TCONS_00019589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019589
Unique NameTCONS_00019589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019589 ID=TCONS_00019589|Name=TCONS_00019589|organism=Clytia hemisphaerica|type=transcript|length=1725bp
caaaaattgttcgatttggctaaaattttgcacacttgttccttgggtga
atatctggaggtgctttttgcatttttcaaaaattcagatttttggggcc
tggggacgagttttttgccaaaaccaggctaaagctttgaagcagcctac
aggcctccaaaatggtcggatttggttgaaatttggcacacttgttcatt
gggtaaatatctgggggNGTAAAACACACTTGAAACAATGGGATTCAATA
TTGTTATTGCAGGGTAAAAACTAAAACACAAAAATGGCAGAACCAGAAAA
GGTGCCACCAGTAAGCTATCAACAGCCAGGTGCTCAACCTCACTATCAAC
CAACAGCACAATACCAACAACCTGTTGCTGGTGGACCACCCGGTCAACCT
CAATTTGGTGCTGCAGCGGGTATGCAATGGATGCCACCTGTCCAACAAGC
TCCTGTTGGGTGTCCTCGTGGATTGGAATATTTAACACAACTTGATCAAT
TGATTGTTAAGCAACAAATAGAACTTTTAGAAGTATTCACTGGCTGGGAA
ACAAATAACAAGTATCGTATTTTGAATTCTGTTGGTCAggatgtttattt
tgctgtagAAGATAATGATTGTTGCAACAGACAATGTTGTGGACCAGCTC
GATCATTTAACATGAAGGTGTTGGACAACTATCAACAAGAAATTATTTCG
TTGTGGCGTCCCCTCAAATGTCAAGCCTGTTGCTGTTGGTGCTGCTTGCA
AGAAATGGAAATCAGATCTGGCGGTGAAATTTGTGGATATGTTGAACAGA
AGTGGTCACTGTGGGATTACAAATTTGATTTGATGGATGCTCAACGAAAC
ACAGTGTTGAAAATAAGAGGACCGTGCTGCGTCATTCCATGTTGTGTTGA
TGTCAATTTTCaaTTGCTGGCATTAGATGAAACTACCCAAGTTGGAGAGA
TCATTCGGCAGTTCACTGGATGTGGCCAAGAATGTTGGACTGATGCCAGT
AACTTCTCCATAACATTTCCCATGGACTTGGATGTTAAAATGAAGGCTGT
TGTTTTTGGAGCTACTATGCTTCtgGACTTTATGTTCTTTGAGcaccaaa
acaacaacaattagCTTTACAACTGGCATATTAAATATCAAAGTGGTTGG
AAACTGGTTAAATACTACAATTTGTTAAggttaaaatttaaattttgttt
gttcTCTGTATAATCGAATTGCATcgcatttattttttctttttaaaaat
catatcGATAATTTTCCTTATTTTGGACAGCTCTAATAATCCAAGCAAac
tttgaaagtttgaagagTGTATGTACAATAGATAATTCCAGAAAGTCTTC
AAAAGTATGTATGATTGTTATCCTCATAactaaagataatttttttcata
ggaTCGTATTGTAATAGTCATTGTAATTAGCTTTTTTTATACCTCGAGTG
AATTTAGTTACAAGAAAGCACAAGGTTGGTTTAAACGTTGAGTAATGTAA
ATTCACTTGAAGTATACTTATCTGGTTGTAAATATTTAAATCcgtttata
ttttttcttttctatggTTATTCTTCCTTTGTTGTACAatctaaataatt
ttttcctcaTAATGTATACACAATCATATTGGTTCACTTTTAAAGGTATA
Ctcgcacttttttcttgttttatttgattagatttgaataaaaaattcta
CAGAAAATCCATCTCTTTGTTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00019589-protein

>TCONS_00019589-protein ID=TCONS_00019589-protein|Name=TCONS_00019589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MAEPEKVPPVSYQQPGAQPHYQPTAQYQQPVAGGPPGQPQFGAAAGMQWM
PPVQQAPVGCPRGLEYLTQLDQLIVKQQIELLEVFTGWETNNKYRILNSV
GQDVYFAVEDNDCCNRQCCGPARSFNMKVLDNYQQEIISLWRPLKCQACC
CWCCLQEMEIRSGGEICGYVEQKWSLWDYKFDLMDAQRNTVLKIRGPCCV
IPCCVDVNFQLLALDETTQVGEIIRQFTGCGQECWTDASNFSITFPMDLD
VKMKAVVFGATMLLDFMFFEHQNNNN
Run BLAST on NCBI

transcript from alignment at sc0000331:319207..323106-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019589 ID=TCONS_00019589|Name=TCONS_00019589|organism=Clytia hemisphaerica|type=transcript|length=3900bp|location=Sequence derived from alignment at sc0000331:319207..323106- (Clytia hemisphaerica)
CAAAAATTGTTCGATTTGGCTAAAATTTTGCACACTTGTTCCTTGGGTGA
ATATCTGGAGGTGCTTTTTGCATTTTTCAAAAATTCAGATTTTTGGGGCC
TGGGGACGAGTTTTTTGCCAAAACCAGGCTAAAGCTTTGAAGCAGCCTAC
AGGCCTCCAAAATGGTCGGATTTGGTTGAAATTTGGCACACTTGTTCATT
GGGTAAATATCTGGGGGNGTAAAACACACTTGAAACAATGGGATTCAATA
TTGTTATTGCAGGGTAAAAACTAAAACACAAAAATGGCAGAACCAGAAAA
GGTGCCACCAGTAAGCTATCAACAGCCAGGTGCTCAACCTCACTATCAAC
CAACAGCACAATACCAACAACCTGTTGCTGGTGGACCACCCGGTCAACCT
CAATTTGGTGCTGCAGGTAATACTTTTTTTTTAATTGTGTCATTTTAAAA
AATGTCAAAAAGTTTTTTTTAAATTATAGTTAACAAAAGTTATTGTTACC
ACTATTATTATAATCTTTTTGCTAAATTTTATTATTTATTTCTGTGCCAA
ACCTGTGTGTGCTACCTTCCCAATCTTCTTTTAGCGGGTATGCAATGGAT
GCCACCTGTCCAACAAGCTCCTGTTGGGTGTCCTCGTGGATTGGAATATT
TAACACAACTTGATCAATTGATTGTTAAGCAACAAATAGAACTTTTAGAA
GGTAAACCATGTAGTATATGCTTTTGCCAAATCAATTATGAAAACAAGAT
TCTGAACAAACCATTTTGTTGATACAAACATTTACAAACACTTAATGATA
ATGCATACTTTTTTTAGTATTCACTGGCTGGGAAACAAATAACAAGTATC
GTATTTTGAATTCTGTTGGTCAGGATGTTTATTTTGCTGTAGAAGGTAAG
GAATTTTATGTTCAAAGCCGAAAGTTTAATTTGAATTTCGAAGTTCAATT
TATTTTTTCACAGATATTTTCTGCACTGCTGCAAGATTGTTATCAAATGA
ACATAACTGATAAATTTTAACTATAAAATCACATTCCAGCTTGGCAGGAA
GATGTTTTAAGAATTTTCATTTCTAGAACCAAAGAACCGACTTAAAGTTT
TTGTAGGTGCTGCAAATCTTGCCATTGAAAAGGTTATTGTCTATAAAGCC
TTTATATTTCCTTCCTGCTGTTATATATACCTAAGTAAAAGAGCTATTTA
TTGATCCTAATTTTCAGAAGAAAATACATCAACTCTAAGAGTTATTTCAC
TCTAAAAGAAAATGTTTTTGGTATCCCTGACAATGTTTTTAGTTGTTCGT
GATTGTGAATCTCACATATTTATCAAAATTNGACAATGTTTTTAGTTGTT
CGTAATTGTGAATCTCAACAAATTTGTCAAAATAAACTATTACAGATAAT
GATTGTTGCAACAGACAATGTTGTGGACCAGCTCGATCATTTAACATGAA
GGTGTTGGACAACTATCAACAAGAAATTATTTCGTTGTGGCGTCCCCTCA
AATGTCAAGCCTGTTGCTGTTGGTGCTGCTTGCAAGAAATGGAAATCAGA
TCTGGCGGTGAAATTTGTGGATATGTTGAACAGAAGTATCCTTAATTAAT
TGTATTTTACTCAGCTGATCTTAACTTGCTTGGCTAATCCTTTCCTCAAT
TTTATTGTCTTACCAGCGTAGAAGCATTTTACGTTTTGAAGATGTTTTTT
CATCATTAAAATTTTAATCTTTCAGGTGGTCACTGTGGGATTACAAATTT
GATTTGATGGATGCTCAACGAAACACAGTGTTGAAAATAAGAGGACCGTG
CTGCGTCATTCCATGTTGTGTTGATGTCAATTTTCAAGTAAGAATTTTTT
TCACTTACAATGAGCATGAAGGTAATAAAAATACAGATGGAGAGAAAACG
TCTTGGTAATGACCTAAATGGTCGTTGAAATCTTTTATAAATCTATTCAA
AGCGGCTTTTCTTTAATGTACCATCATTGGAAGCAAAAAACATCAATTTA
TAACTTTATAAGAACAGAAAGAGGCTGGTTCGTTTATTTTGAAAAACTTA
ATTTTGCGAGAAATCTTAGTTAAAATGCGATTCGAAATAGTTTCAACTGA
TTTAAGGATAAAAGAATATATTAATTTCATAAGGATATATTTCTGGGCTG
GCATTTGTTAACATTGAGATTTACATCACATTATCCTTGAAAGTTTCTTA
TCTTAAAATCTTCACGTCTATAAGTGGGCAGCGGTTTTCATACTCTGATA
AAATGATCGATACAAGGTTCCTAATCGTAACACGTAATTCTTTTTTAAAT
CTATCGATGGCTTTATAGGCAGCTTCCCCTAAAAGTTTGGAGTATTGTGC
TTATTATGTGATTTTTTTTTCAATTTTTCATGACAAGGCTTATATTTCAA
TATACTTGTTAAAAATGTAATGTCTTTTCATTCATCTTAAATATTCCTAC
GAGTATACCCAAAATTAATCATCTTATTCCCAAAGCAACCAAACAGCTGT
TTGCTTCCGATGATAAATCAGAATAGAACAAAAGGCATTGACTCTCCATC
TATCTTTATTACCTTCATGCAATGAGCGAGCAAAGAAAAGTAAAAATAGA
GCCTCACCTTCTCTGTAAGTTTCTGGAGAAGAAAATTGGCTGAAACTGAC
ACAAATAATCGCGTCCCGTCATGTAAATTGTAATGAAATAATCGAGTTTA
ACATAAAATTATTTCTCTTTTAGTTGCTGGCATTAGATGAAACTACCCAA
GTTGGAGAGATCATTCGGCAGTTCACTGGATGTGGCCAAGAATGTTGGAC
TGATGCCAGTAACTTCTCCATAACATGTAAGCCTGTAACATTTGCCATCG
TAGAATTGTCAATACTGATCAGATAAATCGATCTTTATTATCTTGAAAAG
TTAATCTTCATACTCTCTGGTAGATTTTATTCGAATGACATTTTAATCCT
ATTTTGTTTCAAAGGTGTGCTTTCACTTAACCACTTTGTTTATTGAAAAA
ATGTGTATATTTTCTAACTTTTCAGTTCCCATGGACTTGGATGTTAAAAT
GAAGGCTGTTGTTTTTGGAGCTACTATGCTTCTGGTATGTTTTTTTCTTA
GTATCAAAACTATATGTAAAAAATAAATCATTCTTAAGATAAGAAAATCC
ATAGAAAGACAATTGATTGAATGAGGAGGTAGATTCTCTCATAGGAAAAC
TGCTACAGTTAAACTGTTTTTCACGATGTACCTTTTTTCTCTCTTTACAG
GACTTTATGTTCTTTGAGCACCAAAACAACAACAATTAGCTTTACAACTG
GCATATTAAATATCAAAGTGGTTGGAAACTGGTTAAATACTACAATTTGT
TAAGGTTAAAATTTAAATTTTGTTTGTTCTCTGTATAATCGAATTGCATC
GCATTTATTTTTTCTTTTTAAAAATCATATCGATAATTTTCCTTATTTTG
GACAGCTCTAATAATCCAAGCAAACTTTGAAAGTTTGAAGAGTGTATGTA
CAATAGATAATTCCAGAAAGTCTTCAAAAGTATGTATGATTGTTATCCTC
ATAACTAAAGATAATTTTTTTCATAGGATCGTATTGTAATAGTCATTGTA
ATTAGCTTTTTTTATACCTCGAGTGAATTTAGTTACAAGAAAGCACAAGG
TTGGTTTAAACGTTGAGTAATGTAAATTCACTTGAAGTATACTTATCTGG
TTGTAAATATTTAAATCCGTTTATATTTTTTCTTTTCTATGGTTATTCTT
CCTTTGTTGTACAATCTAAATAATTTTTTCCTCATAATGTATACACAATC
ATATTGGTTCACTTTTAAAGGTATACTCGCACTTTTTTCTTGTTTTATTT
GATTAGATTTGAATAAAAAATTCTACAGAAAATCCATCTCTTTGTTTTCT

Coding sequence (CDS) from alignment at sc0000331:319207..323106-

>TCONS_00019589 ID=TCONS_00019589|Name=TCONS_00019589|organism=Clytia hemisphaerica|type=CDS|length=6648bp|location=Sequence derived from alignment at sc0000331:319207..323106- (Clytia hemisphaerica)
GACTTTATGTTCTTTGAGCACCAAAACAACAACAATTAGTTCCCATGGAC
TTGGATGTTAAAATGAAGGCTGTTGTTTTTGGAGCTACTATGCTTCTGTT
GCTGGCATTAGATGAAACTACCCAAGTTGGAGAGATCATTCGGCAGTTCA
CTGGATGTGGCCAAGAATGTTGGACTGATGCCAGTAACTTCTCCATAACA
TGTGGTCACTGTGGGATTACAAATTTGATTTGATGGATGCTCAACGAAAC
ACAGTGTTGAAAATAAGAGGACCGTGCTGCGTCATTCCATGTTGTGTTGA
TGTCAATTTTCAAATAATGATTGTTGCAACAGACAATGTTGTGGACCAGC
TCGATCATTTAACATGAAGGTGTTGGACAACTATCAACAAGAAATTATTT
CGTTGTGGCGTCCCCTCAAATGTCAAGCCTGTTGCTGTTGGTGCTGCTTG
CAAGAAATGGAAATCAGATCTGGCGGTGAAATTTGTGGATATGTTGAACA
GAATATTCACTGGCTGGGAAACAAATAACAAGTATCGTATTTTGAATTCT
GTTGGTCAGGATGTTTATTTTGCTGTAGAAGCGGGTATGCAATGGATGCC
ACCTGTCCAACAAGCTCCTGTTGGGTGTCCTCGTGGATTGGAATATTTAA
CACAACTTGATCAATTGATTGTTAAGCAACAAATAGAACTTTTAGAAGAT
GGCAGAACCAGAAAAGGTGCCACCAGTAAGCTATCAACAGCCAGGTGCTC
AACCTCACTATCAACCAACAGCACAATACCAACAACCTGTTGCTGGTGGA
CCACCCGGTCAACCTCAATTTGGTGCTGCAGGACTTTATGTTCTTTGAGC
ACCAAAACAACAACAATTAGTTCCCATGGACTTGGATGTTAAAATGAAGG
CTGTTGTTTTTGGAGCTACTATGCTTCTGTTGCTGGCATTAGATGAAACT
ACCCAAGTTGGAGAGATCATTCGGCAGTTCACTGGATGTGGCCAAGAATG
TTGGACTGATGCCAGTAACTTCTCCATAACATGTGGTCACTGTGGGATTA
CAAATTTGATTTGATGGATGCTCAACGAAACACAGTGTTGAAAATAAGAG
GACCGTGCTGCGTCATTCCATGTTGTGTTGATGTCAATTTTCAAATAATG
ATTGTTGCAACAGACAATGTTGTGGACCAGCTCGATCATTTAACATGAAG
GTGTTGGACAACTATCAACAAGAAATTATTTCGTTGTGGCGTCCCCTCAA
ATGTCAAGCCTGTTGCTGTTGGTGCTGCTTGCAAGAAATGGAAATCAGAT
CTGGCGGTGAAATTTGTGGATATGTTGAACAGAATATTCACTGGCTGGGA
AACAAATAACAAGTATCGTATTTTGAATTCTGTTGGTCAGGATGTTTATT
TTGCTGTAGAAGCGGGTATGCAATGGATGCCACCTGTCCAACAAGCTCCT
GTTGGGTGTCCTCGTGGATTGGAATATTTAACACAACTTGATCAATTGAT
TGTTAAGCAACAAATAGAACTTTTAGAAGATGGCAGAACCAGAAAAGGTG
CCACCAGTAAGCTATCAACAGCCAGGTGCTCAACCTCACTATCAACCAAC
AGCACAATACCAACAACCTGTTGCTGGTGGACCACCCGGTCAACCTCAAT
TTGGTGCTGCAGGACTTTATGTTCTTTGAGCACCAAAACAACAACAATTA
GTTCCCATGGACTTGGATGTTAAAATGAAGGCTGTTGTTTTTGGAGCTAC
TATGCTTCTGTTGCTGGCATTAGATGAAACTACCCAAGTTGGAGAGATCA
TTCGGCAGTTCACTGGATGTGGCCAAGAATGTTGGACTGATGCCAGTAAC
TTCTCCATAACATGTGGTCACTGTGGGATTACAAATTTGATTTGATGGAT
GCTCAACGAAACACAGTGTTGAAAATAAGAGGACCGTGCTGCGTCATTCC
ATGTTGTGTTGATGTCAATTTTCAAATAATGATTGTTGCAACAGACAATG
TTGTGGACCAGCTCGATCATTTAACATGAAGGTGTTGGACAACTATCAAC
AAGAAATTATTTCGTTGTGGCGTCCCCTCAAATGTCAAGCCTGTTGCTGT
TGGTGCTGCTTGCAAGAAATGGAAATCAGATCTGGCGGTGAAATTTGTGG
ATATGTTGAACAGAATATTCACTGGCTGGGAAACAAATAACAAGTATCGT
ATTTTGAATTCTGTTGGTCAGGATGTTTATTTTGCTGTAGAAGCGGGTAT
GCAATGGATGCCACCTGTCCAACAAGCTCCTGTTGGGTGTCCTCGTGGAT
TGGAATATTTAACACAACTTGATCAATTGATTGTTAAGCAACAAATAGAA
CTTTTAGAAGATGGCAGAACCAGAAAAGGTGCCACCAGTAAGCTATCAAC
AGCCAGGTGCTCAACCTCACTATCAACCAACAGCACAATACCAACAACCT
GTTGCTGGTGGACCACCCGGTCAACCTCAATTTGGTGCTGCAGGACTTTA
TGTTCTTTGAGCACCAAAACAACAACAATTAGTTCCCATGGACTTGGATG
TTAAAATGAAGGCTGTTGTTTTTGGAGCTACTATGCTTCTGTTGCTGGCA
TTAGATGAAACTACCCAAGTTGGAGAGATCATTCGGCAGTTCACTGGATG
TGGCCAAGAATGTTGGACTGATGCCAGTAACTTCTCCATAACATGTGGTC
ACTGTGGGATTACAAATTTGATTTGATGGATGCTCAACGAAACACAGTGT
TGAAAATAAGAGGACCGTGCTGCGTCATTCCATGTTGTGTTGATGTCAAT
TTTCAAATAATGATTGTTGCAACAGACAATGTTGTGGACCAGCTCGATCA
TTTAACATGAAGGTGTTGGACAACTATCAACAAGAAATTATTTCGTTGTG
GCGTCCCCTCAAATGTCAAGCCTGTTGCTGTTGGTGCTGCTTGCAAGAAA
TGGAAATCAGATCTGGCGGTGAAATTTGTGGATATGTTGAACAGAATATT
CACTGGCTGGGAAACAAATAACAAGTATCGTATTTTGAATTCTGTTGGTC
AGGATGTTTATTTTGCTGTAGAAGCGGGTATGCAATGGATGCCACCTGTC
CAACAAGCTCCTGTTGGGTGTCCTCGTGGATTGGAATATTTAACACAACT
TGATCAATTGATTGTTAAGCAACAAATAGAACTTTTAGAAGATGGCAGAA
CCAGAAAAGGTGCCACCAGTAAGCTATCAACAGCCAGGTGCTCAACCTCA
CTATCAACCAACAGCACAATACCAACAACCTGTTGCTGGTGGACCACCCG
GTCAACCTCAATTTGGTGCTGCAGGACTTTATGTTCTTTGAGCACCAAAA
CAACAACAATTAGTTCCCATGGACTTGGATGTTAAAATGAAGGCTGTTGT
TTTTGGAGCTACTATGCTTCTGTTGCTGGCATTAGATGAAACTACCCAAG
TTGGAGAGATCATTCGGCAGTTCACTGGATGTGGCCAAGAATGTTGGACT
GATGCCAGTAACTTCTCCATAACATGTGGTCACTGTGGGATTACAAATTT
GATTTGATGGATGCTCAACGAAACACAGTGTTGAAAATAAGAGGACCGTG
CTGCGTCATTCCATGTTGTGTTGATGTCAATTTTCAAATAATGATTGTTG
CAACAGACAATGTTGTGGACCAGCTCGATCATTTAACATGAAGGTGTTGG
ACAACTATCAACAAGAAATTATTTCGTTGTGGCGTCCCCTCAAATGTCAA
GCCTGTTGCTGTTGGTGCTGCTTGCAAGAAATGGAAATCAGATCTGGCGG
TGAAATTTGTGGATATGTTGAACAGAATATTCACTGGCTGGGAAACAAAT
AACAAGTATCGTATTTTGAATTCTGTTGGTCAGGATGTTTATTTTGCTGT
AGAAGCGGGTATGCAATGGATGCCACCTGTCCAACAAGCTCCTGTTGGGT
GTCCTCGTGGATTGGAATATTTAACACAACTTGATCAATTGATTGTTAAG
CAACAAATAGAACTTTTAGAAGATGGCAGAACCAGAAAAGGTGCCACCAG
TAAGCTATCAACAGCCAGGTGCTCAACCTCACTATCAACCAACAGCACAA
TACCAACAACCTGTTGCTGGTGGACCACCCGGTCAACCTCAATTTGGTGC
TGCAGGACTTTATGTTCTTTGAGCACCAAAACAACAACAATTAGTTCCCA
TGGACTTGGATGTTAAAATGAAGGCTGTTGTTTTTGGAGCTACTATGCTT
CTGTTGCTGGCATTAGATGAAACTACCCAAGTTGGAGAGATCATTCGGCA
GTTCACTGGATGTGGCCAAGAATGTTGGACTGATGCCAGTAACTTCTCCA
TAACATGTGGTCACTGTGGGATTACAAATTTGATTTGATGGATGCTCAAC
GAAACACAGTGTTGAAAATAAGAGGACCGTGCTGCGTCATTCCATGTTGT
GTTGATGTCAATTTTCAAATAATGATTGTTGCAACAGACAATGTTGTGGA
CCAGCTCGATCATTTAACATGAAGGTGTTGGACAACTATCAACAAGAAAT
TATTTCGTTGTGGCGTCCCCTCAAATGTCAAGCCTGTTGCTGTTGGTGCT
GCTTGCAAGAAATGGAAATCAGATCTGGCGGTGAAATTTGTGGATATGTT
GAACAGAATATTCACTGGCTGGGAAACAAATAACAAGTATCGTATTTTGA
ATTCTGTTGGTCAGGATGTTTATTTTGCTGTAGAAGCGGGTATGCAATGG
ATGCCACCTGTCCAACAAGCTCCTGTTGGGTGTCCTCGTGGATTGGAATA
TTTAACACAACTTGATCAATTGATTGTTAAGCAACAAATAGAACTTTTAG
AAGATGGCAGAACCAGAAAAGGTGCCACCAGTAAGCTATCAACAGCCAGG
TGCTCAACCTCACTATCAACCAACAGCACAATACCAACAACCTGTTGCTG
GTGGACCACCCGGTCAACCTCAATTTGGTGCTGCAGGACTTTATGTTCTT
TGAGCACCAAAACAACAACAATTAGTTCCCATGGACTTGGATGTTAAAAT
GAAGGCTGTTGTTTTTGGAGCTACTATGCTTCTGTTGCTGGCATTAGATG
AAACTACCCAAGTTGGAGAGATCATTCGGCAGTTCACTGGATGTGGCCAA
GAATGTTGGACTGATGCCAGTAACTTCTCCATAACATGTGGTCACTGTGG
GATTACAAATTTGATTTGATGGATGCTCAACGAAACACAGTGTTGAAAAT
AAGAGGACCGTGCTGCGTCATTCCATGTTGTGTTGATGTCAATTTTCAAA
TAATGATTGTTGCAACAGACAATGTTGTGGACCAGCTCGATCATTTAACA
TGAAGGTGTTGGACAACTATCAACAAGAAATTATTTCGTTGTGGCGTCCC
CTCAAATGTCAAGCCTGTTGCTGTTGGTGCTGCTTGCAAGAAATGGAAAT
CAGATCTGGCGGTGAAATTTGTGGATATGTTGAACAGAATATTCACTGGC
TGGGAAACAAATAACAAGTATCGTATTTTGAATTCTGTTGGTCAGGATGT
TTATTTTGCTGTAGAAGCGGGTATGCAATGGATGCCACCTGTCCAACAAG
CTCCTGTTGGGTGTCCTCGTGGATTGGAATATTTAACACAACTTGATCAA
TTGATTGTTAAGCAACAAATAGAACTTTTAGAAGATGGCAGAACCAGAAA
AGGTGCCACCAGTAAGCTATCAACAGCCAGGTGCTCAACCTCACTATCAA
CCAACAGCACAATACCAACAACCTGTTGCTGGTGGACCACCCGGTCAACC
TCAATTTGGTGCTGCAGGACTTTATGTTCTTTGAGCACCAAAACAACAAC
AATTAGTTCCCATGGACTTGGATGTTAAAATGAAGGCTGTTGTTTTTGGA
GCTACTATGCTTCTGTTGCTGGCATTAGATGAAACTACCCAAGTTGGAGA
GATCATTCGGCAGTTCACTGGATGTGGCCAAGAATGTTGGACTGATGCCA
GTAACTTCTCCATAACATGTGGTCACTGTGGGATTACAAATTTGATTTGA
TGGATGCTCAACGAAACACAGTGTTGAAAATAAGAGGACCGTGCTGCGTC
ATTCCATGTTGTGTTGATGTCAATTTTCAAATAATGATTGTTGCAACAGA
CAATGTTGTGGACCAGCTCGATCATTTAACATGAAGGTGTTGGACAACTA
TCAACAAGAAATTATTTCGTTGTGGCGTCCCCTCAAATGTCAAGCCTGTT
GCTGTTGGTGCTGCTTGCAAGAAATGGAAATCAGATCTGGCGGTGAAATT
TGTGGATATGTTGAACAGAATATTCACTGGCTGGGAAACAAATAACAAGT
ATCGTATTTTGAATTCTGTTGGTCAGGATGTTTATTTTGCTGTAGAAGCG
GGTATGCAATGGATGCCACCTGTCCAACAAGCTCCTGTTGGGTGTCCTCG
TGGATTGGAATATTTAACACAACTTGATCAATTGATTGTTAAGCAACAAA
TAGAACTTTTAGAAGATGGCAGAACCAGAAAAGGTGCCACCAGTAAGCTA
TCAACAGCCAGGTGCTCAACCTCACTATCAACCAACAGCACAATACCAAC
AACCTGTTGCTGGTGGACCACCCGGTCAACCTCAATTTGGTGCTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011013XLOC_011013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019589-exon-sc0000331-1575043694:322691..323106TCONS_00019589-exon-sc0000331-1575043694:322691..323106Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:322406..322522TCONS_00019589-exon-sc0000331-1575043694:322406..322522Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:322212..322289TCONS_00019589-exon-sc0000331-1575043694:322212..322289Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:321522..321711TCONS_00019589-exon-sc0000331-1575043694:321522..321711Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:321270..321381TCONS_00019589-exon-sc0000331-1575043694:321270..321381Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:320281..320383TCONS_00019589-exon-sc0000331-1575043694:320281..320383Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:320023..320081TCONS_00019589-exon-sc0000331-1575043694:320023..320081Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1575043694:319207..319856TCONS_00019589-exon-sc0000331-1575043694:319207..319856Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:322691..323106TCONS_00019589-exon-sc0000331-1510915933:322691..323106Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:322406..322522TCONS_00019589-exon-sc0000331-1510915933:322406..322522Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:322212..322289TCONS_00019589-exon-sc0000331-1510915933:322212..322289Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:321522..321711TCONS_00019589-exon-sc0000331-1510915933:321522..321711Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:321270..321381TCONS_00019589-exon-sc0000331-1510915933:321270..321381Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:320281..320383TCONS_00019589-exon-sc0000331-1510915933:320281..320383Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:320023..320081TCONS_00019589-exon-sc0000331-1510915933:320023..320081Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1510915933:319207..319856TCONS_00019589-exon-sc0000331-1510915933:319207..319856Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:322691..323106TCONS_00019589-exon-sc0000331-1491911889:322691..323106Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:322406..322522TCONS_00019589-exon-sc0000331-1491911889:322406..322522Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:322212..322289TCONS_00019589-exon-sc0000331-1491911889:322212..322289Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:321522..321711TCONS_00019589-exon-sc0000331-1491911889:321522..321711Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:321270..321381TCONS_00019589-exon-sc0000331-1491911889:321270..321381Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:320281..320383TCONS_00019589-exon-sc0000331-1491911889:320281..320383Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:320023..320081TCONS_00019589-exon-sc0000331-1491911889:320023..320081Clytia hemisphaericaexon
TCONS_00019589-exon-sc0000331-1491911889:319207..319856TCONS_00019589-exon-sc0000331-1491911889:319207..319856Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019589-proteinTCONS_00019589-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:319207..323106 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
206.756	195.3	362.238	391.696	55.7966	44.1162	83.0107	89.8255	130.586	98.5574	100.585	117.512	129.414	127.686	93.1317	91.4651	184.569	220.055	181.477	198.591	324.776	318.937	144.439	159.051	126.459	113.758	167.45	134.44	77.8552	72.8555
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005552Scramblase
Blast
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BLAST of TCONS_00019589 vs. Swiss-Prot (Human)
Match: PLS1 (Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.288e-77
Identity = 129/225 (57.33%), Postives = 164/225 (72.89%), Query Frame = 2 
Query:  422 MQWMPPVQQAPVGCPRGLEYLTQLDQLIVKQQIELLEVFTGWETNNKYRILNSVGQDVYFAVEDNDCCNRQCCGPARSFNMKVLDNYQQEIISLWRPLKXXXXXXXXXLQEMEIRS-GGEICGYVEQKWSLWDYKFDLMDAQRNTVLKIRGPCCVIPCCVDVNFQLLALDETTQVGEIIRQFTGCGQECWTDASNFSITFPMDLDVKMKAVVFGATMLLDFMFFE 1093
            + WMP   Q P+ CP GLEYL+Q+DQ+++ QQIELLEV TG+ETNNKY I NS GQ VYFA ED DCC R CCGP+R F ++++DN  QE+I+L RPL+C +CCC CCLQE+EI++  G   GYV Q W     KF + + +R  VLKI GPC V  CC DV+F++ +LDE   VG+I + +TG  +E +TDA NF I FP+DLDVKMKAV+ GA  L+DFMFFE
Sbjct:   83 VPWMP-APQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDFMFFE 306
The following BLAST results are available for this feature:
BLAST of TCONS_00019589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLS15.288e-7757.33Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR... [more]
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