TCONS_00019991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019991
Unique NameTCONS_00019991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019991 ID=TCONS_00019991|Name=TCONS_00019991|organism=Clytia hemisphaerica|type=transcript|length=2409bp
tgttggtaAAAACAGGGTCATTTAGTTTGATACCGTAAGAGGAAATAAAG
ACCCTGgttttttgtgttgttgttttttctggcAAGTCTGATTGAAAATC
TGTTAACCTTGATAAAGTAAAGAAGcaagtttttttattcaatgagCTGA
AGTAAAGTTTCCGGGTTTGTTTCTCGAGTAAAACAAATTTATCCACGAGA
AAGCTTCTGATGAGGAAGTGATTGGTTTCAGGAAATTTGATTGTGCGGTA
TATTATGCCCGCACATCTTGATTTGAAGAAGAATGCGAATCCAAAAACAG
CAATTCAACAAAAAGGTAATTTACTCAAATCACCATTAGAAGGGTCAGTA
GTCAACGAACATTTGGTAGGTTTCCATAACAACAACGGTAACCAACAACA
ACAGAGCTATGAAGTGAATGAACAACAACAACTCAATCACTATCTGATTT
ACCATTCAAATCTCTTACAAAGATTCCAAAACTCTTCAAGaattatCCAA
CAAAGACAACTTTTAGAACAGCAACAATGTCAAAATTCACCGATCCAATA
CATCAACCGGCAGAGTCCTTCAATTTCCATTGATTTACCAATCCAAATAC
TAACCAGTTGTATTGAATGGGCCAAAAGTGTGCCATTACTTAATGCTCTA
CCGGCAACCGACCAAATCTCCTTACTCTGTTCCAGCTGGAGTGAACTTTT
CATTCTAACCTCATCACAGTACTGCGCATGCCAGGGAATCAATGCTAAGA
CATTCTCAAGATTGACCAGAATCAACCGGCAATTCAAATCACCATCACAC
GAGCACTCCATGCAAATGTTGGAGGAGATAATCGATAAATTCAAATCTAT
GAATACAGACACTAATGAATTTTCATGTTTAAAAGCTTTGGCACTTTTTA
ATCCAGGTAAATATTTCATCCAAATCTTTAAATACAGACACAAATGAATT
TTCATGTTTGAAAGCGTTGGCACTTTTCAATCCagACACCCCAAGAATAA
GCAATGCAGCTCTGATCGAACATTTACAAGAAAAAGCCCAAACAGAACTT
GAAGATTACCTACGACAGAGCTCTTCTCATCCATTCTCGTGTCGCTACGG
AAAATTACTGCTTCGTTTACCGGCTCTATCACTTATACAAGCAGACACCA
TGGAAACAATGTTTTTCGACGGAAATCTTGGAAATTTTTCAGTAGTGAGT
TTTATCAGATCAATTATAACGTCGGCAAATGATACCAAGTTTGGAAGGCA
AATCAACTTCAATCAAAAGGATCTCGGCAACGCTCTAGCTTCCAATCTTT
CACATTAGTCTGGGTAGACAGGTTTAGaaggtttttttaattttagaccA
ACTTCGGGGAGGTATGTCTGCCTTGGTTCCTGCTTAGCATGTAAAAACAT
GTTCATCGCCACGAATTATCTATCGATACTTGAAGGTTTTAATTTTACAT
ATGTGTTGCgttttcatatcagacacatatttcatatcaggacagtgtct
gactattgttatattgtgctgatataagcaaagcaatatttttcttttcc
tctttctaaccaatcttgctccacatccgtatcaATTCAATGTGAAGTTT
GTAAATTACaagtgatgagtaagcaaacgataccactcttatgtaaaaac
aaaacctttaacttagCTAATGCAAGATATACAAATGGTAAACTTACCTC
AAATAACGGACGGATACCATCAAATTTATTCTACAATTCTTCTTCGCAAT
GTTAGCGTTTTAACTTTGCTGAGTAATTTGTCGAAATTGGCCTGAatcga
agaaaaagaaaacattgatataATAAGCCATATAATTTTAAGGATAATTA
CTGCAGCTTATGACTGAAAAACAAAAGAGAATTGTGGGAAAAATAAGTcg
aaagaaatttttgtcatggaagaatttgttgatttttttgcaaaagattC
TGTCTTCGATTGAACAGAGAAGAAGCTTGCTCAACCTCAtaaaatttcag
ttcatttcacCGGTAAAATTTCTTCGGaagcaaaaaagcaaaaaagtgGG
CGTGGCGGATacttaaaatttggacaaaagaaTCTGAACACAGTTTGTGA
AAAGTTCTCTTAGGGGCTTTCAATAACGCAAATTTTTCCTCGCCAAGTAT
TGATTAGTTTATTTTTCTCGGACAATACCCCTGACATACGTACGACCCTT
GCAAACGTAGTCGGGTGGGCGGGCGCTCAGCCGGATAGGATAGGTATAAA
GTTAAACATACCCTATTCGTCACATAGAATCTTATTTAGAAAACTCTATA
AATATTATACATTATACGGaagatagaaaatatttttgattatatttttg
taataaaGAAATCTATATTATTTTTGcgaataaatttatttttttaaatt
gaaaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000345:88087..97655-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019991 ID=TCONS_00019991|Name=TCONS_00019991|organism=Clytia hemisphaerica|type=transcript|length=9569bp|location=Sequence derived from alignment at sc0000345:88087..97655- (Clytia hemisphaerica)
TGTTGGTAAAAACAGGGTCATTTAGTTTGATACCGTAAGAGGAAATAAAG
ACCCTGGTTTTTTGTGTTGTTGTTTTTTCTGGCAAGTCTGATTGAAAATC
TGTTAACCTTGATAAAGTAAAGAAGCAAGTTTTTTTATTCAATGAGCTGA
AGTAAAGTTTCCGGGTTTGTTTCTCGAGTAAAACAAATTTATCCACGAGA
AAGCTTCTGATGAGGAAGTGATTGGTTTCAGGAAATTTGATTGTGCGGTA
TATTATGCCCGCACATCTTGATTTGAAGAAGAATGCGAATCCAAAAACAG
GTAAGCTAAGAAGTCTTCAAGAAAGAAAATACCTTGAAGGAAGTAATTTA
ATTTGAAGGATGTTGGATATTTTTGGCAAAAAAACCGTCATTAAACAGGC
AAAAAACCTGAAATATCACCAAAGCTGCCGATTCATTCAAATTTTCTTTC
CGTCAAAATTTCTTCCTTCTTAAGGTAATTTGTATTTTGTAAGTCCATGC
GTCGTTCCAACTTGTTTTAACTAAACATTCATGGAATTCCTACTAAAATA
CTTTTAAAGCCCTCAAATAACATCACTCCCAAAATTACAAAACCCAAGCA
CAGAAACCAGATCCGATTCCTCGAACCCTGGTCTGACAATGTATTGTTTT
AGCTTTTTGTTCAATTTTCTATTGTTAGAAACAAAAGACAAGTCGCGATT
TGCATACTTTTTTATCACGTTACCAAAATCTCATCTTGGGATTGGTCTAT
TTTCTAATCACGTGATAAAAAAATTTGCAAAATAAATCGATTTTGGTAGG
AAAGCTCCATTTTTTAGCAATAAGAAGAGACAAAAGCCTTCCAGACCAGT
GTTATTATACTGACCATGATTTAACCTCTCAATCTCACGTTAAAGTCAAT
CTCTTTTCCTATGCAATCCCTAAAAAAAACCCTAAAAATTCCGTACTCCA
AAAATACTTCTCATTCGCACTTATCATGAGATAAATGAAATTTTTTTTTT
TTCAATTGGTTAACAATACCACGTTGAAAACGATTATTAAATACACCCGC
TTCTCACAGACCCGGTAGGATTTCTTCAGCCAGTGGGGATTAAAATAACG
GACTAACAATCGACGGGGATTAAAATTCCATATTCTTTACTGCTGTGGAT
TTCAATTCTTTTGTTTTCGAGTCAGAAGATTCAGTGGGGATAGGAAAAAT
AGCACAATATTTTTCAGTGAGGATTGATTTATTTGATTATTTTCAATGGG
GACAAAATTTAGAGGATAATTTTCCACCGGGGACGATATTTTGACCAATT
CTTCCAGTGGGAAGGGGTCCCAGTGGGTCTGTGAGAAGGGGGTGTTTAAA
AACATTTTCAAGAAGTGCAAAAGGATTCAGCCTTACAATAATTTCTTTAC
TTCTCTCTTGTTTCTTAGCAATTCAACAAAAAGGTAATTTACTCAAATCA
CCATTAGAAGGGTCAGTAGTCAACGAACATTTGGTAGGTTTCCATAACAA
CAACGGTAACCAACAACAACAGAGCTATGAAGTGAATGAACAACAACAAC
TCAATCACTATCTGATTTACCATTCAAATCTCTTACAAAGATTCCAAAAC
TCTTCAAGGTAAGCACGATTTGCCAGCATGACAATCGGTAATTTCCGGAA
GGGAATTTTCAAAACTTAGTATCTTTCTTTCTCACAGCCCCGGTGGAAGT
TTTTTCCCTCAGTGGGGATAAAAATTTCTATTGAAATCCCACTGGCGACG
GAAATTCTATTGTTTCAAGCCTAAAAGTTCCGGTGGGGATGGTTCTGGAT
TGCAAGTTTCTTCATTGAATTTTAAGTGGGGATAAAAACAAAGTTAATTT
CTAGTGGCGGGCTGAAATTAATTGTAGGGTATTTTTTCCACCGGGGACAA
AATTTTGGGCGTATTTTCCGGTGGGGCTGGGGTCCCAGCGGGTCTGTGAC
ACAGGGTGTTTTTTCTTGGTAATCAAATCAGTTCAGTTTTACACACTCCT
TGTTCAACTATAAACCCTAATAATTCTAATATTGGCTAAATGCAATAATC
ATCGGAGATTTCCAGTTTAACACTAGTCACTGCTCAATATATTGTCTGTC
TAATTCGACCTTTAAAGGTTTTATTTCTACATAAGTGCTTCCGTTTCATA
TCAGAGACATATTTCATATCAGGACGGTGTCTGCTTGTTGTTATATTATG
CTGATATAAGCAAAAAAATGTTTTTCTTTCCCTTTTTCTGACCATTCTTG
CTCCAAATCCGAGTCAATCAAATGTGAAAAAGCTTATGAATTAAAATTGC
TGAGTAAGCAAACGATGTCACTCTTATTTAAAAACAAAACCTTTAAGGGG
ACTTGGATTTTCATTGTCTGTGCACAGACCCAGTATATGGCTAATTTCAA
AATTCATTGCCGTAGAGTTACCACGAAGCGATAAACGTAAGATACAGTCT
GGTACAGAGTAGGATTTTCATCGAGTGTGTCGTATAGTAGGCGAATGTGA
AAAACCTTTTAAAATGCCAGAAATCGAATTAGAGAGAGCGAGAGAGAGAG
AGAGAGAGAGAGAGAGTTTCCAAATACTGAGGAAGTAAAAATAAAAATTG
AAATTGATTCTTTTTAATTTTTTTCAGAATTATCCAACAAAGACAACTTT
TAGAACAGCAACAATGTCAAAATTCACCGATCCAATACATCAACCGGCAG
AGTCCTTCAATTTCCATTGATTTACCAATCCAAATACTAACCAGTTGTAT
TGAATGGGCCAAAAGTGTGCCATTACTTAATGGTAGGTTTACTACATGTT
TTCTTTATAACAACAAACTACATAAGAACATAAGGCTTCGACGCAAATTT
TTTTCCGTAGACGGGCGGAAATATCTTTAATGTTCGGAAATATCATAGCG
TAAAGGTCGGAAATATCCAAAACTCTAAAAATTTGAAAATTTAATGGTCG
GAAATATCCCGCGCTTTTAAAAATGCTTCATCAGCAAAAAAATGTAAACA
AAGATNATTTTGGAGGTGTAAGCCCTAAATATGATGACGACGGTACGGAA
ATTAACAAAGAAAGACAGACAACACAGCTGATGTTCTGTTCTTTGTGACA
CGAATTGATGATGAAAGCGATTTAGATGATGATTGTGAGTGATGGGGAAG
ATATCAGAAACATTTTTGATGTTCTCAATGACAAGGTGACGACGAAGATG
AATAAGAGATTTACACGTTTTGTCTGTATTTCGTTGGAAATTCTTTAGTT
CGTTCTGTCTCTACAAGGAAAAAATCATAACATTTTTTTTTTGGGGGGGG
GCGCATTTATTAATTTCGCATTAATTTATTCTCGCATTAAGTCCAATCTG
GATCAACTATCAGCAGCTTCTCTTTTATTGCTTTCTTGAAAGGTTTCCCT
TCATTGTGGAAGCTGATAGGCTTGTCCAAGTTTTTTACTTTCGGTTTTAA
ACCATTGCTGATCTCATCAATCTATGCTATGATTTGATTGCTTCTGCAAA
AACCTTTAGGACTTGACTGTGACGTCACAGTGATATCCATCATGGAAGTC
TATCGTGGCTTGGATCAAGAGATTTAAGTTTTGGTCTTTCATACTTCTAT
TGTGGCGATTCTATAGAGGTTTTGGGTTTCGGATTTGACGATCTCACTTT
TAGTGTAAAGATTGGAATACTGCTGAAATCGATAACTTGATGATCAAAGC
ATTTTTAAAAGCGCGGGATATTTCCGACCATCAAATGATGTTTCCGACCA
TTAAATTTTCAAATTTTCAGAGTTTTGGATATTTCCGACCATCAAATGAT
ATTTCCGACCATTACGTTATGATATTTCCGACCATTAAAGATATTTCCAC
CCGTCTACGGAAAAAAAATTTGCGGCTTCGACGGCCAAAATGTTTACAAC
AAGTTTAGAACATTTCAAGGTTTTACGGAACCTAAAACACTCGATTTCTG
AGGAAAATGGGTAAAAATGGTCAAAAATTGGTGAAAATAAGAACATGTTA
AGAACATTTTTAGGCTTAAATCTCAACAAGTTAAGAACATTCAAAATTTT
TTGATGTTCTCTTAAAAAAAAAGAGCATGTACACATTTCGCCAAATCTTC
TTTGTACTTCGTCTTCATTTTGTTTACGTTCATTTTGATTTTCTTGTTTT
TAGGCCTTTTTGCTTAAATATTTTTAAAATGTTCTTATTTTCACCATTTT
GTGAGTATTTTTGTCTCCGAAGCCTTAAAATGTTCTCAAAGTGTTCATGG
TATTTCGGCCATCGAAACCTTATGTTCTTATATAGTTTGTTCTTATAAAA
AACATCCCAAATAATCACATGTTATCTCAACTTTCTCAAACACATGACCC
AATAAGGGCACCAGAGCCTCACTGGTCAAGGATATAAAATTTAATTTTTC
AATATCGAGAAAAAAAGAACGAATTTACAATTGCTACAAAGTGTTTCATG
CTGACGCAATCTTCAGGCAATGCAATGTATTGTAGATTTATATTTTAAAT
CTTTAAATATGATTTAAAAAAAGTTGAAGTAATATACTTTTTATAATTTC
AAAATTTTGAAATAAATTAGGGACATGTTTTTTTTTTTTGACTGTACCAA
AATGCCGATTTTCAACCAACCCGGTTCAAATCGGCACTAACAGAGACAGC
TGAACCCTTCCTTATCGTTATTCAAAAATAAGAAAATAGATTAGTAGCTC
TGTCCGATACTTTTTGTCCGATCTTAATAGCTTTTATGGAACTTAAGATA
TCGCTTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCAAATTG
ATCATTTTTGAAATCTAGGTGCTAATTCTAATCGTATATATTTTCCTGAC
AAGTCTATCTATCGGGGAGGTGATTTGAGATTTTTGTTTAGCTGATAAGA
AAGGAACGAACTAAAGAAAACGGAAATTGTTAAAATGAGTGAAAAATTAT
TAAAAAAGTCCTTTGTTTGTTTTGATCATAACTCACTCCGGCCTTTAAAA
AATTACTCCTCAGGCTATTTTATGATTTTAGGCTACCTCAGGAATGCATA
GAAACCTCCTCAGGACCGAATAATACCGAGTTAATGTATTTGCACTTTGG
AGGACGGTAGAGTGACTGAAGCGATTTGGAAAAACCCGCAATTCCACCCC
GCAAAATCGAGGACCGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGT
CAGGATCTACTCAAAATAGAACCTTACCGTCTCCGTCGCTGAAAAACACA
CATACATAAACTCGCTAATGAGTCATGGAGTGAGATATGATCCAAAACAC
TCCAGGATTAATTAATCCTGAAATACTCCGAATTTTGAAATTTCAAATAG
CTCATTTTAAAGCCCTTCCCAAATTTCAATACATATCAAAATTTTGGGAA
AATTCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAC
ATGTCCTTAGACAATTTTTGAATTTGTTCTACAAAGTTACCACTCTTTAA
AATGGTGTTCAACAACAATATATAAATATGATTTCAATCATCTTTATTTA
CAGCTCTACCGGCAACCGACCAAATCTCCTTACTCTGTTCCAGCTGGAGT
GAACTTTTCATTCTAACCTCATCACAGTACTGCGCATGCCAGGGAATCAA
TGCTAAGACATTCTCAAGATTGACCAGAATCAACCGGCAATTCAAATCAC
CATCACACGAGCACTCCATGCAAATGTTGGAGGAGATAATCGATAAATTC
AAATCTATGAATACAGACACTAATGAATTTTCATGTTTAAAAGCTTTGGC
ACTTTTTAATCCAGGTAAATATTTCATCCAAATCTTTAAATACAGACACA
AATGAATTTTCATGTTTGAAAGCGTTGGCACTTTTCAATCCAGGTAAATA
TTTCAAAACATCGAACAATTAAATTGTGAATTTCTTATCTACCGATCGAT
TACTTCCATTGTACCCACTATTTTTACAAAATTTAAGGCTCGATCCATTT
TACTAAGGAACCACAGTAAACTCTCACTTACTCGAACTTCTATTATTTGA
ATATTTCTGTAATTCGAATTTCCAGTCTCCAACAAGACACCCCTGTCTCT
GTGCCCCAGTGGGTGTTGATTACCCAGTGGGGTGAGAATCAAAAAACATG
AAATTCACTGGGGTGAAAAATATTCTTTCAAATATTGAGTGGGGTGGCGA
AAATTTCCTTGACATTCACTGGGGTGAGAAAGAATTTTTTGCATGAGCTA
AATTTTGGTTAGCCTGTGTGTTAGACTGTAGACCGCTTAATTTTATCGTG
TTTTAACGATATAAGGTACTGGCTAACTTTTGGTTTAGTGCTAGTAAAAA
TCTGCTTCTTACATGCTACTAAATATAACTAGGAATATCATCTTGATCAG
ATGGATCTATTCTTACACTGTAACAGGAAATGTAATGAGGTCTGGGGGAA
GGGGCTATAGAGGAGCAGTACGTTATATCAAATTTTATGAACTCTGGAAC
CTAGTAATGTTTAGTCAACATGATTTAAGTAGAGGTCTTTCTTTCAGTAT
TTACGCAAGTGAGAAAGCCTCTCGAAAACCTTTCAGGCTATAACCTAGCT
TTAAAGAAAGAAAGGTACAAGTACAACTGTTTGCGCTGACAGAGAAATTT
TTGATTTTCAACCCCTCTCTTTTGGCATTTTCTACGTTTTAAACGTAGAC
CATGACATAGAAGTCGGGTTAAATACAGTTAATATATTGAAGTGGATTTT
TTTGGCTTTTTCGGATATTTCACCTTTAAAGAAGGTGAAGGAGAAAATTC
TAGTGGGGTGATTTTTTGAAAGAGAAGTTCTACTGGGGTACGTTAAAATA
AGGGCAATTCGAGTGGGGTATGTGTAAACTTTTTATCATTTTCAATGGGG
TGTTTTTTTACTACAACATTCCAGTGGGGTGAGTGATTTTTCCAGTGGGG
CTGAAAAATGAGCCATTTTTGGAAAAAGATTTCACTGGGGTGGCCAGTGG
GGTGGATCCCACTGGGTCACAGAGGCAGGGGTGTAACAAGAAGAAACCCT
CTTTCTATTCAGGATATGCACCATTGATTACAATGTCTTCCACGTACCCA
ACAACTGTTTGGTTGAAAGTAAGTGACGTATTGACTGATTTTACGTCACT
TAAAATCATCTATTGGTTCCATGATGTAATGTCAGAAGACATTGCAATGG
TGCATATCATGAATAGTTTGAATTTCTCTGTAATTCGAACAGATATGATT
CCCCATTCGACTTCGAATCAATGAGGATCAACTGTGCTGTTCTTTCAACA
AATCGCTCGTGTGATTTTTTGACTTTTTCATCGGCAAAGTCAGCTCATAT
TAAAACATTTGATTAACAATTCCCAATAACAAACACAAAGGAATGATCCA
TGCTTAAAGATAATACAACCCATAATTTCTTCTCCTTTCTTTTAGACACC
CCAAGAATAAGCAATGCAGCTCTGATCGAACATTTACAAGAAAAAGCCCA
AACAGAACTTGAAGATTACCTACGACAGAGCTCTTCTCATCCATTCTCGT
GTCGCTACGGAAAATTACTGCTTCGTTTACCGGCTCTATCACTTATACAA
GCAGACACCATGGAAACAATGTTTTTCGACGGAAATCTTGGAAATTTTTC
AGTAGTGAGTTTTATCAGATCAATTATAACGTCGGCAAATGATACCAAGT
TTGGAAGGCAAATCAACTTCAATCAAAAGGATCTCGGCAACGCTCTAGCT
TCCAATCTTTCACATTAGTCTGGGTAGACAGGTTTAGAAGGTTTTTTTAA
TTTTAGACCAACTTCGGGGAGGTATGTCTGCCTTGGTTCCTGCTTAGCAT
GTAAAAACATGTTCATCGCCACGAATTATCTATCGATACTTGAAGGTTTT
AATTTTACATATGTGTTGCGTTTTCATATCAGACACATATTTCATATCAG
GACAGTGTCTGACTATTGTTATATTGTGCTGATATAAGCAAAGCAATATT
TTTCTTTTCCTCTTTCTAACCAATCTTGCTCCACATCCGTATCAATTCAA
TGTGAAGTTTGTAAATTACAAGTGATGAGTAAGCAAACGATACCACTCTT
ATGTAAAAACAAAACCTTTAACTTAGCTAATGCAAGATATACAAATGGTA
AACTTACCTCAAATAACGGACGGATACCATCAAATTTATTCTACAATTCT
TCTTCGCAATGTTAGCGTTTTAACTTTGCTGAGTAATTTGTCGAAATTGG
CCTGAATCGAAGAAAAAGAAAACATTGATATAATAAGCCATATAATTTTA
AGGATAATTACTGCAGCTTATGACTGAAAAACAAAAGAGAATTGTGGGAA
AAATAAGTCGAAAGAAATTTTTGTCATGGAAGAATTTGTTGATTTTTTTG
CAAAAGATTCTGTCTTCGATTGAACAGAGAAGAAGCTTGCTCAACCTCAT
AAAATTTCAGTTCATTTCACCGGTAAAATTTCTTCGGAAGCAAAAAAGCA
AAAAAGTGGGCGTGGCGGATACTTAAAATTTGGACAAAAGAATCTGAACA
CAGTTTGTGAAAAGTTCTCTTAGGGGCTTTCAATAACGCAAATTTTTCCT
CGCCAAGTATTGATTAGTTTATTTTTCTCGGACAATACCCCTGACATACG
TACGACCCTTGCAAACGTAGTCGGGTGGGCGGGCGCTCAGCCGGATAGGA
TAGGTATAAAGTTAAACATACCCTATTCGTCACATAGAATCTTATTTAGA
AAACTCTATAAATATTATACATTATACGGAAGATAGAAAATATTTTTGAT
TATATTTTTGTAATAAAGAAATCTATATTATTTTTGCGAATAAATTTATT
TTTTTAAATTGAAAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011229XLOC_011229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019991-exon-sc0000345-1575043694:97356..97655TCONS_00019991-exon-sc0000345-1575043694:97356..97655Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1575043694:96048..96237TCONS_00019991-exon-sc0000345-1575043694:96048..96237Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1575043694:94874..95028TCONS_00019991-exon-sc0000345-1575043694:94874..95028Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1575043694:91063..91402TCONS_00019991-exon-sc0000345-1575043694:91063..91402Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1575043694:88087..89510TCONS_00019991-exon-sc0000345-1575043694:88087..89510Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1510915933:97356..97655TCONS_00019991-exon-sc0000345-1510915933:97356..97655Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1510915933:96048..96237TCONS_00019991-exon-sc0000345-1510915933:96048..96237Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1510915933:94874..95028TCONS_00019991-exon-sc0000345-1510915933:94874..95028Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1510915933:91063..91402TCONS_00019991-exon-sc0000345-1510915933:91063..91402Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1510915933:88087..89510TCONS_00019991-exon-sc0000345-1510915933:88087..89510Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1491911889:97356..97655TCONS_00019991-exon-sc0000345-1491911889:97356..97655Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1491911889:96048..96237TCONS_00019991-exon-sc0000345-1491911889:96048..96237Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1491911889:94874..95028TCONS_00019991-exon-sc0000345-1491911889:94874..95028Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1491911889:91063..91402TCONS_00019991-exon-sc0000345-1491911889:91063..91402Clytia hemisphaericaexon
TCONS_00019991-exon-sc0000345-1491911889:88087..89510TCONS_00019991-exon-sc0000345-1491911889:88087..89510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:88087..97655 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.543787	0.567101	6.47186	6.01282	0.598189	0.637612	2.04429	2.82266	1.81577	1.27926	1.54754	5.72166	3.01606	2.24737	0	0.125571	1.71002	1.92295	0	0.976314	0	0.940109	0.244227	0.118635	0	0
Blast
[Close]
BLAST of TCONS_00019991 vs. Swiss-Prot (Human)
Match: COT1 (COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.123e-17
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:  922 KSLNTDTNEFSCLKALALFNPDTPRISNAALIEHLQEKAQTELEDYLR-QSSSHPFSCRYGKLLLRLPALSLIQADTMETMFFDGNLGNFSVVSFIRSIITSAN 1230
            K+L+ D+ E+SCLKA+ LF  D   +S+AA IE LQEK+Q  LE+Y+R Q  + P   R+GKLLLRLP+L  + +  +E +FF   +G   + + IR ++ S +
Sbjct:  310 KALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPS--RFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS 411
The following BLAST results are available for this feature:
BLAST of TCONS_00019991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COT14.123e-1743.27COUP transcription factor 1 OS=Homo sapiens GN=NR2... [more]
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