TCONS_00019950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019950
Unique NameTCONS_00019950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019950 ID=TCONS_00019950|Name=TCONS_00019950|organism=Clytia hemisphaerica|type=transcript|length=708bp
ATTTCAATCCTTTTTTGTTAAAGTTAATTGCATTTAAATCCAAATTCAAT
Catagttttttcaaaagttttgaaagtgtcaaaaaatttaaaaattattt
cagtCTGTATAATCTATGAGTGCTAATTTTTAGCGTACAAAGCCCGTAAC
TGGAATTATTGATGCCAATCGGCTATCATGGTCTGATACCAAGACTTtct
aaaaccaaaacaaacgtaagcgatcgaaatcgaaagtattttgaaaaagg
GTGAAGGCGGAAAGGAGGATCACAACCAACAACGATAACAACACTAAAGA
AGTAAAAGGCAAGGTTACTTCATTCAGCATAACGTTGGTCATTAGTCCTA
AATTTTGTTCAGTACTTCAAAAAAGGAAACAACAATGACAAAGCACGAAT
TCAAAGTGGCAATGACATGTGAAGGATGTTCAGGGGCTATCACAAGAATC
CTGAAAAAGACTGAAGGGATTAATAATTTTGATGTCAATCTGGAAACAAA
GCAAGTTTTTGTAGAAACAGATCGCCCTTCagatgaaattttggaaatcg
tCAAAAAATGTGGAAAAGAAACAACTTTTGTGGGGTCTTCTTAGAGCGAA
TTTATTGCTtgtaattttttagtttttttggatGAACTGtattagaattt
tttatttattttgacttttacattttaaatttgACGATTCTCTGTATTAC
TTTATGTN
Run BLAST on NCBI

transcript from alignment at sc0000339:179021..180056-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019950 ID=TCONS_00019950|Name=TCONS_00019950|organism=Clytia hemisphaerica|type=transcript|length=1036bp|location=Sequence derived from alignment at sc0000339:179021..180056- (Clytia hemisphaerica)
ATTTCAATCCTTTTTTGTTAAAGTTAATTGCATTTAAATCCAAATTCAAT
CATAGTTTTTTCAAAAGTTTTGAAAGTGTCAAAAAATTTAAAAATTATTT
CAGTCTGTATAATCTATGAGTGCTAATTTTTAGCGTACAAAGCCCGTAAC
TGGAATTATTGATGCCAATCGGCTATCATGGTCTGATACCAAGACTTTCT
AAAACCAAAACAAACGTAAGCGATCGAAATCGAAAGTATTTTGAAAAAGG
GTGAAGGCGGAAAGGAGGATCACAACCAACAACGATAACAACACTAAAGA
AGTAAAAGGCAAGGTTACTTCATTCAGCATAACGTTGGTCATTAGTCCTA
AATTTTGTTCAGTACTTCAAAAAAGGAAACAACAATGACAGTGAGTAAAA
TCTTTCATCTATCATTGGATTTTTCTGCACCCTTGTATTTTCTAGATAAA
AATACCTACCTAACGCTAACGCCTAAGCTAAAGTTATTATACTATACAAT
CAATAGCTTTTTCCAATCGATTACTTATCGAATATGAATCCTTAAATGTT
GTTCCCTTTTAGAAGCACGAATTCAAAGTGGCAATGACATGTGAAGGATG
TTCAGGGGCTATCACAAGAATCCTGAAAAAGACTGAAGGTAACTACTTTC
TTTGTTATTGTGATTGTGTTTCTAAAGATTTTTATAAACTTAGAAAATTA
AATGAGCATAATTACCTGGCCTAAACCTATAGAACTTTATTTATACATTT
ATAAGGTATGTTCAGAAGGTCATTATTCTTTATTTTTATCATAGGGATTA
ATAATTTTGATGTCAATCTGGAAACAAAGCAAGTTTTTGTAGAAACAGAT
CGCCCTTCAGATGAAATTTTGGAAATCGTCAAAAAATGTGGAAAAGAAAC
AACTTTTGTGGGGTCTTCTTAGAGCGAATTTATTGCTTGTAATTTTTTAG
TTTTTTTGGATGAACTGTATTAGAATTTTTTATTTATTTTGACTTTTACA
TTTTAAATTTGACGATTCTCTGTATTACTTTATGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011198XLOC_011198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019950-exon-sc0000339-1575043694:179667..180056TCONS_00019950-exon-sc0000339-1575043694:179667..180056Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1575043694:179419..179494TCONS_00019950-exon-sc0000339-1575043694:179419..179494Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1575043694:179021..179262TCONS_00019950-exon-sc0000339-1575043694:179021..179262Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1510915933:179667..180056TCONS_00019950-exon-sc0000339-1510915933:179667..180056Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1510915933:179419..179494TCONS_00019950-exon-sc0000339-1510915933:179419..179494Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1510915933:179021..179262TCONS_00019950-exon-sc0000339-1510915933:179021..179262Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1491911889:179667..180056TCONS_00019950-exon-sc0000339-1491911889:179667..180056Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1491911889:179419..179494TCONS_00019950-exon-sc0000339-1491911889:179419..179494Clytia hemisphaericaexon
TCONS_00019950-exon-sc0000339-1491911889:179021..179262TCONS_00019950-exon-sc0000339-1491911889:179021..179262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:179021..180056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
148.736	162.582	41.5382	34.5744	469.616	356.096	327.147	358.471	144.33	164.007	79.7388	90.0136	64.0237	55.6859	89.2616	95.1415	145.494	175.495	64.3928	116.417	123.597	125.635	211.461	190.84	75.2657	84.1364	224.517	140.77	109.294	97.2837
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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