TCONS_00019663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019663
Unique NameTCONS_00019663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019663 ID=TCONS_00019663|Name=TCONS_00019663|organism=Clytia hemisphaerica|type=transcript|length=455bp
caatgctTTTGTATGATACCTCATGTGGAGGATTATCAATGGATATCACG
AATCTATTGAATACTCGTTTATGGTTGCCGGACATACCAAGTTTAGTTGC
GACAGatgcTTCGGCAGCTTCAAAAAGCAACTGCGAAAAACACGTGTTTC
ATCGCTATACGAAATCGCTGACGTGTGCAGCAAGTCAAAGTGCAATTTTC
CCGTTCTTGTTGGCAACCACAACAAGGAAATCAATGTTGTCACATACGAT
TAGACAACATATTTTGAGAAGGACTTGAACTTTCAAGCTATCAAGGACAT
TTTACAATATCACCATTTTCGTATGACTAAGGAGGAACCTGGTATTGTAA
CCTGCTTGAAATCGCTTGATGATGAACCAGTTAAAGTATCGATTTTCCAT
AAACGTAATCCTCCGAAAGTGACATCTGAGCTACCAACAATTGTAACGCC
CAAAG
Run BLAST on NCBI

transcript from alignment at sc0000333:336585..337423+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019663 ID=TCONS_00019663|Name=TCONS_00019663|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at sc0000333:336585..337423+ (Clytia hemisphaerica)
caatgctTTTGTATGATACCTCATGTGGAGGATTATCAATGGATATCACG
AATCTATTGAATACTCGTTTATGGTTGCCGGACATACCAAGTTTAGTTGC
GACAGGTACAGTAgtttatttaaaggttttatttttacataagtgttctt
gtcctctttctgaccaatcttgcgtCAATCtttgtgtcaatccaatgtga
attaagattgatgagtaaacaaacaatatcactcttgttaaaaaaaacaa
cctttaaagTACTAAAAACTAACGGAGCCgatcaaaatcactttaaaaat
TGTCATTATCGAATCATCCTAATAATGCTAAAGTTTCCTTAGGTtaacaa
taaaaattatacACATGACTTTTTCTGCAAATCTTAGCTTAACAAATTAT
AATACAAGTGGGCTTCCataaataatattaaaaaaacatttccagTTTTT
TGTTACACAATATTTAATAactgtcaaattttattttagatgcTTCGGCA
GCTTCAAAAAGCAACTGCGAAAAACACGTGTTTCATCGCTATACGAAATC
GCTGACGTGTGCAGCAAGTCAAAGTGCAATTTTCCCGTTCTTGTTGGCAA
CCACAACAAGGAAATCAATGTTGTCACATACGATTAGACAACATATTTTG
AGAAGGACTTGAACTTTCAAGCTATCAAGGACATTTTACAATATCACCAT
TTTCGTATGACTAAGGAGGAACCTGGTATTGTAACCTGCTTGAAATCGCT
TGATGATGAACCAGTTAAAGTATCGATTTTCCATAAACGTAATCCTCCGA
AAGTGACATCTGAGCTACCAACAATTGTAACGCCCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011070XLOC_011070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019663-exon-sc0000333-1491911889:336585..336689TCONS_00019663-exon-sc0000333-1491911889:336585..336689Clytia hemisphaericaexon
TCONS_00019663-exon-sc0000333-1510915933:336585..336689TCONS_00019663-exon-sc0000333-1510915933:336585..336689Clytia hemisphaericaexon
TCONS_00019663-exon-sc0000333-1575043694:336585..336689TCONS_00019663-exon-sc0000333-1575043694:336585..336689Clytia hemisphaericaexon
TCONS_00019663-exon-sc0000333-1491911889:337074..337423TCONS_00019663-exon-sc0000333-1491911889:337074..337423Clytia hemisphaericaexon
TCONS_00019663-exon-sc0000333-1510915933:337074..337423TCONS_00019663-exon-sc0000333-1510915933:337074..337423Clytia hemisphaericaexon
TCONS_00019663-exon-sc0000333-1575043694:337074..337423TCONS_00019663-exon-sc0000333-1575043694:337074..337423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:336585..337423 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.505367	0.62918	1.06702	1.04618	0	0.797756	1.52712	1.25331	1.3078	0.428511	0.647877	0	0.571989	0.480914	0	0	0.296571	1.16601	0.00598924	0.957521	0	0.266086	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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