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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019978 ID=TCONS_00019978|Name=TCONS_00019978|organism=Clytia hemisphaerica|type=transcript|length=1141bp
aatattttttcctatAAACAATATCGTAAATACGAGGCAACAATTTCAAT
CTCCATCTCAAGGAATTAATGCTTATCACAATGCAACTTCGAATTCGTTT
CTTCATGGTCATCAGAATCAAAATGCGACCCAACAAGAGAATGTTGAAGC
AATCGATGTACAATATAGATCTAATACACCAACAAAGCATCAGTGTAATC
AGACCAGTGCAATTGCAGGCCAAAGTAGTGGATTAGATTACTTTTCGTCG
ATCGAGCAGGGtcaacaaaataatttcaatactACAAATACGCATGCGTC
TAGAAACTTCAACACCGTTCAGAACTTGCCAAATCGATTGACTCGTAGCA
GGACGACGTTTAATAATAATGCAAGAATAACGCAAGCTAATTCAATGACA
GAAATCGATAGATTTTATTTCAACTATGACCTGTTTATTAAAGAAGTAAG
AAAAGAAGAATGTATATGGAATGAAACGAGGGAAGGATACAACAATGAAG
AGTTGAGGGGAAAagcttggaaaaaaattttagaaCAAATGTTGGCGACT
GTGGTATATTATTTTTCCCACGATTTGTTGACATGTGATGAACAAGTCAA
TGAACTGAAGCAAGAATGGAAATTCATCATGTATAATTTCAAAGAATGCA
AACTAAATCGTAAACAATCACATTTGAAGGAGCCCCCCAAGTGTGAGTTT
TATAAAGCTTTGTCTTTCATGGATTCAATGATAACAGTTGGAAACAATGA
TGTCATGAAATATCCCGATATTCCTGATATCAGGATAATATTCAACAACG
GAATGGTGACAGGTGAATGGAAAATAGCAGCCAATCATTTTTTGGATACA
ATAATAAGGGTTAATTTTAGATGTAGCTGTAGTAGTGGCAATTATAGAGA
AAATGAAAAGGTAAACAAAAACGATGACAGGAGTGATGACTCGGATTTTC
AAAGTTCATCACAAGTAAGACTTAGAATCCGATTCAATCTTCAATATGAC
CAGTTTATCAAGCAAATACAAAAACATGAATGCATTTGGAATGAGAACAA
TGAAGACTACGAGAACAAAGAGTTAAGAAAACGGGCTTGGGAAAACGTTT
GGAAAGATGTGGTCGGTCACGGTTGGTTTATATACCTTACG Run BLAST on NCBI protein sequence of TCONS_00019978-protein >TCONS_00019978-protein ID=TCONS_00019978-protein|Name=TCONS_00019978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
IFFPINNIVNTRQQFQSPSQGINAYHNATSNSFLHGHQNQNATQQENVEA
IDVQYRSNTPTKHQCNQTSAIAGQSSGLDYFSSIEQGQQNNFNTTNTHAS
RNFNTVQNLPNRLTRSRTTFNNNARITQANSMTEIDRFYFNYDLFIKEVR
KEECIWNETREGYNNEELRGKAWKKILEQMLATVVYYFSHDLLTCDEQVN
ELKQEWKFIMYNFKECKLNRKQSHLKEPPKCEFYKALSFMDSMITVGNND
VMKYPDIPDIRIIFNNGMVTGEWKIAANHFLDTIIRVNFRCSCSSGNYRE
NEKVNKNDDRSDDSDFQSSSQVRLRIRFNLQYDQFIKQIQKHECIWNENN
EDYENKELRKRAWENVWKDVVGHGWFIYLT Run BLAST on NCBI transcript from alignment at sc0000345:265432..266994+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019978 ID=TCONS_00019978|Name=TCONS_00019978|organism=Clytia hemisphaerica|type=transcript|length=1563bp|location=Sequence derived from alignment at sc0000345:265432..266994+ (Clytia hemisphaerica)
aatattttttcctatAAACAATATCGTAAATACGAGGCAACAATTTCAAT
CTCCATCTCAAGGAATTAATGCTTATCACAATGCAACTTCGAATTCGTTT
CTTCATGGTCATCAGAATCAAAATGCGACCCAACAAGAGAATGTTGAAGC
AATCGATGTACAATATAGATCTAATACACCAACAAAGCATCAGTGTAATC
AGACCAGTGCAATTGCAGGCCAAAGTAGTGGATTAGATTACTTTTCGTCG
ATCGAGCAGGGtcaacaaaataatttcaatactACAAATACGCATGCGTC
TAGAAACTTCAACACCGTTCAGAACTTGCCAAATCGATTGACTCGTAGCA
GGACGACGTTTAATAATAATGCAAGAATAACGCAAGCTAATTCAATGACA
GAAATCGATAGATTTTATTTCAACTATGACCTGTTTATTAAAGAAGTAAG
AAAAGAAGAATGTATATGGAATGAAACGAGGGAAGGATACAACAATGAAG
AGTTGAGGGGAAAagcttggaaaaaaattttagaaCAAATGTTGGCGACT
GTGGTATATTATTTTTCCCACGATTTGTTGACATGTGATGAACAAGGTTA
GTATCACAATTTGAACAGACACGCTCTCGCTACTGAATAATTCTTTTTAC
CCTGTCACAAACTGCCGTTCAAACACTCGGACCTTAGTGCCAACTAAAGT
GCCTTTTAAGATTGTGAAGTATTGCTGAGTCATTTTccgtatttttcttt
tgttgtacTTTGACTTACAACTCTACTGTAGTGGATCTAGCAAGCTCCTG
ACTATCGCGCCACTTTTTCATTGCAAGtctatgttttgaaaaataatcta
GCATACAAGCATTGGATATAAAACATGATtgggaaattttgcattttttg
gaaGGAAAAAAGATCGGGATTTTAAGCTCGTTTACTAAAAAACTGTGCCT
GTACTTAAGCCTATATAATCAATGTTTAAGAAATTtgtataatttaattt
ttttttctctactTACAGTCAATGAACTGAAGCAAGAATGGAAATTCATC
ATGTATAATTTCAAAGAATGCAAACTAAATCGTAAACAATCACATTTGAA
GGAGCCCCCCAAGTGTGAGTTTTATAAAGCTTTGTCTTTCATGGATTCAA
TGATAACAGTTGGAAACAATGATGTCATGAAATATCCCGATATTCCTGAT
ATCAGGATAATATTCAACAACGGAATGGTGACAGGTGAATGGAAAATAGC
AGCCAATCATTTTTTGGATACAATAATAAGGGTTAATTTTAGATGTAGCT
GTAGTAGTGGCAATTATAGAGAAAATGAAAAGGTAAACAAAAACGATGAC
AGGAGTGATGACTCGGATTTTCAAAGTTCATCACAAGTAAGACTTAGAAT
CCGATTCAATCTTCAATATGACCAGTTTATCAAGCAAATACAAAAACATG
AATGCATTTGGAATGAGAACAATGAAGACTACGAGAACAAAGAGTTAAGA
AAACGGGCTTGGGAAAACGTTTGGAAAGATGTGGTCGGTCACGGTTGGTT
TATATACCTTACG Coding sequence (CDS) from alignment at sc0000345:265432..266994+ >TCONS_00019978 ID=TCONS_00019978|Name=TCONS_00019978|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000345:265432..266994+ (Clytia hemisphaerica)
atattttttcctatAAACAATATCGTAAATACGAGGCAACAATTTCAATC
TCCATCTCAAGGAATTAATGCTTATCACAATGCAACTTCGAATTCGTTTC
TTCATGGTCATCAGAATCAAAATGCGACCCAACAAGAGAATGTTGAAGCA
ATCGATGTACAATATAGATCTAATACACCAACAAAGCATCAGTGTAATCA
GACCAGTGCAATTGCAGGCCAAAGTAGTGGATTAGATTACTTTTCGTCGA
TCGAGCAGGGtcaacaaaataatttcaatactACAAATACGCATGCGTCT
AGAAACTTCAACACCGTTCAGAACTTGCCAAATCGATTGACTCGTAGCAG
GACGACGTTTAATAATAATGCAAGAATAACGCAAGCTAATTCAATGACAG
AAATCGATAGATTTTATTTCAACTATGACCTGTTTATTAAAGAAGTAAGA
AAAGAAGAATGTATATGGAATGAAACGAGGGAAGGATACAACAATGAAGA
GTTGAGGGGAAAagcttggaaaaaaattttagaaCAAATGTTGGCGACTG
TGGTATATTATTTTTCCCACGATTTGTTGACATGTGATGAACAAGTCAAT
GAACTGAAGCAAGAATGGAAATTCATCATGTATAATTTCAAAGAATGCAA
ACTAAATCGTAAACAATCACATTTGAAGGAGCCCCCCAAGTGTGAGTTTT
ATAAAGCTTTGTCTTTCATGGATTCAATGATAACAGTTGGAAACAATGAT
GTCATGAAATATCCCGATATTCCTGATATCAGGATAATATTCAACAACGG
AATGGTGACAGGTGAATGGAAAATAGCAGCCAATCATTTTTTGGATACAA
TAATAAGGGTTAATTTTAGATGTAGCTGTAGTAGTGGCAATTATAGAGAA
AATGAAAAGGTAAACAAAAACGATGACAGGAGTGATGACTCGGATTTTCA
AAGTTCATCACAAGTAAGACTTAGAATCCGATTCAATCTTCAATATGACC
AGTTTATCAAGCAAATACAAAAACATGAATGCATTTGGAATGAGAACAAT
GAAGACTACGAGAACAAAGAGTTAAGAAAACGGGCTTGGGAAAACGTTTG
GAAAGATGTGGTCGGTCACGGTTGGTTTATATACCTTACGatattttttc
ctatAAACAATATCGTAAATACGAGGCAACAATTTCAATCTCCATCTCAA
GGAATTAATGCTTATCACAATGCAACTTCGAATTCGTTTCTTCATGGTCA
TCAGAATCAAAATGCGACCCAACAAGAGAATGTTGAAGCAATCGATGTAC
AATATAGATCTAATACACCAACAAAGCATCAGTGTAATCAGACCAGTGCA
ATTGCAGGCCAAAGTAGTGGATTAGATTACTTTTCGTCGATCGAGCAGGG
tcaacaaaataatttcaatactACAAATACGCATGCGTCTAGAAACTTCA
ACACCGTTCAGAACTTGCCAAATCGATTGACTCGTAGCAGGACGACGTTT
AATAATAATGCAAGAATAACGCAAGCTAATTCAATGACAGAAATCGATAG
ATTTTATTTCAACTATGACCTGTTTATTAAAGAAGTAAGAAAAGAAGAAT
GTATATGGAATGAAACGAGGGAAGGATACAACAATGAAGAGTTGAGGGGA
AAagcttggaaaaaaattttagaaCAAATGTTGGCGACTGTGGTATATTA
TTTTTCCCACGATTTGTTGACATGTGATGAACAAGTCAATGAACTGAAGC
AAGAATGGAAATTCATCATGTATAATTTCAAAGAATGCAAACTAAATCGT
AAACAATCACATTTGAAGGAGCCCCCCAAGTGTGAGTTTTATAAAGCTTT
GTCTTTCATGGATTCAATGATAACAGTTGGAAACAATGATGTCATGAAAT
ATCCCGATATTCCTGATATCAGGATAATATTCAACAACGGAATGGTGACA
GGTGAATGGAAAATAGCAGCCAATCATTTTTTGGATACAATAATAAGGGT
TAATTTTAGATGTAGCTGTAGTAGTGGCAATTATAGAGAAAATGAAAAGG
TAAACAAAAACGATGACAGGAGTGATGACTCGGATTTTCAAAGTTCATCA
CAAGTAAGACTTAGAATCCGATTCAATCTTCAATATGACCAGTTTATCAA
GCAAATACAAAAACATGAATGCATTTGGAATGAGAACAATGAAGACTACG
AGAACAAAGAGTTAAGAAAACGGGCTTGGGAAAACGTTTGGAAAGATGTG
GTCGGTCACGGTTGGTTTATATACCTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019978-exon-sc0000345-1491911889:265432..266027 | TCONS_00019978-exon-sc0000345-1491911889:265432..266027 | Clytia hemisphaerica | exon |
| TCONS_00019978-exon-sc0000345-1510915933:265432..266027 | TCONS_00019978-exon-sc0000345-1510915933:265432..266027 | Clytia hemisphaerica | exon |
| TCONS_00019978-exon-sc0000345-1575043694:265432..266027 | TCONS_00019978-exon-sc0000345-1575043694:265432..266027 | Clytia hemisphaerica | exon |
| TCONS_00019978-exon-sc0000345-1491911889:266450..266994 | TCONS_00019978-exon-sc0000345-1491911889:266450..266994 | Clytia hemisphaerica | exon |
| TCONS_00019978-exon-sc0000345-1510915933:266450..266994 | TCONS_00019978-exon-sc0000345-1510915933:266450..266994 | Clytia hemisphaerica | exon |
| TCONS_00019978-exon-sc0000345-1575043694:266450..266994 | TCONS_00019978-exon-sc0000345-1575043694:266450..266994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:265432..266994 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR006578 | MADF-dom |
Blast
The following BLAST results are available for this feature:
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