Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019622 ID=TCONS_00019622|Name=TCONS_00019622|organism=Clytia hemisphaerica|type=transcript|length=1013bpRun BLAST on NCBI transcript from alignment at sc0000332:8327..17510- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019622 ID=TCONS_00019622|Name=TCONS_00019622|organism=Clytia hemisphaerica|type=transcript|length=9184bp|location=Sequence derived from alignment at sc0000332:8327..17510- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00019622 vs. Swiss-Prot (Human)
Match: PXK (PX domain-containing protein kinase-like protein OS=Homo sapiens GN=PXK PE=1 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 2.303e-91 Identity = 154/331 (46.53%), Postives = 215/331 (64.95%), Query Frame = 2 Query: 23 MSVLEKKGKGK--LDDTVVLKCNITGFVNIDGHTEFKLKVQRGSNPDNSWEVMHRYNDFXXXXXXXXXXXVGIEVPFPPKKAFGNMDSAFLQERRFGLQTFMDLVLSNSLFSQNIAVKRFLDPGNYSDNIDXXXXXXXXXFFRSEPNWELQENMKEIGWRVRKHYFSIKSKDGAAKTKYLLSWVEHGPDXXXXXXXXXXXXXXXXXXXXXPFIYPVTYASCTEKGATIVRQFHNTGSLRDVICKAKPHHPRLKKYGNLRIRIPLEFSNIKRIGRQVLEALKFLKDKNWPYGHLHAGNVVVDGNNCRLLDVENGILGLPTLYRSFIMELKAV 1009 M+ +EK GK LDDTV L I ++ HTE+ ++VQRG + +NSW+++ RY+DF LN L G+ +P PPKK GNMD F+ ER+ GLQ +++++ +N + S VK+FLDP NYS N ++A QQ +MFFRSEP WE+ E +K+IGWR+RK YF +K K+ K + +LSW + GPD L + + L P+IY VT+A+ E A ++R F+ G+L+D+I KAKP P LKKY N + LE IK GRQ+LE LKFL DK +PYGHLHA NV++DG+ CRLLD+EN +LGLP+ YRS+ + + + Sbjct: 1 MAFMEKPPAGKVLLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSLQI--AGLSLPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLDPNNYSANYTEIALQQVSMFFRSEPKWEVVEPLKDIGWRIRKKYFLMKIKN-QPKERLVLSWADLGPDKYLSDKDFQCLIKLLPSCLH-PYIYRVTFATANESSALLIRMFNEKGTLKDLIYKAKPKDPFLKKYCNPKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGDTCRLLDLENSLLGLPSFYRSYFSQFRKI 327 The following BLAST results are available for this feature:
BLAST of TCONS_00019622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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