TCONS_00019800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019800
Unique NameTCONS_00019800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2079

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019800 ID=TCONS_00019800|Name=TCONS_00019800|organism=Clytia hemisphaerica|type=transcript|length=2079bp
GTTCAAAGTGATGTCATCTCTGGAACAGATCTCtgtattattttcatctc
tttttcCTTTCAGTGACTAAATGAACAAagaaaaaccaaataaaaaacaa
gaacATAGAAAATGTCACACGACGAAGATGGACTCCCTTTATTGATACAC
GTGCGAGAAAACAATGACAAACTCTTTACCGCCTTCCTGGCGTCAGTCAT
CGCGTCTCTGGCTTCATTGAACTTTGGTTACGCTCTTGGCTACTCTTCAC
CAACGCAAAAACAAATGTCTCCAGACCCGCTAGATAAAGATCAATTCTCA
TGGTTCAGCTCAATTGTTGCACTGGGAGCCATAGTGGGAAGTTGGATTGG
CGCTTATATGGTGGATAAGTTAGGAAGGAAGATGTCCATCATGTTGAGCG
CCTTCTTCTACGTGCCAGGCTGGTGTTTGATAGCGTATGGTGAAAGTGTG
GGTATGTTGTATGTGGGTCGCATCATCAGTGGTATGGGTGTCGGTATATC
TGCTCTTTCTGTCCCCATGTACATTTCGGAGATTGCATCATCACGATACA
GGGGTGGATTGAGTTGCATCAACCAGTTGTTCATCACATTTGGTGACGTG
GTGGTGTACTCCATCGGTGCCATCCACGCAGTAAAGTGGCAGTGGTTGGC
TATCATCCCCGTCATCATTGCAACCATAGCTATCCTACTCATGTCCTTCA
TGCCAGAAACACCTGTCTGGCTGCTTGCCAATCATAAGAAAGGTGAAGCA
CTTCGAACGCTGGTCTGGTTGAGAGGTTCTTCTTACGATTGTGCATCTGA
ATTGAACGATCTTCAACTCAACCTTGaaacacaagaaaaaatatCGTTGA
GAGCATTTTTGAGTCCAGTTTTGTATCGACCCTTGATCATTGGATGTATG
ATGATGGTTTTCCAGCAGATGGTTGGTATCAATGCCATTCTCTTCTTCTG
TGATAAAGTCTTCACTCAAGCCGGTATCTCCTGGGATGAATATGCATCCA
TTGCTGCTATCTGTGTCCTTTTCGCCTTCACCGTCGTCTCCTGCTTGACA
GTGGATCGTCTTGGAAGACGTATACTTCTGTTGGTTGGTAGTGTCGTTAT
GTTCGTTTGTATGTTTTTGTTGGGTGTGTATTATGACTTGGCCGAAAACC
CTAAAAATACCCTCAGAATTTTTGGTCATAAATCTCACACCATCCCTGTA
TCGCACATTTCGTGGTTGGCCTTACTCTCTGTTTTCCTGTATCTTGCATT
GTTTGCCATCGGTTGGGGCCCGTTACCATGGGTACTGATGGGTGAATTGT
TTCCACCACGTGCTCGTAGTCAAGCAAGCAGTATGGTAACCATGGTGAAC
CTCATTTTCACTTTTATCGTTGGAAAAACTTTTGCTTCTTTCACTGATGT
ATTTCAACCACAAGGCACCTTTTGGTTTTATTCAGGATTCTGTATTTTAA
GCTTCCTGTACACCATGTTTTTCGTACCGGAAACGAAAGGCAAAACTTTG
ATGGAAATCGAACGTATATTTGCCACATCAACACAATAGTGAGTTAACGG
TTAAGATGTACGTAAAATGTGGTAGGCTATTGCAAAGTTCCAccctagcc
tattacattttctTTCTTGATTAAACCAGTAAACTTGACATCGATAGTAG
ATTgatatatttgtattttttagtaCTCAATGCATTCATTTTATAACGCG
AgtaaatcaaattttcacttttccaCATACGGTGATTTTTCTGTCTTAAT
GCAATCGTTAAAATAGCTATTTTGAAGTTGTCGCACTAATGGTGCGATCA
TAAAGGTAATAAGAATAGATGGAGAGTcgatgccttttgttctattctga
ctTATCagcggaagcaaacagctgtttggttgcttgaGATACActctttt
atataagaacatccgaaatttttgaagccttgggatgtctttatttttgc
ctttttttgtccattttttaagaaatcaggtgtttttaGGCTTGGGGATA
CAAGAAGTTTTTcatcgcgttggtgcaatgcaacgtGCTCCATCctacca
acacaagaaaaaaagtgcgtgtctcatgg
Run BLAST on NCBI

protein sequence of TCONS_00019800-protein

>TCONS_00019800-protein ID=TCONS_00019800-protein|Name=TCONS_00019800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MSHDEDGLPLLIHVRENNDKLFTAFLASVIASLASLNFGYALGYSSPTQK
QMSPDPLDKDQFSWFSSIVALGAIVGSWIGAYMVDKLGRKMSIMLSAFFY
VPGWCLIAYGESVGMLYVGRIISGMGVGISALSVPMYISEIASSRYRGGL
SCINQLFITFGDVVVYSIGAIHAVKWQWLAIIPVIIATIAILLMSFMPET
PVWLLANHKKGEALRTLVWLRGSSYDCASELNDLQLNLETQEKISLRAFL
SPVLYRPLIIGCMMMVFQQMVGINAILFFCDKVFTQAGISWDEYASIAAI
CVLFAFTVVSCLTVDRLGRRILLLVGSVVMFVCMFLLGVYYDLAENPKNT
LRIFGHKSHTIPVSHISWLALLSVFLYLALFAIGWGPLPWVLMGELFPPR
ARSQASSMVTMVNLIFTFIVGKTFASFTDVFQPQGTFWFYSGFCILSFLY
TMFFVPETKGKTLMEIERIFATSTQ
Run BLAST on NCBI

transcript from alignment at sc0000336:104983..107454-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019800 ID=TCONS_00019800|Name=TCONS_00019800|organism=Clytia hemisphaerica|type=transcript|length=2472bp|location=Sequence derived from alignment at sc0000336:104983..107454- (Clytia hemisphaerica)
GTTCAAAGTGATGTCATCTCTGGAACAGATCTCTGTATTATTTTCATCTC
TTTTTCCTTTCAGTGACTAAATGAACAAAGAAAAACCAAATAAAAAACAA
GAACATAGAAAATGTCACACGACGAAGATGGACTCCCTTTATTGATACAC
GTGCGAGAAAACAATGACAAACTCTTTACCGCCTTCCTGGCGTCAGTCAT
CGCGTCTCTGGCTTCATTGAACTTTGGTTACGCTCTTGGCTACTCTTCAC
CAACGCAAAAACAAATGTCTCCAGACCCGCTAGATAAAGATCAATTCTCA
TGGTTCAGCGTAAATCTTTTTCGACTTAAATCAATGATAGTATTTTCTCA
TAGCATTCACTTTTCGAATCAATATTTCTGTTTAAAGCTGCAAAGGAAGG
AATCATAGCATTGACATAATTTTTTCTTTCTCCTTTCAGTCAATTGTTGC
ACTGGGAGCCATAGTGGGAAGTTGGATTGGCGCTTATATGGTGGATAAGT
TAGGAAGGAAGATGTCCATCATGTTGAGCGCCTTCTTCTACGTGCCAGGC
TGGTGTTTGATAGCGTATGGTGAAAGTGTGGGTATGTTGTATGTGGGTCG
CATCATCAGTGGTATGGGTGTCGGTATATCTGCTCTTTCTGTCCCCGTAA
GTAACTTGTCTGAACTTTTCTTAATTTTCAAATATCATCTCACAAACTGA
AGGATCTCATACATTCCCAGTACTAATTAAATTGCCTGATTTTAAACTTT
AATTTTCGTACAGATGTACATTTCGGAGATTGCATCATCACGATACAGGG
GTGGATTGAGTTGCATCAACCAGTTGTTCATCACATTTGGTGACGTGGTG
GTGTACTCCATCGGTGCCATCCACGCAGTAAAGTGGCAGTGGTTGGCTAT
CATCCCCGTCATCATTGCAACCATAGCTATCCTACTCATGTCCTTCATGC
CAGAAACACCTGTCTGGCTGCTTGCCAATCATAAGAAAGGTGAAGCACTT
CGAACGCTGGTCTGGTTGAGAGGTTCTTCTTACGATTGTGCATCTGAATT
GAACGATCTTCAACTCAACCTTGGTAAGAAATTCCTTCTTCATCCTTACC
AATGTCTTTTCGTCAATCAATAAAGAATAATATTGAAAGCATAGCCATGT
AACATTTTCGCCTTCCAAGACGTTGAAAATAAGTCCAAAACTCATCTATT
CATTCTCTTCTCGTTGTAGAAACACAAGAAAAAATATCGTTGAGAGCATT
TTTGAGTCCAGTTTTGTATCGACCCTTGATCATTGGATGTATGATGATGG
TTTTCCAGCAGATGGTTGGTATCAATGCCATTCTCTTCTTCTGTGATAAA
GTCTTCACTCAAGCCGGTATCTCCTGGGATGAATATGCATCCATTGCTGC
TATCTGTGTCCTTTTCGCCTTCACCGTCGTCTCCTGCTTGACAGTGGATC
GTCTTGGAAGACGTATACTTCTGTTGGTTGGTAGTGTCGTTATGTTCGTT
TGTATGTTTTTGTTGGGTGTGTATTATGACTTGGCCGAAAACCCTAAAAA
TACCCTCAGAATTTTTGGTCATAAATCTCACACCATCCCTGTATCGCACA
TTTCGTGGTTGGCCTTACTCTCTGTTTTCCTGTATCTTGCATTGTTTGCC
ATCGGTTGGGGCCCGTTACCATGGGTACTGATGGGTGAATTGTTTCCACC
ACGTGCTCGTAGTCAAGCAAGCAGTATGGTAACCATGGTGAACCTCATTT
TCACTTTTATCGTTGGAAAAACTTTTGCTTCTTTCACTGATGTATTTCAA
CCACAAGGCACCTTTTGGTTTTATTCAGGATTCTGTATTTTAAGCTTCCT
GTACACCATGTTTTTCGTACCGGAAACGAAAGGCAAAACTTTGATGGAAA
TCGAACGTATATTTGCCACATCAACACAATAGTGAGTTAACGGTTAAGAT
GTACGTAAAATGTGGTAGGCTATTGCAAAGTTCCACCCTAGCCTATTACA
TTTTCTTTCTTGATTAAACCAGTAAACTTGACATCGATAGTAGATTGATA
TATTTGTATTTTTTAGTACTCAATGCATTCATTTTATAACGCGAGTAAAT
CAAATTTTCACTTTTCCACATACGGTGATTTTTCTGTCTTAATGCAATCG
TTAAAATAGCTATTTTGAAGTTGTCGCACTAATGGTGCGATCATAAAGGT
AATAAGAATAGATGGAGAGTCGATGCCTTTTGTTCTATTCTGACTTATCA
GCGGAAGCAAACAGCTGTTTGGTTGCTTGAGATACACTCTTTTATATAAG
AACATCCGAAATTTTTGAAGCCTTGGGATGTCTTTATTTTTGCCTTTTTT
TGTCCATTTTTTAAGAAATCAGGTGTTTTTAGGCTTGGGGATACAAGAAG
TTTTTCATCGCGTTGGTGCAATGCAACGTGCTCCATCCTACCAACACAAG
AAAAAAAGTGCGTGTCTCATGG

Coding sequence (CDS) from alignment at sc0000336:104983..107454-

>TCONS_00019800 ID=TCONS_00019800|Name=TCONS_00019800|organism=Clytia hemisphaerica|type=CDS|length=5712bp|location=Sequence derived from alignment at sc0000336:104983..107454- (Clytia hemisphaerica)
AAACACAAGAAAAAATATCGTTGAGAGCATTTTTGAGTCCAGTTTTGTAT
CGACCCTTGATCATTGGATGTATGATGATGGTTTTCCAGCAGATGGTTGG
TATCAATGCCATTCTCTTCTTCTGTGATAAAGTCTTCACTCAAGCCGGTA
TCTCCTGGGATGAATATGCATCCATTGCTGCTATCTGTGTCCTTTTCGCC
TTCACCGTCGTCTCCTGCTTGACAGTGGATCGTCTTGGAAGACGTATACT
TCTGTTGGTTGGTAGTGTCGTTATGTTCGTTTGTATGTTTTTGTTGGGTG
TGTATTATGACTTGGCCGAAAACCCTAAAAATACCCTCAGAATTTTTGGT
CATAAATCTCACACCATCCCTGTATCGCACATTTCGTGGTTGGCCTTACT
CTCTGTTTTCCTGTATCTTGCATTGTTTGCCATCGGTTGGGGCCCGTTAC
CATGGGTACTGATGGGTGAATTGTTTCCACCACGTGCTCGTAGTCAAGCA
AGCAGTATGGTAACCATGGTGAACCTCATTTTCACTTTTATCGTTGGAAA
AACTTTTGCTTCTTTCACTGATGTATTTCAACCACAAGGCACCTTTTGGT
TTTATTCAGGATTCTGTATTTTAAGCTTCCTGTACACCATGTTTTTCGTA
CCGGAAACGAAAGGCAAAACTTTGATGGAAATCGAACGTATATTTGCCAC
ATCAACACAATAGATGTACATTTCGGAGATTGCATCATCACGATACAGGG
GTGGATTGAGTTGCATCAACCAGTTGTTCATCACATTTGGTGACGTGGTG
GTGTACTCCATCGGTGCCATCCACGCAGTAAAGTGGCAGTGGTTGGCTAT
CATCCCCGTCATCATTGCAACCATAGCTATCCTACTCATGTCCTTCATGC
CAGAAACACCTGTCTGGCTGCTTGCCAATCATAAGAAAGGTGAAGCACTT
CGAACGCTGGTCTGGTTGAGAGGTTCTTCTTACGATTGTGCATCTGAATT
GAACGATCTTCAACTCAACCTTGTCAATTGTTGCACTGGGAGCCATAGTG
GGAAGTTGGATTGGCGCTTATATGGTGGATAAGTTAGGAAGGAAGATGTC
CATCATGTTGAGCGCCTTCTTCTACGTGCCAGGCTGGTGTTTGATAGCGT
ATGGTGAAAGTGTGGGTATGTTGTATGTGGGTCGCATCATCAGTGGTATG
GGTGTCGGTATATCTGCTCTTTCTGTCCCCATGTCACACGACGAAGATGG
ACTCCCTTTATTGATACACGTGCGAGAAAACAATGACAAACTCTTTACCG
CCTTCCTGGCGTCAGTCATCGCGTCTCTGGCTTCATTGAACTTTGGTTAC
GCTCTTGGCTACTCTTCACCAACGCAAAAACAAATGTCTCCAGACCCGCT
AGATAAAGATCAATTCTCATGGTTCAGCAAACACAAGAAAAAATATCGTT
GAGAGCATTTTTGAGTCCAGTTTTGTATCGACCCTTGATCATTGGATGTA
TGATGATGGTTTTCCAGCAGATGGTTGGTATCAATGCCATTCTCTTCTTC
TGTGATAAAGTCTTCACTCAAGCCGGTATCTCCTGGGATGAATATGCATC
CATTGCTGCTATCTGTGTCCTTTTCGCCTTCACCGTCGTCTCCTGCTTGA
CAGTGGATCGTCTTGGAAGACGTATACTTCTGTTGGTTGGTAGTGTCGTT
ATGTTCGTTTGTATGTTTTTGTTGGGTGTGTATTATGACTTGGCCGAAAA
CCCTAAAAATACCCTCAGAATTTTTGGTCATAAATCTCACACCATCCCTG
TATCGCACATTTCGTGGTTGGCCTTACTCTCTGTTTTCCTGTATCTTGCA
TTGTTTGCCATCGGTTGGGGCCCGTTACCATGGGTACTGATGGGTGAATT
GTTTCCACCACGTGCTCGTAGTCAAGCAAGCAGTATGGTAACCATGGTGA
ACCTCATTTTCACTTTTATCGTTGGAAAAACTTTTGCTTCTTTCACTGAT
GTATTTCAACCACAAGGCACCTTTTGGTTTTATTCAGGATTCTGTATTTT
AAGCTTCCTGTACACCATGTTTTTCGTACCGGAAACGAAAGGCAAAACTT
TGATGGAAATCGAACGTATATTTGCCACATCAACACAATAGATGTACATT
TCGGAGATTGCATCATCACGATACAGGGGTGGATTGAGTTGCATCAACCA
GTTGTTCATCACATTTGGTGACGTGGTGGTGTACTCCATCGGTGCCATCC
ACGCAGTAAAGTGGCAGTGGTTGGCTATCATCCCCGTCATCATTGCAACC
ATAGCTATCCTACTCATGTCCTTCATGCCAGAAACACCTGTCTGGCTGCT
TGCCAATCATAAGAAAGGTGAAGCACTTCGAACGCTGGTCTGGTTGAGAG
GTTCTTCTTACGATTGTGCATCTGAATTGAACGATCTTCAACTCAACCTT
GTCAATTGTTGCACTGGGAGCCATAGTGGGAAGTTGGATTGGCGCTTATA
TGGTGGATAAGTTAGGAAGGAAGATGTCCATCATGTTGAGCGCCTTCTTC
TACGTGCCAGGCTGGTGTTTGATAGCGTATGGTGAAAGTGTGGGTATGTT
GTATGTGGGTCGCATCATCAGTGGTATGGGTGTCGGTATATCTGCTCTTT
CTGTCCCCATGTCACACGACGAAGATGGACTCCCTTTATTGATACACGTG
CGAGAAAACAATGACAAACTCTTTACCGCCTTCCTGGCGTCAGTCATCGC
GTCTCTGGCTTCATTGAACTTTGGTTACGCTCTTGGCTACTCTTCACCAA
CGCAAAAACAAATGTCTCCAGACCCGCTAGATAAAGATCAATTCTCATGG
TTCAGCAAACACAAGAAAAAATATCGTTGAGAGCATTTTTGAGTCCAGTT
TTGTATCGACCCTTGATCATTGGATGTATGATGATGGTTTTCCAGCAGAT
GGTTGGTATCAATGCCATTCTCTTCTTCTGTGATAAAGTCTTCACTCAAG
CCGGTATCTCCTGGGATGAATATGCATCCATTGCTGCTATCTGTGTCCTT
TTCGCCTTCACCGTCGTCTCCTGCTTGACAGTGGATCGTCTTGGAAGACG
TATACTTCTGTTGGTTGGTAGTGTCGTTATGTTCGTTTGTATGTTTTTGT
TGGGTGTGTATTATGACTTGGCCGAAAACCCTAAAAATACCCTCAGAATT
TTTGGTCATAAATCTCACACCATCCCTGTATCGCACATTTCGTGGTTGGC
CTTACTCTCTGTTTTCCTGTATCTTGCATTGTTTGCCATCGGTTGGGGCC
CGTTACCATGGGTACTGATGGGTGAATTGTTTCCACCACGTGCTCGTAGT
CAAGCAAGCAGTATGGTAACCATGGTGAACCTCATTTTCACTTTTATCGT
TGGAAAAACTTTTGCTTCTTTCACTGATGTATTTCAACCACAAGGCACCT
TTTGGTTTTATTCAGGATTCTGTATTTTAAGCTTCCTGTACACCATGTTT
TTCGTACCGGAAACGAAAGGCAAAACTTTGATGGAAATCGAACGTATATT
TGCCACATCAACACAATAGATGTACATTTCGGAGATTGCATCATCACGAT
ACAGGGGTGGATTGAGTTGCATCAACCAGTTGTTCATCACATTTGGTGAC
GTGGTGGTGTACTCCATCGGTGCCATCCACGCAGTAAAGTGGCAGTGGTT
GGCTATCATCCCCGTCATCATTGCAACCATAGCTATCCTACTCATGTCCT
TCATGCCAGAAACACCTGTCTGGCTGCTTGCCAATCATAAGAAAGGTGAA
GCACTTCGAACGCTGGTCTGGTTGAGAGGTTCTTCTTACGATTGTGCATC
TGAATTGAACGATCTTCAACTCAACCTTGTCAATTGTTGCACTGGGAGCC
ATAGTGGGAAGTTGGATTGGCGCTTATATGGTGGATAAGTTAGGAAGGAA
GATGTCCATCATGTTGAGCGCCTTCTTCTACGTGCCAGGCTGGTGTTTGA
TAGCGTATGGTGAAAGTGTGGGTATGTTGTATGTGGGTCGCATCATCAGT
GGTATGGGTGTCGGTATATCTGCTCTTTCTGTCCCCATGTCACACGACGA
AGATGGACTCCCTTTATTGATACACGTGCGAGAAAACAATGACAAACTCT
TTACCGCCTTCCTGGCGTCAGTCATCGCGTCTCTGGCTTCATTGAACTTT
GGTTACGCTCTTGGCTACTCTTCACCAACGCAAAAACAAATGTCTCCAGA
CCCGCTAGATAAAGATCAATTCTCATGGTTCAGCAAACACAAGAAAAAAT
ATCGTTGAGAGCATTTTTGAGTCCAGTTTTGTATCGACCCTTGATCATTG
GATGTATGATGATGGTTTTCCAGCAGATGGTTGGTATCAATGCCATTCTC
TTCTTCTGTGATAAAGTCTTCACTCAAGCCGGTATCTCCTGGGATGAATA
TGCATCCATTGCTGCTATCTGTGTCCTTTTCGCCTTCACCGTCGTCTCCT
GCTTGACAGTGGATCGTCTTGGAAGACGTATACTTCTGTTGGTTGGTAGT
GTCGTTATGTTCGTTTGTATGTTTTTGTTGGGTGTGTATTATGACTTGGC
CGAAAACCCTAAAAATACCCTCAGAATTTTTGGTCATAAATCTCACACCA
TCCCTGTATCGCACATTTCGTGGTTGGCCTTACTCTCTGTTTTCCTGTAT
CTTGCATTGTTTGCCATCGGTTGGGGCCCGTTACCATGGGTACTGATGGG
TGAATTGTTTCCACCACGTGCTCGTAGTCAAGCAAGCAGTATGGTAACCA
TGGTGAACCTCATTTTCACTTTTATCGTTGGAAAAACTTTTGCTTCTTTC
ACTGATGTATTTCAACCACAAGGCACCTTTTGGTTTTATTCAGGATTCTG
TATTTTAAGCTTCCTGTACACCATGTTTTTCGTACCGGAAACGAAAGGCA
AAACTTTGATGGAAATCGAACGTATATTTGCCACATCAACACAATAGATG
TACATTTCGGAGATTGCATCATCACGATACAGGGGTGGATTGAGTTGCAT
CAACCAGTTGTTCATCACATTTGGTGACGTGGTGGTGTACTCCATCGGTG
CCATCCACGCAGTAAAGTGGCAGTGGTTGGCTATCATCCCCGTCATCATT
GCAACCATAGCTATCCTACTCATGTCCTTCATGCCAGAAACACCTGTCTG
GCTGCTTGCCAATCATAAGAAAGGTGAAGCACTTCGAACGCTGGTCTGGT
TGAGAGGTTCTTCTTACGATTGTGCATCTGAATTGAACGATCTTCAACTC
AACCTTGTCAATTGTTGCACTGGGAGCCATAGTGGGAAGTTGGATTGGCG
CTTATATGGTGGATAAGTTAGGAAGGAAGATGTCCATCATGTTGAGCGCC
TTCTTCTACGTGCCAGGCTGGTGTTTGATAGCGTATGGTGAAAGTGTGGG
TATGTTGTATGTGGGTCGCATCATCAGTGGTATGGGTGTCGGTATATCTG
CTCTTTCTGTCCCCATGTCACACGACGAAGATGGACTCCCTTTATTGATA
CACGTGCGAGAAAACAATGACAAACTCTTTACCGCCTTCCTGGCGTCAGT
CATCGCGTCTCTGGCTTCATTGAACTTTGGTTACGCTCTTGGCTACTCTT
CACCAACGCAAAAACAAATGTCTCCAGACCCGCTAGATAAAGATCAATTC
TCATGGTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011135XLOC_011135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019800-exon-sc0000336-1575043694:107146..107454TCONS_00019800-exon-sc0000336-1575043694:107146..107454Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1575043694:106809..107015TCONS_00019800-exon-sc0000336-1575043694:106809..107015Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1575043694:106382..106691TCONS_00019800-exon-sc0000336-1575043694:106382..106691Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1575043694:104983..106235TCONS_00019800-exon-sc0000336-1575043694:104983..106235Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1510915933:107146..107454TCONS_00019800-exon-sc0000336-1510915933:107146..107454Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1510915933:106809..107015TCONS_00019800-exon-sc0000336-1510915933:106809..107015Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1510915933:106382..106691TCONS_00019800-exon-sc0000336-1510915933:106382..106691Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1510915933:104983..106235TCONS_00019800-exon-sc0000336-1510915933:104983..106235Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1491911889:107146..107454TCONS_00019800-exon-sc0000336-1491911889:107146..107454Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1491911889:106809..107015TCONS_00019800-exon-sc0000336-1491911889:106809..107015Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1491911889:106382..106691TCONS_00019800-exon-sc0000336-1491911889:106382..106691Clytia hemisphaericaexon
TCONS_00019800-exon-sc0000336-1491911889:104983..106235TCONS_00019800-exon-sc0000336-1491911889:104983..106235Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019800-proteinTCONS_00019800-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:104983..107454 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.217	28.9537	5.86435	3.78287	5.52633	4.44785	7.34186	9.20254	16.7068	16.0206	35.5016	26.0666	87.6805	86.3398	91.8179	97.2746	37.3856	54.0996	63.0644	57.6774	31.3115	30.9752	33.8041	38.1491	29.2709	20.3062	8.55875	13.4374	36.3662	34.8203
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003663Sugar/inositol_transpt
IPR005828MFS_sugar_transport-like
IPR005829Sugar_transporter_CS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022891substrate-specific transmembrane transporter activity
GO:0022857transmembrane transporter activity
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0022891 substrate-specific transmembrane transporter activity
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00019800 vs. Swiss-Prot (Human)
Match: GTR8 (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=1 SV=3)

HSP 1 Score: 258.07 bits (658), Expect = 4.366e-77
Identity = 173/449 (38.53%), Postives = 264/449 (58.80%), Query Frame = 1 
Query:  217 LNFGYALGYSSPT----QKQMSPDP-LDKDQFSWFSSIVALGAIVGSWIGAYMVDKLGRKMSIMLSAFFYVPGWCLIAYGESVGMLYVGRIISGMGVGISALSVPMYISEIASSRYRGGLSCINQLFITFGDVVVYSIGAIHAVKWQWXXXXXXXXXXXXXXXMSFMPETPVWLLANHKKGEALRTLVWLRGSSYDCASELNDLQLNLETQEKISLRAFLSPVLYRPLIIGCMMMVFQQMVGINAILFFCDKVFTQAGISWDEYASIAAICVLFAFTVVSCLTVDRLGRRILLLVGSVVMFVCMFLLGVYYDLAEN-PKNTLRIFGHKSHTIPVSH--------ISWXXXXXXXXXXXXXXIGWGPLPWVLMGELFPPRARSQASSMVTMVNLIFTFIVGKTFASFTDVFQPQGTFWFYSGFCILSFLYTMFFVPETKGKTLMEIERIF 1521
            L+FG+ALGYSSP     Q+   P P LD    SWF ++V LGA  G  +G ++VD+ GRK+S++L +  +V G+ +I   + V ML  GR+++G+  G+++L  P+YISEIA    RG L    QL +  G ++ Y  G +  ++W+WLA++  +  ++ +LLM FMPETP +LL  H++ EA+  L +L GS         D  +  E    ++L     P +Y+P IIG  +M FQQ+ G+NA++F+ + +F +A       AS+    +   FT V+ L +DR GRR+LL++  VVM       G Y+ L +  P N+     H + + PVS         ++WLA+ S+ L++A FA+GWGP+PW+LM E+FP   +  A+ +  + N +  F+V K F+S  +V +P G FW  S FCI S L+T+F VPETKGKTL +I   F
Sbjct:   38 LSFGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGWV--LEWRWLAVLGCVPPSLMLLLMCFMPETPRFLLTQHRRQEAMAALRFLWGSEQG----WEDPPIGAEQSFHLAL--LRQPGIYKPFIIGVSLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNS----SHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHF 474
The following BLAST results are available for this feature:
BLAST of TCONS_00019800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTR84.366e-7738.53Solute carrier family 2, facilitated glucose trans... [more]
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