|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019582 ID=TCONS_00019582|Name=TCONS_00019582|organism=Clytia hemisphaerica|type=transcript|length=2982bpRun BLAST on NCBI protein sequence of TCONS_00019582-protein >TCONS_00019582-protein ID=TCONS_00019582-protein|Name=TCONS_00019582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp KYNTIQINMLRSFSQNMIISNLNKMKASHRHISCLPILRAKLDISPLKKARun BLAST on NCBI transcript from alignment at sc0000331:209130..228589- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019582 ID=TCONS_00019582|Name=TCONS_00019582|organism=Clytia hemisphaerica|type=transcript|length=19460bp|location=Sequence derived from alignment at sc0000331:209130..228589- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000331:209130..228589- >TCONS_00019582 ID=TCONS_00019582|Name=TCONS_00019582|organism=Clytia hemisphaerica|type=CDS|length=27339bp|location=Sequence derived from alignment at sc0000331:209130..228589- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019582 vs. Swiss-Prot (Human)
Match: P5CS (Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2) HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0 Identity = 342/643 (53.19%), Postives = 463/643 (72.01%), Query Frame = 1
Query: 136 PLKKASMPMF--RDQLKNCNRIVVKMGSAVITREDETGVALGRLAAIVEQVSELQNVGKEMMIITSGAVAFGRQTLRNELSMQQTMRDSLKFNTRRMG-----FIDSRACAAVGQGGLLSLYEEMFNQYGLTVAQVLLTKPDLQNNGSRANLRATMEELIRMNCVPIINANDAVVPPLGPEVDLAGMTPWTKSTLALKDNDSLAALLAVEMNADLLVILSDVDGIYTAPPKEEHSRLLSIFRPSDKNLVRFGASDSKVGTGGMESKVNASLYALEGGTSVVIANGQFKEI--NTVNDIVNGKKIGTFFTYAERDIVPIEDQAVRARAGSKALANLTPNERXXXXXXXXXXXXXNHHEILTANQKDMEAARRDGTMAASLISRLALTPQKLNVLTEGLRQIAESSKNILGRPIRATRVGDGLDLHQITVPIGVLLVIFESRPDCLPQVAALSIASGNGLLLKGGKEAKHSNEFLQTLVEKALSLHGVNCSGAITLVDSKDEVSDLLRMKEHIDLVIPRGSSEMIANIKEQSKDIPVLGHAEGICHVFVDRDADMETAVRVVIDSKCNYPAACNAMETLLVDKTLFGTTAFDELLQALKNNNVKAHAGPRLSRELPFGPVPAHSLRKEYSDMECAIELVENVDDA 2037
PL + F R +LK+ RIVVK+GSAV+TR DE G+ALGRLA+IVEQVS LQN G+EMM++TSGAVAFG+Q LR+E+ + Q++R +L ++ +++RACAA GQ GL++LYE MF QY + AQ+L+T D + R NL T+ EL+RMN VPI+N NDAVVPP P DL G+ + +++KDNDSLAA LAVEM DLL++LSDV+G++ +PP + ++L+ IF P D+ V FG + S+VG GGME+KV A+L+AL+GGTSVVIANG ++ + + DIV GKK+GTFF+ + +E Q AR+G + LA L P +RA+II LA+L+ + EIL AN+KD+E A +G +AA L+ RL+L+ KLN L GLRQIA SS++ +GR +R TR+ L+L Q+TVPIGVLLVIFESRPDCLPQVAAL+IASGNGLLLKGGKEA HSN L L ++ALS+HGV A+ LV++++EV DL R+ + IDL+IPRGSS+++ +I++ +K IPV+GH+EGICH++VD +A ++ R+V DSKC YPAACNA+ETLL+ + L T FD+++ L+ VK HAGP+ + L F P SLR EY D+E IE+V+NV DA
Sbjct: 52 PLSRTHGKSFAHRSELKHAKRIVVKLGSAVVTRGDECGLALGRLASIVEQVSVLQNQGREMMLVTSGAVAFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQYSICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGV-----NVISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFG-TKSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEVKPAGPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA--EGRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVK--EAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDA 684 HSP 2 Score: 190.274 bits (482), Expect = 5.714e-50 Identity = 88/132 (66.67%), Postives = 106/132 (80.30%), Query Frame = 3
Query: 2043 FGPVPAHSLRKEYSDMECAIELVENVDDAIKHIENHGSSHTDSIITENEATASKFLKNVDSACVFHNASTRFADGYRFGLGAEVGISTTKIHARGPVGVEGLLTTKWVLKGHGHCVTDFGEGGQYQYIHQEL 2438
F P SLR EY D+E IE+V+NV DAI HI +GSSHTD I+TE+E TA FL++VDSACVF NASTRF+DGYRFGLGAEVGIST++IHARGPVG+EGLLTTKW+L+G H V+DF E G +Y+H+ L
Sbjct: 656 FSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENL 787 The following BLAST results are available for this feature:
BLAST of TCONS_00019582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.