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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019951 ID=TCONS_00019951|Name=TCONS_00019951|organism=Clytia hemisphaerica|type=transcript|length=3505bp
CCTCTAATCGCGAAAGTACATTTAGACATGCTAATTGTGGTCAATTTAAT
AAAGCTATTAAAAGCGAGAAAGAGATCGTTGTTCCAAAATATAAAGCTTC
AAAAGTACACATATTATTACACATAGAAGACAAGCGAAGGCAAGATGAGT
GAGCAGAAGAAATCTTTTCCATGCGTAATCGTTCATGGTGGGGCATTCAA
TGTCCCTGAATCGTACGTTAAGAGATACACAGAAGGAACACAAGCAGCGG
CTAAAGCAGGATATCAATCCATGCTCACTGGAGGCAACGCACTGGACGCA
GCAGAAGCAGCAGTCAATTCATTGGAAAACAACAGTGCTTTCAATGCAGG
ACGTGGTTCCGTTTTGACTGAAGCCGGAACCGTCGAATGTGATGCGGTTA
TTGTGGATGGAACCNATATATAACCTTTCGCTGATATTACAGGTGGATTA
CCAGGAAAGATGCTGGGCCGTGTGGGCGATTCTCCCATCTTTGGTGCAGG
AGCATACGGTGATAAGAATGGGTGTTCTTCATCCACTGGTCATGGCGAAC
CTTTCTTGAAGGCTGCTGCTTGTAGACAGGCGAATTACTTTTTGGAACAG
GGCAACGGACCGATGGAGGCGTGTCAAAAAACATTGGATTACATTCTGGA
AGAGATCGGTTATGGACACGGTGGCATCATCCTTATCGACAAGAAAGGGG
AGATAGGATATGCGTTTAATACAGCCACCATGGCATGGGCCTCTGTATCT
GATGCTGGCATGCGGTATGGTATGCGACCTGGTGAAGACTTCACAGTGAC
TTTATGAAACAgaacattttacaatttctttaatttaaaaactttaatat
AAAGTCACATACGAGCCGGTTTGTTAAAAAGGACGGAGCCATCTTTTTAT
TTACTATACATCTTTATAATAACTGGTGTACAAATTATAATACATTTGGA
AATTCACTATTTACTAAGATAGACGTGTTGAGAGGGAGGAGTATCGATCc
caaaagaaattgaacaagtgatacttttatggacctacctggttatgcat
ttaacaaatatataattgatttacgtgagcgtgaccattaaacaatcatt
cagaacacaaatagtgacgatctattaaaattagtcgtttgtttcttatt
aaaaaaacgtttagaaaccaaaatttcatgctcttgaaatattctttcat
attcaagacttaatgagcaaaaaaacatctatctcataaaaaaattgagt
aatttgacgtagaacattgatgtatgcttattaatagtgattcttataga
taaacatgcgtttttgagccaacaaactttttttgaaaaaatctgcttga
gctatattttacctatgatggtaccctactttcatgcaaaaaaatcagaa
aaagttaatggtccaatttttcacaaagtccaaaaaacccgttttttagc
cgttttttcggccaaaatttgcccaaatttttttttttcgaaagtagGGC
Tcggtcacattcgagggtttatagttatgcatctttgtgcaaaaaatcat
aaagaatcaaagaaccaatctcgagaaaagctaatacctaagtaattgat
aatgtgcttataaataaatatcgaatttggccagtttttctataaaaaca
cgccaagaaaccaaaatttcatgtctaaacacacacattcttcaaaagta
agccctcatgagcaaaaaaaacttctatctcataaaaaaattgagtaatt
taaccaagaacattgatgtatgcttattaatagtgattcctatagataaa
catgcgttttttgagccaacaaattttttttgcaaaaattcgcttaagcc
atcttttgcctacgatggtaccctactttcatgcaaaaaatcagaaaaaa
ttaacgacctaatttttcacaaagtccaaaaaacccgttttttagccgtt
ttttgccccccaatttttttttttgaaaatcgggctccgtcacattcgag
ggtttatagttttgcatctttgtgcaaaaaatcagaaaaaactaacgagc
caatcatgaggaaagctaataacgaacagacgaacgaacggacaaaggtt
aatttataggacctccaccggggtaggtccaaaaagttgaaaaagaagAT
CCTTTATATGAGAATCAAGATGGTCACTAAACAATTATTATTAAATTCAT
TTCTCTATAAGCATACAAGAAAATCGGACTGTTGTTTAAGGTAAAACATA
ATATTGTGCATACTTAAACCTTATGCCTATTTGTACTAAgtttttagggg
cggttcaataCCGAGGGGgacttttcctgtaccaccctcaacttttgatc
tagttgccattttttaataatatttgGCACGCAAATCATTGTCGAcgtca
aaaaacgtaaaagccgAAGATTTACTTTGTTTCTCTAAAAAAGCAATAGC
AAACTAACAAAGTCCTAAGAAAACCTTGTCTTCAATAAGctaaaaaggtt
gatttttttcCCAagtattcaataaattacggtctATATAAAATTGAAAT
GTAATGAAAATGTGTAATTTTTTATGACATCTTAGTgtcatgtcatcatg
ctcaaggtgtgaatttttttcggtgtcaaaaatgattttattttaagcta
aattaaaatcaaaaatttcataaaatgaatATTCACTTCAAACGCTTTAT
TATTTTAGGCCCTATTAACATCATTTTCCCTAACGAACAGAAAAAAAGGG
GGCTTGCACGCATAGGATCATGGGATGCCCTCAATTTGACTACAATTTGT
CAAATTAAATTGGCTCAGGATCAGCTTATTAATTTTATCATTATATGACT
TTATTTGCGTTTCTATTACCTAGTGTTATTTTCTAATGCAgacgaaaaat
taagaattaaaaaaaaaatttccactgTCAGCAGTgccaaaatttgaatt
gaaaatttacagCATTTGAATGATCGTGTTCGAGAATCAAATGATTTTGT
TAAATACATTCCATCGGCCAATGAATAAATTATTTCATACCAAATCAAGT
CGTCGCAAGAACCGCCTTTGCTTCTTTCACTTGCCTTGAGAAATTCTACA
AAATTGAAACAGAATCGATTTAAAGGAAATGCTGCTGCTTTGAAATTGTT
AACTAAATGATGAAACTATAACAAAGAAATGTAGGATTTTCCGAGAAAAC
TTTACTCCTTGTAACGTAACTTCAAAACGAAACTTCCAGTAGATTTCGGA
CACCAGAAAGTATGAGGTCACCTGGAATTCATTGAGCGTCATCTCAACGG
TTTTGGTCGTTTCTTGGTTACATTCATCCTTCAAATGGAATTTCAACGTC
ACTGTCGGCGCATCTAGATTCTTACAATTGTTTGAGCTACATGCCATACT
CAACTTCCAATCAAACTTTATCAGTTGACCCACATTGAAGTTCCCATCAC
CGACTaccattttaattttattttacagtGTTTATTCTGTGTTATTTATT
TCTGT Run BLAST on NCBI protein sequence of TCONS_00019951-protein >TCONS_00019951-protein ID=TCONS_00019951-protein|Name=TCONS_00019951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSKKNFYLIKKLSNLTKNIDVCLLIVIPIDKHAFFEPTNFFCKNSLKPSF
AYDGTLLSCKKSEKINDLIFHKVQKTRFLAVFCPPIFFFENRAPSHSRVY
SFASLCKKSEKTNEPIMRKANNEQTNERTKVNL Run BLAST on NCBI transcript from alignment at sc0000339:277526..281528- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019951 ID=TCONS_00019951|Name=TCONS_00019951|organism=Clytia hemisphaerica|type=transcript|length=4003bp|location=Sequence derived from alignment at sc0000339:277526..281528- (Clytia hemisphaerica)
CCTCTAATCGCGAAAGTACATTTAGACATGCTAATTGTGGTCAATTTAAT
AAAGCTATTAAAAGCGAGAAAGAGATCGTTGTTCCAAAATATAAAGCTTC
AAAAGTACACATATTATTACACATAGAAGACAAGCGAAGGCAAGATGAGT
GAGCAGAAGAAATCTTTTCCATGCGTAATCGTTCATGGTGGGGCATTCAA
TGTCCCTGAATCGTACGTTAAGAGATACACAGAAGGAACACAAGCAGCGG
CTAAAGCAGGATATCAATCCATGCTCACTGTAAGTACGATTCCTATCTTT
CGCTATGAAGATTAAGTGATTACATAGATCCGTAGCCTTTCTATGACATC
ATTACAATGCAGATTCACTTGATCTTTACAGGGAGGCAACGCACTGGACG
CAGCAGAAGCAGCAGTCAATTCATTGGAAAACAACAGTGCTTTCAATGCA
GGACGTGGTTCCGTTTTGACTGAAGCCGGAACCGTCGAATGTGATGCGGT
TATTGTGGATGGAACCNATATATAACCTTTCGCTGATATTACAGGTGGAT
TACCAGGAAAGATGCTGGGCCGTGTGGGCGATTCTCCCATCTTTGGTGCA
GGAGCATACGGTGATAAGAATGGGTGTTCTTCATCCACTGGTCATGGCGA
ACCTTTCTTGAAGGCTGCTGCTTGTAGACAGGTAAAGAAACTTCATTTTC
AGGGATGCAAACAAAGCAACTTATAAATAGCAATACNCCAATCGAAAAAC
AGGTTTATCTACTTTCCTCCATTTTCAAAGACCTGAACTAATTTTCCACT
AAATCTAACAGCCAGAATCTTCCACTGCTCTTTTCCAAAGATCAATAAAT
GATTAAATTGAACATCCAAAAGACTGAGTTGCAAAGACACAAAACCTTCC
CTTGACGGAAGATATGTCGAAAATAAATACAGCTTAAATCGATTTGTCAG
TCATACTCTGAGACAGTAGTATAACATAAAAGGGAAAATGCATTAACTTG
CTCTTGCTCTCAGTACTGTGCACAGTTGAACTTTCTCACGATAATCTATN
TACATTTTGAAATCAATTCTTTTTCAGGCGAATTACTTTTTGGAACAGGG
CAACGGACCGATGGAGGCGTGTCAAAAAACATTGGATTACATTCTGGAAG
AGATCGGTTATGGACACGGTGGCATCATCCTTATCGACAAGAAAGGGGAG
ATAGGATATGCGTTTAATACAGCCACCATGGCATGGGCCTCTGTATCTGA
TGCTGGCATGCGGTATGGTATGCGACCTGGTGAAGACTTCACAGTGACTT
TATGAAACAGAACATTTTACAATTTCTTTAATTTAAAAACTTTAATATAA
AGTCACATACGAGCCGGTTTGTTAAAAAGGACGGAGCCATCTTTTTATTT
ACTATACATCTTTATAATAACTGGTGTACAAATTATAATACATTTGGAAA
TTCACTATTTACTAAGATAGACGTGTTGAGAGGGAGGAGTATCGATCCCA
AAAGAAATTGAACAAGTGATACTTTTATGGACCTACCTGGTTATGCATTT
AACAAATATATAATTGATTTACGTGAGCGTGACCATTAAACAATCATTCA
GAACACAAATAGTGACGATCTATTAAAATTAGTCGTTTGTTTCTTATTAA
AAAAACGTTTAGAAACCAAAATTTCATGCTCTTGAAATATTCTTTCATAT
TCAAGACTTAATGAGCAAAAAAACATCTATCTCATAAAAAAATTGAGTAA
TTTGACGTAGAACATTGATGTATGCTTATTAATAGTGATTCTTATAGATA
AACATGCGTTTTTGAGCCAACAAACTTTTTTTGAAAAAATCTGCTTGAGC
TATATTTTACCTATGATGGTACCCTACTTTCATGCAAAAAAATCAGAAAA
AGTTAATGGTCCAATTTTTCACAAAGTCCAAAAAACCCGTTTTTTAGCCG
TTTTTTCGGCCAAAATTTGCCCAAATTTTTTTTTTTCGAAAGTAGGGCTC
GGTCACATTCGAGGGTTTATAGTTATGCATCTTTGTGCAAAAAATCATAA
AGAATCAAAGAACCAATCTCGAGAAAAGCTAATACCTAAGTAATTGATAA
TGTGCTTATAAATAAATATCGAATTTGGCCAGTTTTTCTATAAAAACACG
CCAAGAAACCAAAATTTCATGTCTAAACACACACATTCTTCAAAAGTAAG
CCCTCATGAGCAAAAAAAACTTCTATCTCATAAAAAAATTGAGTAATTTA
ACCAAGAACATTGATGTATGCTTATTAATAGTGATTCCTATAGATAAACA
TGCGTTTTTTGAGCCAACAAATTTTTTTTGCAAAAATTCGCTTAAGCCAT
CTTTTGCCTACGATGGTACCCTACTTTCATGCAAAAAATCAGAAAAAATT
AACGACCTAATTTTTCACAAAGTCCAAAAAACCCGTTTTTTAGCCGTTTT
TTGCCCCCCAATTTTTTTTTTTGAAAATCGGGCTCCGTCACATTCGAGGG
TTTATAGTTTTGCATCTTTGTGCAAAAAATCAGAAAAAACTAACGAGCCA
ATCATGAGGAAAGCTAATAACGAACAGACGAACGAACGGACAAAGGTTAA
TTTATAGGACCTCCACCGGGGTAGGTCCAAAAAGTTGAAAAAGAAGATCC
TTTATATGAGAATCAAGATGGTCACTAAACAATTATTATTAAATTCATTT
CTCTATAAGCATACAAGAAAATCGGACTGTTGTTTAAGGTAAAACATAAT
ATTGTGCATACTTAAACCTTATGCCTATTTGTACTAAGTTTTTAGGGGCG
GTTCAATACCGAGGGGGACTTTTCCTGTACCACCCTCAACTTTTGATCTA
GTTGCCATTTTTTAATAATATTTGGCACGCAAATCATTGTCGACGTCAAA
AAACGTAAAAGCCGAAGATTTACTTTGTTTCTCTAAAAAAGCAATAGCAA
ACTAACAAAGTCCTAAGAAAACCTTGTCTTCAATAAGCTAAAAAGGTTGA
TTTTTTTCCCAAGTATTCAATAAATTACGGTCTATATAAAATTGAAATGT
AATGAAAATGTGTAATTTTTTATGACATCTTAGTGTCATGTCATCATGCT
CAAGGTGTGAATTTTTTTCGGTGTCAAAAATGATTTTATTTTAAGCTAAA
TTAAAATCAAAAATTTCATAAAATGAATATTCACTTCAAACGCTTTATTA
TTTTAGGCCCTATTAACATCATTTTCCCTAACGAACAGAAAAAAAGGGGG
CTTGCACGCATAGGATCATGGGATGCCCTCAATTTGACTACAATTTGTCA
AATTAAATTGGCTCAGGATCAGCTTATTAATTTTATCATTATATGACTTT
ATTTGCGTTTCTATTACCTAGTGTTATTTTCTAATGCAGACGAAAAATTA
AGAATTAAAAAAAAAATTTCCACTGTCAGCAGTGCCAAAATTTGAATTGA
AAATTTACAGCATTTGAATGATCGTGTTCGAGAATCAAATGATTTTGTTA
AATACATTCCATCGGCCAATGAATAAATTATTTCATACCAAATCAAGTCG
TCGCAAGAACCGCCTTTGCTTCTTTCACTTGCCTTGAGAAATTCTACAAA
ATTGAAACAGAATCGATTTAAAGGAAATGCTGCTGCTTTGAAATTGTTAA
CTAAATGATGAAACTATAACAAAGAAATGTAGGATTTTCCGAGAAAACTT
TACTCCTTGTAACGTAACTTCAAAACGAAACTTCCAGTAGATTTCGGACA
CCAGAAAGTATGAGGTCACCTGGAATTCATTGAGCGTCATCTCAACGGTT
TTGGTCGTTTCTTGGTTACATTCATCCTTCAAATGGAATTTCAACGTCAC
TGTCGGCGCATCTAGATTCTTACAATTGTTTGAGCTACATGCCATACTCA
ACTTCCAATCAAACTTTATCAGTTGACCCACATTGAAGTTCCCATCACCG
ACTACCATTTTAATTTTATTTTACAGTGTTTATTCTGTGTTATTTATTTC
TGT Coding sequence (CDS) from alignment at sc0000339:277526..281528- >TCONS_00019951 ID=TCONS_00019951|Name=TCONS_00019951|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0000339:277526..281528- (Clytia hemisphaerica)
ATGAGCAAAAAAAACTTCTATCTCATAAAAAAATTGAGTAATTTAACCAA
GAACATTGATGTATGCTTATTAATAGTGATTCCTATAGATAAACATGCGT
TTTTTGAGCCAACAAATTTTTTTTGCAAAAATTCGCTTAAGCCATCTTTT
GCCTACGATGGTACCCTACTTTCATGCAAAAAATCAGAAAAAATTAACGA
CCTAATTTTTCACAAAGTCCAAAAAACCCGTTTTTTAGCCGTTTTTTGCC
CCCCAATTTTTTTTTTTGAAAATCGGGCTCCGTCACATTCGAGGGTTTAT
AGTTTTGCATCTTTGTGCAAAAAATCAGAAAAAACTAACGAGCCAATCAT
GAGGAAAGCTAATAACGAACAGACGAACGAACGGACAAAGGTTAATTTAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00019951-exon-sc0000339-1575043694:281250..281528 | TCONS_00019951-exon-sc0000339-1575043694:281250..281528 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1575043694:280848..281147 | TCONS_00019951-exon-sc0000339-1575043694:280848..281147 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1575043694:277526..280451 | TCONS_00019951-exon-sc0000339-1575043694:277526..280451 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1510915933:281250..281528 | TCONS_00019951-exon-sc0000339-1510915933:281250..281528 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1510915933:280848..281147 | TCONS_00019951-exon-sc0000339-1510915933:280848..281147 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1510915933:277526..280451 | TCONS_00019951-exon-sc0000339-1510915933:277526..280451 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1491911889:281250..281528 | TCONS_00019951-exon-sc0000339-1491911889:281250..281528 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1491911889:280848..281147 | TCONS_00019951-exon-sc0000339-1491911889:280848..281147 | Clytia hemisphaerica | exon |
| TCONS_00019951-exon-sc0000339-1491911889:277526..280451 | TCONS_00019951-exon-sc0000339-1491911889:277526..280451 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:277526..281528 - |
Blast
BLAST of TCONS_00019951 vs. Swiss-Prot (Human)
Match: ASGL1 (Isoaspartyl peptidase/L-asparaginase OS=Homo sapiens GN=ASRGL1 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 5.987e-20 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 427 FADITGGLPGKMLGRVGDSPIFGAGAYGDKN-GCSSSTGHGEPFLKAAACRQANYFLEQGNGPMEACQKTLDYILEEIGYGHGGIILIDKKGEIGYAFNTATMAWASVSDAGMRYGMRPGEDFTVT 801
+A TGG+ KM+GRVGDSP GAG Y D + G S+TGHGE LK R + +EQG EA +L Y+ + G GG+I++ K G+ + + +M WA+ D + +G+ P +D T+T
Sbjct: 182 YATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRV-KGLGGLIVVSKTGDWVAKWTSTSMPWAAAKDGKLHFGIDP-DDTTIT 305
The following BLAST results are available for this feature:
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