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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019633 ID=TCONS_00019633|Name=TCONS_00019633|organism=Clytia hemisphaerica|type=transcript|length=2028bp
aaTGCATCCAATCAGAAGATAGGATTTTGAGCCGACGCTTCgactttttg
aacaaattttcgACTTCATCAATTTATCGATGCTCTTAGTTCATCTTGCT
CACATATTTAATGAGTTTCTTCTCAATTTACAgtgatttatttgaaaaaa
cttccactgagaaaatattttgattttgtactGGCAAGGTAAGATTGTTT
TGGTATTCCAAGTTGGCAGATCTTACTGCAACTCACATTTGATATCATTT
CAGCCgtcagaaaatttagttttagtCGCTAACTTGGTTTGAGTCAAACT
TTGTTTTGTAAGGAGAATTTTGAAGAGGGCGCAAGCAAGCTAGCAGAAGT
CCTTCGAAAAGGTGTGGTGACACAAAGACGAACTTTGTCTGGCAATTCCT
TGAGTTTGAATCCTGAACAACGGTGCAATAAAAGGAAATGGCAGCCATAA
GAAAGAAGCTGGTGATTGTTGGTGATGGTGCTTGTGGTAAAACTTGTTTA
TtgattgtattttcaaaggatcAATTTCCAGAAGTCTATGTACCCACTGT
TTTCGAAAATTATGTTGCAGATATTGAAGTAGATGGTAAACAAGTGGAAT
TAGCTTTATGGGATACCGCAGGACAAGAAGATTACGATAGGCTTCGACCA
TTATCATATCCAGATACAGATGTCATTTTAATGTGTTTTTCCATAGACTC
ACCAGACAGTTTAGAAAATATTCCAGAGAAATGGACTCCAGAAGTAAAAC
ACTTTTGTCCTAATGTGCCTATTATTCTTGTTGGTAATAAGAAAGATTTA
CGTAATGATGAAAACACAAAGTGGGAACTCCAAAAGCAAAAACAAGAGCC
AGTCAAGATGGAAGAAGGAGAGGTTATGGCTAACAAGATAAGTGCTTATG
CATATCTTGAATGCTCTGCAAAATCAAAGGAAGGTGTCCGTGAAGTTTTT
GAAACAGCAACACGTGCTGCTCTTCaatcaaagaagaaaaagaagaaggg
tTGTGTTTTGATCTAAATCAAAGGAGCTAAATCTTTATCAAAATGGTTGA
AATGAACGTTGAATGAAACATCAGAAGCTGAATTCAGAAAACTCAAAGTT
GGAGTGTTCCCTGAATAACGATGCTGGTACGaatacaaaatttaaaagac
tTGGATATTAAAAACATTCCATTCCACTGTGACCACACTAAGAACTGTAC
TTTTGAAGAGGGATTTGATGCTCAGCAAGCTTCACATAATATTACTTaac
agtttctttttttgttaataaaGTAGcccaaaacatttttaatttgagTC
GAATTGACTATATTACTATGAATTAAAATCTTAGTTTGCATTTTGACAAC
AAACTTTCAAATAATCATTCATTTATGAGTATAAACCAGCTAACGAGTTA
TCgtgatttttttcctttttaaataCTTACTAAACAATGCCATTTGGTTC
CTCTAGAtgtgtttattttgaaataacttttCTGTGTATGTAGTAATTTT
ATTATAAACaaggacaaaagaaaaaaattatttctggcATCATAATGTCT
GCCATATCTTTAGTGGGTTAATTTACtttgggaaatttttcaatcttctA
CATaagttttagattttgaaaaaaagagccATAGTTTAAAAAGTAATCCA
CACAAAGATGTTCTGGGCTCAATTTTCTTTAGCTTATGTCAATGGATTCT
TGGTTTTCTTTCTCAATTAATTTGGTAGGcaataaaattgttttattctt
ttcaatttccaaGCAGTCCCAGTAAAGGTTTTGCAAATTTATGTATATAT
AAACCGTTAAAAAAGCAGTGCTTATGCTTTTCTGTATACAATATAATAAC
TAAAAATTGTAGACATTTTCCCTgtttttattattgttattgtaCTCGAG
ATAATAGCTAGAAATGTGTtataaaattatgaatttactttaaaatgtat
ttttttagaaaacaagTTTGTTGGTCAACTTGactttaaaaacttaaaaa
ttgtcgctttttgatgatttaaaaattt Run BLAST on NCBI transcript from alignment at sc0000332:218373..222216- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019633 ID=TCONS_00019633|Name=TCONS_00019633|organism=Clytia hemisphaerica|type=transcript|length=3844bp|location=Sequence derived from alignment at sc0000332:218373..222216- (Clytia hemisphaerica)
AATGCATCCAATCAGAAGATAGGATTTTGAGCCGACGCTTCGACTTTTTG
AACAAATTTTCGACTTCATCAATTTATCGATGCTCTTAGTTCATCTTGCT
CACATATTTAATGAGTTTCTTCTCAATTTACAGTGATTTATTTGAAAAAA
CTTCCACTGAGAAAATATTTTGATTTTGTACTGGCAAGGTAAGATTGTTT
TGGTATTCCAAGTTGGCAGATCTTACTGCAACTCACATTTGATATCATTT
CAGCCGTCAGAAAATTTAGTTTTAGTCGCTAACTTGGTTTGAGTCAAACT
TTGTTTTGTAAGGAGAATTTTGAAGAGGGCGCAAGCAAGCTAGCAGAAGT
CCTTCGAAAAGGTGTGGTGACACAAAGACGAACTTTGTCTGGCAATTCCT
TGAGTTTGAATCCTGAACAACGGTGCAATAAAAGGTGAGTTTTCATTATC
AGTTAGGGCATCACTATCAGTGTGTTTATGCCCTCATCCAAATGTCAATC
TTTGTTCGTAGTAATCCTTCCCTGTAAAATTTGAGCAGGTCAGTGATGAG
TTTATAGTTGGTCAGAGGATAAATTTGTCTGATTGTTGATGCTGTGCTGT
GGCAAGAATGACCCAAAATAAAATTTATTCCTGAACATCTGAAACAATCC
ACTCTTGTCTTGATTTCACCTTCCTAACTGTCTTCAACCCCCAAAACACA
TCTGTGTAGTGGTTTCACACTGGTTTTTTTGTTGTATTGTTGTTCGCCCC
GGTGTACTTTTGTTTGCAACAGTCAGGGAAAACCCTCAATTGCAGTAGTT
TTCATTTGTGGTTGTCCTATAAAAGCTTATAAACGGCTACATACAGTGCT
GGTCAACAAAGAAGATAAAAAAAAATCGTATGAGAAGAAAGCTTTTCTTT
ATTAAAAGAATCTGATCAAGGAATTTAATTATTTTGAAAATATTTTATCT
GTGCGATAAAAAGATATGATCAATTAATATGGTCACATCCCTCGTCTAAT
TCCGACACCTTTATTCAGAAAAAGGAATAATATGAAAGCTTGAATCACTG
ATTGAAAAAGGATTATTCCTCTCTGACCACTTTTAAGTGGCTTAAAAGCA
AAGAAAAACAGTTTCAACCTTTCTACAAATTTCAGCTGATAAAAAGGGTG
TCGGAATTAGAGGACGAGTGTCGACATTAGACCAAGTTACAATATCGATT
CTTCCACAACTAACGTCAAATTGCATTGACGCTAATTTGAAAACCCCGCA
CCCCCACCTCTTAACGTCAAAGTTGAAAATTTATCAAAGAAACTCTAAAC
TTTCTCCTTCACTTTCATCGTTGTTACGTCAGCCATCTATAATTTCACTA
TGGCTTGCTCAGTTTACATTTAAAAAATAATGGAGATAATTTCTAAACTT
TTTTCGCAAGGTTGCGGGAATTAATTATCTCCTTAATCATAATCAACAGA
ATAGTGGCATTTTACAAAAATAACCGGCCATTGGCAAAATCAAGGGCTGC
GCAGACCGTCTAAACAAAAGGAGCACAAGACATTAACATCAGGCCTTTTG
TTTTGGTTTAAATTGTTTCTTAAATATACTGCAATTGTGGTATATGTAAA
AGTGGCGTTTAAACCGCAATTGCAGGGAAAAATTACTACCTTAAGTGGAT
TAAATTTCGCGTGGATTAATTTTCGCGGTTTTCGCGATTTTTGGCCGTTT
TCGCGAAATTTTGTCCACTCGAAATATTTAAAATCTAAAAATTAGCCAAA
ACCTCTTGGAAAATGAAAGAAATCGGGTGAAAAAGAGGCTGATTCGCAAA
ATTTTGTCCACGCAAAATTTTTAGATTCTTGATTCGCGAAAAAAAGTCCA
CGCAAAAATTTATCCACTTAAGGTACCACAATTGAGGGTTTTCCCTAAAT
GTGCAACTGTGCCTTATGAGAATATCATTTGTTACCTGTGTGGTAAGATT
GAATATGGATGCCTCGCCCCTCTCGGAAATTAATAAACCAACAGTTTACT
GTTAAGTTGCACTTCCACATCAAGTAGCTTCTGCATCTATGATTAGGAGA
TCATGGCCGCAGAACCATGTGATACACTGAAAATGTATGGAAAGTCATTT
TTAAACAAAACCCACCTTTAAACCTCATTTATTCCACTCACTTCAAATCT
TCCTAGCATAAAGAAATGGGGTTTAAAGTAACTAAAAATCCCTTGAGTAA
GATTTTTTTGTCAGAATTAGCTTTTTAAAGCAGGCTTTTATTATCTTTAG
GAAATGGCAGCCATAAGAAAGAAGCTGGTGATTGTTGGTGATGGTGCTTG
TGGTAAAACTTGTTTATTGATTGTATTTTCAAAGGATCAATTTCCAGAAG
TCTATGTACCCACTGTTTTCGAAAATTATGTTGCAGATATTGAAGTAGAT
GGTAAACAAGTGGAATTAGCTTTATGGGATACCGCAGGACAAGAAGATTA
CGATAGGCTTCGACCATTATCATATCCAGATACAGATGTCATTTTAATGT
GTTTTTCCATAGACTCACCAGACAGTTTAGAAAATATTCCAGAGAAATGG
ACTCCAGAAGTAAAACACTTTTGTCCTAATGTGCCTATTATTCTTGTTGG
TAATAAGAAAGATTTACGTAATGATGAAAACACAAAGTGGGAACTCCAAA
AGCAAAAACAAGAGCCAGTCAAGATGGAAGAAGGAGAGGTTATGGCTAAC
AAGATAAGTGCTTATGCATATCTTGAATGCTCTGCAAAATCAAAGGAAGG
TGTCCGTGAAGTTTTTGAAACAGCAACACGTGCTGCTCTTCAATCAAAGA
AGAAAAAGAAGAAGGGTTGTGTTTTGATCTAAATCAAAGGAGCTAAATCT
TTATCAAAATGGTTGAAATGAACGTTGAATGAAACATCAGAAGCTGAATT
CAGAAAACTCAAAGTTGGAGTGTTCCCTGAATAACGATGCTGGTACGAAT
ACAAAATTTAAAAGACTTGGATATTAAAAACATTCCATTCCACTGTGACC
ACACTAAGAACTGTACTTTTGAAGAGGGATTTGATGCTCAGCAAGCTTCA
CATAATATTACTTAACAGTTTCTTTTTTTGTTAATAAAGTAGCCCAAAAC
ATTTTTAATTTGAGTCGAATTGACTATATTACTATGAATTAAAATCTTAG
TTTGCATTTTGACAACAAACTTTCAAATAATCATTCATTTATGAGTATAA
ACCAGCTAACGAGTTATCGTGATTTTTTTCCTTTTTAAATACTTACTAAA
CAATGCCATTTGGTTCCTCTAGATGTGTTTATTTTGAAATAACTTTTCTG
TGTATGTAGTAATTTTATTATAAACAAGGACAAAAGAAAAAAATTATTTC
TGGCATCATAATGTCTGCCATATCTTTAGTGGGTTAATTTACTTTGGGAA
ATTTTTCAATCTTCTACATAAGTTTTAGATTTTGAAAAAAAGAGCCATAG
TTTAAAAAGTAATCCACACAAAGATGTTCTGGGCTCAATTTTCTTTAGCT
TATGTCAATGGATTCTTGGTTTTCTTTCTCAATTAATTTGGTAGGCAATA
AAATTGTTTTATTCTTTTCAATTTCCAAGCAGTCCCAGTAAAGGTTTTGC
AAATTTATGTATATATAAACCGTTAAAAAAGCAGTGCTTATGCTTTTCTG
TATACAATATAATAACTAAAAATTGTAGACATTTTCCCTGTTTTTATTAT
TGTTATTGTACTCGAGATAATAGCTAGAAATGTGTTATAAAATTATGAAT
TTACTTTAAAATGTATTTTTTTAGAAAACAAGTTTGTTGGTCAACTTGAC
TTTAAAAACTTAAAAATTGTCGCTTTTTGATGATTTAAAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019633-exon-sc0000332-1575043694:221783..222216 | TCONS_00019633-exon-sc0000332-1575043694:221783..222216 | Clytia hemisphaerica | exon |
| TCONS_00019633-exon-sc0000332-1575043694:218373..219966 | TCONS_00019633-exon-sc0000332-1575043694:218373..219966 | Clytia hemisphaerica | exon |
| TCONS_00019633-exon-sc0000332-1510915933:221783..222216 | TCONS_00019633-exon-sc0000332-1510915933:221783..222216 | Clytia hemisphaerica | exon |
| TCONS_00019633-exon-sc0000332-1510915933:218373..219966 | TCONS_00019633-exon-sc0000332-1510915933:218373..219966 | Clytia hemisphaerica | exon |
| TCONS_00019633-exon-sc0000332-1491911889:221783..222216 | TCONS_00019633-exon-sc0000332-1491911889:221783..222216 | Clytia hemisphaerica | exon |
| TCONS_00019633-exon-sc0000332-1491911889:218373..219966 | TCONS_00019633-exon-sc0000332-1491911889:218373..219966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:218373..222216 - |
Blast
BLAST of TCONS_00019633 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1) HSP 1 Score: 343.969 bits (881), Expect = 7.734e-114 Identity = 169/193 (87.56%), Postives = 182/193 (94.30%), Query Frame = 3
Query: 438 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDENTKWELQKQKQEPVKMEEGEVMANKISAYAYLECSAKSKEGVREVFETATRAALQSXX-XXXXGCVLI 1013
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE+T+ EL K KQEPVK EEG MAN+I A+ Y+ECSAK+K+GVREVFE ATRAALQ+++ KKK GC+++
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193
The following BLAST results are available for this feature:
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