TCONS_00019703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019703
Unique NameTCONS_00019703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019703 ID=TCONS_00019703|Name=TCONS_00019703|organism=Clytia hemisphaerica|type=transcript|length=778bp
aataagtttttttttgcatctCTTTTCAGATTCGCATTGTTAGACCACCC
AATTATTTCATGGCCATCACTATTGGTGTCTTGCTTGCTGGTATTGGAGC
TTTGCTTTACGTCAAAAGAAAAAGCATTGAAATTATCTACAATAAAGACT
ACTGGGGAATTTTATGTTTGACAATAGCCTTTATGATGATGAGTGGCCAA
ATGTGGAACCATATCAGAGGTCCTCCATACGCACACAGAAACCCACAGAC
TGGTGAAATTAATTATATCCATGGAAGCAGTGATGGTCAATTGATCGCTG
AAACTTACATCGTCTTTCTTTTGTATGCATGCGTCACTGTAGGATTCATT
ATGTTGAATGAGCGTGCTCAGGAACAAACTACTCTTAAGAAACGTCGTCT
TTTTACATTGATTGGAACAGTCATGGTTGGTGTATTTTTCAGTTTGATTC
TCTCTGTTTTCAGAAGTAAATACCATGGCTACCCTTACAGcttcCTTTTC
AAATGAAGAAAATCGAACAATTTGAGAAGAAAAGTTTGTTCAAACTAGCT
GTATACATTTTGTCAAATAGATACATCAACTTCAATTTAGGggttttgaa
atttctaatAATTATTATGTACTAAGGAAACTTTTTTAGATTAGaattta
aaattgtaaaatttctttcgaaaagaaaagaaatcctTCTTCATTGTTTA
AATTCATCATAgtcaataaaatagattttttaaagcacttGCGGCGTaat
caaaagctttttctttTAATGGTATTAT
Run BLAST on NCBI

transcript from alignment at sc0000335:6144..7925+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019703 ID=TCONS_00019703|Name=TCONS_00019703|organism=Clytia hemisphaerica|type=transcript|length=1782bp|location=Sequence derived from alignment at sc0000335:6144..7925+ (Clytia hemisphaerica)
aataagtttttttttgcatctCTTTTCAGATTCGCATTGTTAGACCACCC
AATTATTTCATGGCCATCACTATTGGTGTCTTGCTTGCTGGTATTGGAGC
TTTGCTTTACGTCAAAAGAAAAAGCATTGAAATTATCTACAATAAAGACT
ACTGGGGAATTTTATGTTTGGTGAGGCTAATATCTTCGGTCTGATCTGAT
TCTGCAACAAAGTCAAGTTTACCATTTCAATCAGTTGCAAGGTTTATCTA
TATATCTATTATCTAGAGTAATTAAtgtaatttcttcctttattcGAGCT
ACAATCCTGAATTTATTTCCATTTTGTTTTCCCTTCACAGACAATAGCCT
TTATGATGATGAGTGGCCAAATGTGGAACCATATCAGAGGTCCTCCATAC
GCACACAGAAACCCACAGACTGGTGAAATTGTATGTTATTTCTCTTCTTC
AAATTTAGTTTAGCTCAAATCAAATCATTTTGTTAACGCTTGccgtgaaa
aaaaataaaacgacGGAAATGTTATCATAGTTCATAAAACTTATGAGTAG
ATTACCCAAGTTATAACTAAACTTTGTCAAGGGTTTCGAGCATCTTGTTA
ACCATCAAGCCCAAGAGCATTTTTTGTTTCTACCAATTGTTGTAATTATT
TAATTCTTTCTCTTTTCAGAATTATATCCATGGAAGCAGTGATGGTCAAT
TGATCGCTGAAACTTACATCGTCTTTCTTTTGTGTATCCTTTTCCACTCA
CTTTTTAAGTtaggaattttattttcttacttGCTTTTACGCCTCATTCA
CCtccaaattcaaaataattccaaaaagaataccaaggcaaattttgttt
gtgtaatttagatttttcatctGTCTTGTTTTGTTAAACCCTTGTTTCAG
TGATCCGGTGAGATCTTCCATAAATTCTTGTCTCAGTGAACCGTTGGACA
TTCCCATACACCccttcacccctgtctcagtggcCGGTGAAATTCAGAAA
GTATTAAGCATTAAAGTCATTTGTCATCTTTGTCCTTAACTTTACTTACA
TAATATAGATGCATGCGTCACTGTAGGATTCNGTCATTTGTCATCTTTGT
CCTTAACTTTACTTACATAATATAGATGCATGCGTCACTGTAGGATTCAT
TATGTTGAATGAGCGTGCTCAGGAACAAACTACTCTTAAGAAACGTCGTC
TTTTTACATTGATTGGAACAGTCATGGTTGGTGTATTTTTCAGTTTGATT
CTCTCTGTTTTCAGAAGTAAATACCATGGCTACCCTTACAGGTATGTTGA
ATTTCCACATCTTCTTCTCATTTCTCATAACTCATCTATTAACTCTTGGC
CCCTATTTAATGATTGCGGTTGACAATAAGGATTGTTCATTACATGCAAA
ATGATTATTAGAATATCGATTTGTTCGTCGCAGTTTTCTCTAAAATTCTC
TTAAAAAAGGCTCAAAACTGAaaatcttcttttctttttttcagcttcCT
TTTCAAATGAAGAAAATCGAACAATTTGAGAAGAAAAGTTTGTTCAAACT
AGCTGTATACATTTTGTCAAATAGATACATCAACTTCAATTTAGGggttt
tgaaatttctaatAATTATTATGTACTAAGGAAACTTTTTTAGATTAGaa
tttaaaattgtaaaatttctttcgaaaagaaaagaaatcctTCTTCATTG
TTTAAATTCATCATAgtcaataaaatagattttttaaagcacttGCGGCG
TaatcaaaagctttttctttTAATGGTATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011093XLOC_011093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019703-exon-sc0000335-1491911889:6144..6313TCONS_00019703-exon-sc0000335-1491911889:6144..6313Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1510915933:6144..6313TCONS_00019703-exon-sc0000335-1510915933:6144..6313Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1575043694:6144..6313TCONS_00019703-exon-sc0000335-1575043694:6144..6313Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1491911889:6484..6573TCONS_00019703-exon-sc0000335-1491911889:6484..6573Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1510915933:6484..6573TCONS_00019703-exon-sc0000335-1510915933:6484..6573Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1575043694:6484..6573TCONS_00019703-exon-sc0000335-1575043694:6484..6573Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1491911889:6813..6876TCONS_00019703-exon-sc0000335-1491911889:6813..6876Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1510915933:6813..6876TCONS_00019703-exon-sc0000335-1510915933:6813..6876Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1575043694:6813..6876TCONS_00019703-exon-sc0000335-1575043694:6813..6876Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1491911889:7269..7434TCONS_00019703-exon-sc0000335-1491911889:7269..7434Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1510915933:7269..7434TCONS_00019703-exon-sc0000335-1510915933:7269..7434Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1575043694:7269..7434TCONS_00019703-exon-sc0000335-1575043694:7269..7434Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1491911889:7638..7925TCONS_00019703-exon-sc0000335-1491911889:7638..7925Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1510915933:7638..7925TCONS_00019703-exon-sc0000335-1510915933:7638..7925Clytia hemisphaericaexon
TCONS_00019703-exon-sc0000335-1575043694:7638..7925TCONS_00019703-exon-sc0000335-1575043694:7638..7925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:6144..7925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
163.447	176.622	67.1542	49.8753	35.756	24.7943	74.4913	74.8182	74.0782	62.996	71.7269	73.3401	62.7403	62.0323	62.0514	72.9215	47.4293	62.6475	27.1521	30.4687	67.1433	63.9674	91.282	75.2013	27.9704	33.7398	70.5345	57.402	91.3473	70.036
Blast
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BLAST of TCONS_00019703 vs. Swiss-Prot (Human)
Match: MAGT1 (Magnesium transporter protein 1 OS=Homo sapiens GN=MAGT1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.367e-49
Identity = 83/157 (52.87%), Postives = 110/157 (70.06%), Query Frame = 3 
Query:   27 QIRIVRPPNYFMXXXXXXXXXXXXXXXYVKRKSIEIIYNKDYWGILCLTIAFMMMSGQMWNHIRGPPYAHRNPQTGEINYIHGSSDGQLIAETYIVFLLYACVTVGFIMLNERAQEQTTLKKRRLFTLIGTVMVGVFFSLILSVFRSKYHGYPYSFL 497
             IR++RPPNY   + +G+LLA IG L+Y++R ++E ++NK  W    L     M SGQMWNHIRGPPYAH+NP TG +NYIHGSS  Q +AET+IV L    VT+G ++L E A     + KR++  + G  +V +FFS +LS+FRSKYHGYPYSFL
Sbjct:  177 NIRVIRPPNYAGPLMLGLLLAVIGGLVYLRRSNMEFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPPYAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVTLGMVLLCEAATSDMDIGKRKIMCVAGIGLVVLFFSWMLSIFRSKYHGYPYSFL 333
The following BLAST results are available for this feature:
BLAST of TCONS_00019703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAGT15.367e-4952.87Magnesium transporter protein 1 OS=Homo sapiens GN... [more]
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