|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019610 ID=TCONS_00019610|Name=TCONS_00019610|organism=Clytia hemisphaerica|type=transcript|length=4210bp
GAAGAATTATATAATTAGAATCATGGGTAAAGTTTGCAGTGCTGCAAACT
GCACAAACAGGCAAGGTTTTCCAAagtcaacatcaaaacatttctATGGA
CTTCCAACTGATCCAGAAAGGAGAAGAAAATGGATTGCATTCTTAAATAG
AAAAAAGCTTCCTCAATTGAAATATGTCAGTGTTTGTGGTGCTCATTTTG
TGTCAGGTGAGAAGAGCCAGAATTCTCTACATCCAGACTTTATTCCAACT
ATTCAACTGTCACCAAGGAAGAAGATTTCATCAACCAAAAATTCCATCAA
TTCGAACACTCCCAAGAAAGTTATTTCACCTAGGAAAGCATGGACTCCat
ctaaaagtttaaaaagactTCAACGCCATAAAAAACTCAATGAGGCTAGA
GAACGGTATCGCATTAAGAAAATTGAGTCAAGCTCATTGTCAGCAACATC
AAGTACAAAACAGTCAAATAAAGTCttacaaaatgatgaaaattctGATC
CAAATGAAAATGACATTTCAGATCAAGAACCTCTAAGTGAAATGCAAAAA
ATGAGTGATGAGTTAGAAGCAATGCgtgatgaaattgaaatgttgaGAGC
gaccttaaaaatgaaagaaagtgaaatTGATGACCAACatgaaagaatta
aaaatctaGAGGATGATTTGAAAAATGCCAATGGAAAAATAGAACAATTG
ACCTTTCTTGATTACTCAGAAAAAACTCTAAAATTTTACACAGGTTTGCC
AAATATTcaagtatttgaaataatttttgccAGCTGTTGTGAACATATTT
ATCACGATAATCGAAACAAATTAACCAAAAGACAAGAAATTTTCATGGTT
TTGATGAGACTGCGTCTTGGCTTACTGGAAGATGACCTGGCTTTTCGCTT
TGGAATTGACCAGTCAAATGTTTCAAGAATCTTAAACAAATGGTTGTGTG
TACTATCTCAAAgactttcttttttgataacttGGCCTGAAAGGGACCAA
TTGAGAAAGACCATGCCAAGCTGCTTTTTAGAAAGCTTTGACAAGTGTGC
AGTTATACTTGATTGTTTTGAACTGTTTATTGAGAAGCCATCTGATTTAT
ATGCAAGGGCTCAGACATATTCTCAGTACAAAAGTCATAACACAGCAAAA
GTTCTCTTGGGGATAACCCCTCAAGGGACAATATCATATGTCTCAAAACC
ATATGGAGGTAGGACCTCAGATGTATTTTTAACCGAAAATTGTGGCATAT
TGAAAAACCTACTACCAGGTGATGTTGTACTTGCTGATAGAGGATTTACA
ATTGGAGATTCTGTAGGGTTGTATTGTGCTGAGTTAAAAATCCCGCAATT
TACAAAAGGTAAAACTCAGTTATCCCAAAGACATgttgaagaaacaaaaa
atttggCAAGTGTTCGAATTCATGTTGAGCGTGTCATTGGACTCTTGAGA
AACAAATTCACTATTTTACAAAGTATTTTACCTATAAAAATGATCATGAA
AAAAGTAGATGGAACTTGTACTTTAACAGACATTCTAATTGTTTGTTCAT
CAATTTGTAACTTGTGTGACTCAGTTGTACCAGTTGATTGAGATTTTGAT
TTGTTAATTTACCAGAAGCTTATATCTTTCAGTTCACTAAATTTGTCAAA
CTATCGAAAGTTGATTAGCAATAAATTTACTTAGTTATAACTTAagattt
ggcaaatttgggGATTTtgccaaaatccgccaaattttaagttccagcca
aaatttctttcaataagATGcttattttattgtaaattttcttccaacaa
tgtaataatatcaaaagaataacaaaatagAGGTGAAATAATACAGTGTA
TCCAGAAAAAATGGTACAAGAttttatataaaatgaaatgcTCAAAAGAA
TATATCCCATGGGATTTGTTTGGActacttttataaaaaaatatataaat
aatatGAATATAAATTATGTGTACGGCTtctattttctttaaataacaaa
aatattaactttGAAATGAGAGTGAGAgcattttaaaaaagaaatttggt
caaattgtttatagaatttgaaattttcaaaataaagaatccAATGTTTT
ACTTATCAAaagaatttcataaattttatttcaaccTAGCTTTTGAACAA
CATTCTAATTTTATGTCAAGTGCTTTCAAAGATAGTTTTTGTTGAATATA
TACATGTAGAATAAGTTTTTGATGACAAAAATACCCTTATTAATTTTGAA
CTACTAACAATATGTCACTTTTAAGCTTATAAACTGaagagaaaaaagtt
aaaatgtaACAAAAGTTACTATTTACGGCTTCTCGATTTCTTTCTTCTGC
AATAAGGACAGTACCATTTTTTGGGGGGTTTTTTCTCTAAACCAAGACAT
TGTAAATGATAAGTTTTTACAACACAAGTTTTATCTGCACATAAAATTGT
CTCAGAGTCTCTCTCTTCTTGACATGTACAAATGTCCTTAGAATTTTCAG
TACCCTTATGGTAAATTTTAGGCTCAGTGATGTGTGATTTCGAATACCAC
TTTCCAAGAAGTTCTGGTAAaacagcaaaaataaaaaatcgtttTGCAAT
GTCAGTTTTCTCAGCAAGAAATTCAAGATCAACTTGTACTAGTTCATAAA
AGGATTCTTTTTTACCATAAACATAAAAGTGGCAATAGTTACAATTTGTC
AATAGCATTTCCAATTGAACTTGGTAATAATAAGCATGAGTCCTTTTAAG
CGATATGGGTGTTTTTTCATCCCCTTTTAGACAGAAATCTTTGTCATTTT
TTGCAAGGTCTTTTAtagatttgttttcaagtttATATGGACACTTTACT
TCAACAGCATAATGTCCAATATCTCTACAGCAGGAGCAGGTCATGATTCC
ATCTGGGGTTGCTCCAAGGAAAGGGAACTCTGTATTTCTGAAAAGTCCGC
AGTCAACAATTTTAACATCAGTGTGCTGCTTGGATAGCTCTTGTTTTAAA
CTCTCCACTGCTATCGGTTCATACTTAATACCGTGGTCTGTTGCAACAGT
TGTAAATCTCTTTTTCACTGGGTAGCAGACTTGGATAATAGTACTCTTAG
CTGGTTGACTGATATCTGTTTGACAACATAGTTTGAAACGACTAGCAGTA
ATAACACCTGCTCTGGCTTGGAACCAAAGACTGGACTTGGCCTGTTGCTT
TGTATGGTTTTCAATTTCAGTTACATCATCTGGTGAGATTTTAATTGACA
TGAATGTAATTAGACAGTGTCGTATAAGTTCATGATACAACATTTCTTCA
TATTTtaattgataaaatttgaataatacCCGCTCAAGCTTTCTGGCAGC
TGGTACAAATCTATCATTGTAACCTTCGATTAATCGTAAAATTGCACTTT
CAGGGTTAGCTTTTGACAAACAGAAGTAAAAGTTATCTTTATCAGCATCA
GTTAGGTTTGGTACCatttttctggttttcaccgGTGGAAGGACAACATC
AGCTTTATCTTTACTATCTCTTTTACgctttttttcatctttgtccTTAC
TTTTATCGTGAAAGTCAATATCACAAATAAGAGCAAAATCAACATTGTTA
ATTTTTGGTGGAAGCCAACCATTTGGGTCTGAGGTGACAGAGTCCGTAAA
ATGTCTTTTATAGTAGTCCATAGTAAACATGAGATAAAACATAATTGCAC
CAACGTGTGAACATGTTTCGCCAAGTCCTGCCATGCAAGTGCAATGGGCA
TTGATTATATCTCCAGACTTATAAACTCCAACCCAAGATTGATTAGGTTT
CTTGGTAAACATACTCTGTCCATGTTTGACAAGTCCATGCACAAGTAAAG
TATCATCTTTCAGTTTTTTAACCTTGACTTCATCAACTAATCCACTTTTT
ACATACTTGTAGGCCTCGAGAGACTTGTAGGCTTTCAAGCTGGTCTTTGT
GAAGTAGCTTGGAAAGTttatcaaataaacaaagatgTCTGCATACACTA
TGTCAGGCCAACCTCTGATGTCGTTAGTAAAGtcaaaatcagtgtttttc
agagTATATGGGTCCTGTTTAAGATCAAGTTGTGTTAGCTTTTCTTCATA
TCTTCTCTTTGCTGGATCCTCTAATTTATAATAATACTCAGATCTCACAA
TGTCTTTGCCTGATAATGatttcattttagattttaaagCAAAACATCAC
GTTTCATTCT Run BLAST on NCBI transcript from alignment at sc0000332:203605..207931+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019610 ID=TCONS_00019610|Name=TCONS_00019610|organism=Clytia hemisphaerica|type=transcript|length=4327bp|location=Sequence derived from alignment at sc0000332:203605..207931+ (Clytia hemisphaerica)
GAAGAATTATATAATTAGAATCATGGGTAAAGTTTGCAGTGCTGCAAACT
GCACAAACAGGCAAGGTTTTCCAAagtcaacatcaaaacatttctATGGA
CTTCCAACTGATCCAGAAAGGAGAAGAAAATGGATTGCATTCTTAAATAG
AAAAAAGCTTCCTCAATTGAAATATGTCAGTGTTTGTGGTGCTCATTTTG
TGTCAGGTAAGTGCTCAACCTTACATATGATGAGTTTCTCTCGCTTTCTA
CAAAGGTTAGGACCTATTTTACACAGTGTTGGCTATAAAGTTAATGATAA
TATTTTCTACATTATTTTTTCAGGTGAGAAGAGCCAGAATTCTCTACATC
CAGACTTTATTCCAACTATTCAACTGTCACCAAGGAAGAAGATTTCATCA
ACCAAAAATTCCATCAATTCGAACACTCCCAAGAAAGTTATTTCACCTAG
GAAAGCATGGACTCCatctaaaagtttaaaaagactTCAACGCCATAAAA
AACTCAATGAGGCTAGAGAACGGTATCGCATTAAGAAAATTGAGTCAAGC
TCATTGTCAGCAACATCAAGTACAAAACAGTCAAATAAAGTCttacaaaa
tgatgaaaattctGATCCAAATGAAAATGACATTTCAGATCAAGAACCTC
TAAGTGAAATGCAAAAAATGAGTGATGAGTTAGAAGCAATGCgtgatgaa
attgaaatgttgaGAGCgaccttaaaaatgaaagaaagtgaaatTGATGA
CCAACatgaaagaattaaaaatctaGAGGATGATTTGAAAAATGCCAATG
GAAAAATAGAACAATTGACCTTTCTTGATTACTCAGAAAAAACTCTAAAA
TTTTACACAGGTTTGCCAAATATTcaagtatttgaaataatttttgccAG
CTGTTGTGAACATATTTATCACGATAATCGAAACAAATTAACCAAAAGAC
AAGAAATTTTCATGGTTTTGATGAGACTGCGTCTTGGCTTACTGGAAGAT
GACCTGGCTTTTCGCTTTGGAATTGACCAGTCAAATGTTTCAAGAATCTT
AAACAAATGGTTGTGTGTACTATCTCAAAgactttcttttttgataactt
GGCCTGAAAGGGACCAATTGAGAAAGACCATGCCAAGCTGCTTTTTAGAA
AGCTTTGACAAGTGTGCAGTTATACTTGATTGTTTTGAACTGTTTATTGA
GAAGCCATCTGATTTATATGCAAGGGCTCAGACATATTCTCAGTACAAAA
GTCATAACACAGCAAAAGTTCTCTTGGGGATAACCCCTCAAGGGACAATA
TCATATGTCTCAAAACCATATGGAGGTAGGACCTCAGATGTATTTTTAAC
CGAAAATTGTGGCATATTGAAAAACCTACTACCAGGTGATGTTGTACTTG
CTGATAGAGGATTTACAATTGGAGATTCTGTAGGGTTGTATTGTGCTGAG
TTAAAAATCCCGCAATTTACAAAAGGTAAAACTCAGTTATCCCAAAGACA
TgttgaagaaacaaaaaatttggCAAGTGTTCGAATTCATGTTGAGCGTG
TCATTGGACTCTTGAGAAACAAATTCACTATTTTACAAAGTATTTTACCT
ATAAAAATGATCATGAAAAAAGTAGATGGAACTTGTACTTTAACAGACAT
TCTAATTGTTTGTTCATCAATTTGTAACTTGTGTGACTCAGTTGTACCAG
TTGATTGAGATTTTGATTTGTTAATTTACCAGAAGCTTATATCTTTCAGT
TCACTAAATTTGTCAAACTATCGAAAGTTGATTAGCAATAAATTTACTTA
GTTATAACTTAagatttggcaaatttgggGATTTtgccaaaatccgccaa
attttaagttccagccaaaatttctttcaataagATGcttattttattgt
aaattttcttccaacaatgtaataatatcaaaagaataacaaaatagAGG
TGAAATAATACAGTGTATCCAGAAAAAATGGTACAAGAttttatataaaa
tgaaatgcTCAAAAGAATATATCCCATGGGATTTGTTTGGActactttta
taaaaaaatatataaataatatGAATATAAATTATGTGTACGGCTtctat
tttctttaaataacaaaaatattaactttGAAATGAGAGTGAGAgcattt
taaaaaagaaatttggtcaaattgtttatagaatttgaaattttcaaaat
aaagaatccAATGTTTTACTTATCAAaagaatttcataaattttatttca
accTAGCTTTTGAACAACATTCTAATTTTATGTCAAGTGCTTTCAAAGAT
AGTTTTTGTTGAATATATACATGTAGAATAAGTTTTTGATGACAAAAATA
CCCTTATTAATTTTGAACTACTAACAATATGTCACTTTTAAGCTTATAAA
CTGaagagaaaaaagttaaaatgtaACAAAAGTTACTATTTACGGCTTCT
CGATTTCTTTCTTCTGCAATAAGGACAGTACCATTTTTTGGGGGGTTTTT
TCTCTAAACCAAGACATTGTAAATGATAAGTTTTTACAACACAAGTTTTA
TCTGCACATAAAATTGTCTCAGAGTCTCTCTCTTCTTGACATGTACAAAT
GTCCTTAGAATTTTCAGTACCCTTATGGTAAATTTTAGGCTCAGTGATGT
GTGATTTCGAATACCACTTTCCAAGAAGTTCTGGTAAaacagcaaaaata
aaaaatcgtttTGCAATGTCAGTTTTCTCAGCAAGAAATTCAAGATCAAC
TTGTACTAGTTCATAAAAGGATTCTTTTTTACCATAAACATAAAAGTGGC
AATAGTTACAATTTGTCAATAGCATTTCCAATTGAACTTGGTAATAATAA
GCATGAGTCCTTTTAAGCGATATGGGTGTTTTTTCATCCCCTTTTAGACA
GAAATCTTTGTCATTTTTTGCAAGGTCTTTTAtagatttgttttcaagtt
tATATGGACACTTTACTTCAACAGCATAATGTCCAATATCTCTACAGCAG
GAGCAGGTCATGATTCCATCTGGGGTTGCTCCAAGGAAAGGGAACTCTGT
ATTTCTGAAAAGTCCGCAGTCAACAATTTTAACATCAGTGTGCTGCTTGG
ATAGCTCTTGTTTTAAACTCTCCACTGCTATCGGTTCATACTTAATACCG
TGGTCTGTTGCAACAGTTGTAAATCTCTTTTTCACTGGGTAGCAGACTTG
GATAATAGTACTCTTAGCTGGTTGACTGATATCTGTTTGACAACATAGTT
TGAAACGACTAGCAGTAATAACACCTGCTCTGGCTTGGAACCAAAGACTG
GACTTGGCCTGTTGCTTTGTATGGTTTTCAATTTCAGTTACATCATCTGG
TGAGATTTTAATTGACATGAATGTAATTAGACAGTGTCGTATAAGTTCAT
GATACAACATTTCTTCATATTTtaattgataaaatttgaataatacCCGC
TCAAGCTTTCTGGCAGCTGGTACAAATCTATCATTGTAACCTTCGATTAA
TCGTAAAATTGCACTTTCAGGGTTAGCTTTTGACAAACAGAAGTAAAAGT
TATCTTTATCAGCATCAGTTAGGTTTGGTACCatttttctggttttcacc
gGTGGAAGGACAACATCAGCTTTATCTTTACTATCTCTTTTACgcttttt
ttcatctttgtccTTACTTTTATCGTGAAAGTCAATATCACAAATAAGAG
CAAAATCAACATTGTTAATTTTTGGTGGAAGCCAACCATTTGGGTCTGAG
GTGACAGAGTCCGTAAAATGTCTTTTATAGTAGTCCATAGTAAACATGAG
ATAAAACATAATTGCACCAACGTGTGAACATGTTTCGCCAAGTCCTGCCA
TGCAAGTGCAATGGGCATTGATTATATCTCCAGACTTATAAACTCCAACC
CAAGATTGATTAGGTTTCTTGGTAAACATACTCTGTCCATGTTTGACAAG
TCCATGCACAAGTAAAGTATCATCTTTCAGTTTTTTAACCTTGACTTCAT
CAACTAATCCACTTTTTACATACTTGTAGGCCTCGAGAGACTTGTAGGCT
TTCAAGCTGGTCTTTGTGAAGTAGCTTGGAAAGTttatcaaataaacaaa
gatgTCTGCATACACTATGTCAGGCCAACCTCTGATGTCGTTAGTAAAGt
caaaatcagtgtttttcagagTATATGGGTCCTGTTTAAGATCAAGTTGT
GTTAGCTTTTCTTCATATCTTCTCTTTGCTGGATCCTCTAATTTATAATA
ATACTCAGATCTCACAATGTCTTTGCCTGATAATGatttcattttagatt
ttaaagCAAAACATCACGTTTCATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019610-exon-sc0000332-1491911889:203605..203810 | TCONS_00019610-exon-sc0000332-1491911889:203605..203810 | Clytia hemisphaerica | exon |
| TCONS_00019610-exon-sc0000332-1510915933:203605..203810 | TCONS_00019610-exon-sc0000332-1510915933:203605..203810 | Clytia hemisphaerica | exon |
| TCONS_00019610-exon-sc0000332-1575043694:203605..203810 | TCONS_00019610-exon-sc0000332-1575043694:203605..203810 | Clytia hemisphaerica | exon |
| TCONS_00019610-exon-sc0000332-1491911889:203928..207931 | TCONS_00019610-exon-sc0000332-1491911889:203928..207931 | Clytia hemisphaerica | exon |
| TCONS_00019610-exon-sc0000332-1510915933:203928..207931 | TCONS_00019610-exon-sc0000332-1510915933:203928..207931 | Clytia hemisphaerica | exon |
| TCONS_00019610-exon-sc0000332-1575043694:203928..207931 | TCONS_00019610-exon-sc0000332-1575043694:203928..207931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:203605..207931 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
