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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019628 ID=TCONS_00019628|Name=TCONS_00019628|organism=Clytia hemisphaerica|type=transcript|length=1899bpRun BLAST on NCBI protein sequence of TCONS_00019628-protein >TCONS_00019628-protein ID=TCONS_00019628-protein|Name=TCONS_00019628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp MAGFLKNFRKEQSRPLFGKKKFDDKFEKHYKQLELLGKGAFSEVFKVEKMRun BLAST on NCBI transcript from alignment at sc0000332:119142..132810- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019628 ID=TCONS_00019628|Name=TCONS_00019628|organism=Clytia hemisphaerica|type=transcript|length=13669bp|location=Sequence derived from alignment at sc0000332:119142..132810- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000332:119142..132810- >TCONS_00019628 ID=TCONS_00019628|Name=TCONS_00019628|organism=Clytia hemisphaerica|type=CDS|length=10989bp|location=Sequence derived from alignment at sc0000332:119142..132810- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019628 vs. Swiss-Prot (Human)
Match: KCC1D (Calcium/calmodulin-dependent protein kinase type 1D OS=Homo sapiens GN=CAMK1D PE=1 SV=1) HSP 1 Score: 385.185 bits (988), Expect = 1.950e-127 Identity = 178/298 (59.73%), Postives = 235/298 (78.86%), Query Frame = 1
Query: 466 ELLGKGAFSEVFKVEKMSVGKNYAAKFISKKTLNPKEEASLESEIFIMKRVSHPNIVSLVELFDNRNYLYIVMDLVTGGELFDRIVEKGMYTEVDASNLCKQLLEAVNYIHSLGIIHRDLKPENLLYYDSSNDSKIMITDFGLAK-DDDNEIQQTACGTPGYVAPEVLKLQPYGKPVDCWALGVITYILLCGYPPFYSEDDQELYRYIMDADFEYDSPYWDEISKDAKGFVGNLIELDVSKRFDCEKALQHPWISGDAALNKNIHDSVSTQIKKHFNAKSKWKQAINAATAIRRMQQL 1356
E LG GAFSEV E+ + GK +A K I KK L KE +S+E+EI +++++ H NIV+L +++++ N+LY+VM LV+GGELFDRIVEKG YTE DAS L +Q+L+AV Y+H +GI+HRDLKPENLLYY +SKIMI+DFGL+K + ++ TACGTPGYVAPEVL +PY K VDCW++GVI YILLCGYPPFY E+D +L+ I+ A++E+DSPYWD+IS AK F+ NL+E D +KR+ CE+A +HPWI+GD ALNKNIH+SVS QI+K+F AKSKW+QA NA +R M++L
Sbjct: 27 ETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKNF-AKSKWRQAFNATAVVRHMRKL 322 The following BLAST results are available for this feature:
BLAST of TCONS_00019628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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