CTCCCATTAAAATAATTTTCTTTGTTCCGGCATATTTCATCTTCGAAATC
AGAAATATTATCATGCAAGGATGTTTCAGTAATTATCTCCTTACGAAATG
TGATTATCTCATCATGGTATAAAAAGGGTGTTTCTTCGGGAAGAAAATCA
TCAAACTCAGACAACAACACTAACAAGCAAATATAACATTCTGAAGAACA
ACCAACCAATCCGAAAATGAAGACCTTTATTGCTCTTGCTCTTATTGCTG
GTAAGTTTCCTTTACATTCAGTCGACGCTCTCTATAATTCGATTTTCAAT
AGAAATTAAATTGTTTCATCGAATAAGGGAGAGTATCGAATTCATAATAG
GCATCACTACAGTTTTCTGACATTACACTATAGACCGCCAAAAGCTCATT
TGTTGCAAGTGACATATTGACGGTTTTTTTTATAAGAGTTTCTCGTTGAC
GGTGGCTTTCAATATTATCGAATAAACGGAGTGCATACCAAGGCACCGGG
TAATAACCATTAGTTTTATTTTATTTTTTCAGCTGCTTCAGCCATTACCA
ACCCACCCATCACTGGAACAACACCACCAGCTATTGAATGTCCAAATTCA
TTATGTAACGGAAGATATGATGGTAACTTTGCTCTTGATTACTACACAAA
CTACTTTGTCCAATGTGTTGGTGGATTAGCTTACTGTCAAGCTTGCTTCC
CTCTCTCTTTGGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCAAA
CACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCACCACCTTTTC
TTGCCCAGACAAATGCCCCCATTACGGACCAGACTTCAGTGGAAACATTG
AAGACCCAGATCAACCACGTCAATACGTTGCTTGCTGGAAGGGAGTCACT
GTCGGATGTGTTGCTTGTCCAGGAAACTTGAAATTCAACCAAAAAGAAAA
CGCTTGCTTGTACGAAGGCAAATACCTCACCGAACCATCCCACTAATAAT
TTAATTTTAATTTTATTTTATTATTTGTTAAACAAATTTTCTACTTAAAA
TGAAAAAAATTTAAGTTATTTACTAAATTTTGGAAAAACATTTTAGTCAA
CACCCTTTTCTATAT Coding sequence (CDS) from alignment at sc0000329:306371..307485- >TCONS_00019538 ID=TCONS_00019538|Name=TCONS_00019538|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000329:306371..307485- (Clytia hemisphaerica)
CTGCTTCAGCCATTACCAACCCACCCATCACTGGAACAACACCACCAGCT
ATTGAATGTCCAAATTCATTATGTAACGGAAGATATGATGGTAACTTTGC
TCTTGATTACTACACAAACTACTTTGTCCAATGTGTTGGTGGATTAGCTT
ACTGTCAAGCTTGCTTCCCTCTCTCTTTGGAATTCAGTCAAACTTGCAAC
CAATGTTTGTACAGCAAACACGACGACTGTGTCACCACACAAAAATGGCA
CCCAGCCACCACCTTTTCTTGCCCAGACAAATGCCCCCATTACGGACCAG
ACTTCAGTGGAAACATTGAAGACCCAGATCAACCACGTCAATACGTTGCT
TGCTGGAAGGGAGTCACTGTCGGATGTGTTGCTTGTCCAGGAAACTTGAA
ATTCAACCAAAAAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCG
AACCATCCCACTAAATGAAGACCTTTATTGCTCTTGCTCTTATTGCTGCT
GCTTCAGCCATTACCAACCCACCCATCACTGGAACAACACCACCAGCTAT
TGAATGTCCAAATTCATTATGTAACGGAAGATATGATGGTAACTTTGCTC
TTGATTACTACACAAACTACTTTGTCCAATGTGTTGGTGGATTAGCTTAC
TGTCAAGCTTGCTTCCCTCTCTCTTTGGAATTCAGTCAAACTTGCAACCA
ATGTTTGTACAGCAAACACGACGACTGTGTCACCACACAAAAATGGCACC
CAGCCACCACCTTTTCTTGCCCAGACAAATGCCCCCATTACGGACCAGAC
TTCAGTGGAAACATTGAAGACCCAGATCAACCACGTCAATACGTTGCTTG
CTGGAAGGGAGTCACTGTCGGATGTGTTGCTTGTCCAGGAAACTTGAAAT
TCAACCAAAAAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCGAA
CCATCCCACTAAATGAAGACCTTTATTGCTCTTGCTCTTATTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019538-exon-sc0000329-1575043694:307236..307485 | TCONS_00019538-exon-sc0000329-1575043694:307236..307485 | Clytia hemisphaerica | exon |
| TCONS_00019538-exon-sc0000329-1575043694:306371..306953 | TCONS_00019538-exon-sc0000329-1575043694:306371..306953 | Clytia hemisphaerica | exon |
| TCONS_00019538-exon-sc0000329-1510915933:307236..307485 | TCONS_00019538-exon-sc0000329-1510915933:307236..307485 | Clytia hemisphaerica | exon |
| TCONS_00019538-exon-sc0000329-1510915933:306371..306953 | TCONS_00019538-exon-sc0000329-1510915933:306371..306953 | Clytia hemisphaerica | exon |
| TCONS_00019538-exon-sc0000329-1491911889:307236..307485 | TCONS_00019538-exon-sc0000329-1491911889:307236..307485 | Clytia hemisphaerica | exon |
| TCONS_00019538-exon-sc0000329-1491911889:306371..306953 | TCONS_00019538-exon-sc0000329-1491911889:306371..306953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000329 | supercontig | sc0000329:306371..307485 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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