TCONS_00020051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020051
Unique NameTCONS_00020051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020051 ID=TCONS_00020051|Name=TCONS_00020051|organism=Clytia hemisphaerica|type=transcript|length=572bp
AAGCTAcggtgagtggtcctaaatcctacagccctgcctaattccgatcC
CCCAAATGTAAGGTTGGAAAGTTCAGCAAATCCCAAAaagaaattgcaat
ttttgcctgaaaattagatttttttctctaaaaatattgtaaattgCATA
GTTATCAAGTGTCTTGCATCCTGCAGGGCACGTACGACCTGTTGTCCCGC
TGTATGCCCCCTAAAATCCCAAGCTGAATTTTGCGCTCGCTTTGTTTGCA
TCTGATCACGCATTCGGAATTTTGAAACTTGGCAACTATGGATTTGTATC
AGTTGCTTGGATTGCAATGTAGATTCTGTGGTTGAGAAGAGTCAATCATT
TATTCTGTCATGAAGAATATTGACAGTCCTCTATTGAGAACAAACAATTA
CACCATATTAAAGGAAGATAAAATGTGTTTTTATTTCACTCTCAATTTTA
GGTGATTTCAATTCCTGAGTCTTATGAAAGTCTAGTAAATGTTGCATCCA
ATAAATTTGAGCAAAGaatatcaaaactttatttatCGGATGGATCATTA
GTGACCACCATCAACCTCATCA
Run BLAST on NCBI

transcript from alignment at sc0000348:242497..243068+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020051 ID=TCONS_00020051|Name=TCONS_00020051|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0000348:242497..243068+ (Clytia hemisphaerica)
AAGCTAcggtgagtggtcctaaatcctacagccctgcctaattccgatcC
CCCAAATGTAAGGTTGGAAAGTTCAGCAAATCCCAAAaagaaattgcaat
ttttgcctgaaaattagatttttttctctaaaaatattgtaaattgCATA
GTTATCAAGTGTCTTGCATCCTGCAGGGCACGTACGACCTGTTGTCCCGC
TGTATGCCCCCTAAAATCCCAAGCTGAATTTTGCGCTCGCTTTGTTTGCA
TCTGATCACGCATTCGGAATTTTGAAACTTGGCAACTATGGATTTGTATC
AGTTGCTTGGATTGCAATGTAGATTCTGTGGTTGAGAAGAGTCAATCATT
TATTCTGTCATGAAGAATATTGACAGTCCTCTATTGAGAACAAACAATTA
CACCATATTAAAGGAAGATAAAATGTGTTTTTATTTCACTCTCAATTTTA
GGTGATTTCAATTCCTGAGTCTTATGAAAGTCTAGTAAATGTTGCATCCA
ATAAATTTGAGCAAAGaatatcaaaactttatttatCGGATGGATCATTA
GTGACCACCATCAACCTCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011269XLOC_011269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020051-exon-sc0000348-1491911889:242497..243068TCONS_00020051-exon-sc0000348-1491911889:242497..243068Clytia hemisphaericaexon
TCONS_00020051-exon-sc0000348-1510915933:242497..243068TCONS_00020051-exon-sc0000348-1510915933:242497..243068Clytia hemisphaericaexon
TCONS_00020051-exon-sc0000348-1575043694:242497..243068TCONS_00020051-exon-sc0000348-1575043694:242497..243068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:242497..243068 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.776967	0.695814	0.186901	1.65817	0.467702	0.530777	0	0.796417	0.107027	0.788295	0.686872	0.323526	0.380419	0.889808	0.280654	0.345182	0.10384	0.465833	3.26104	1.17566	0.976628	1.69692	0.817993	1.24683	0.224517	0.933359	0.708606	0.199349	0.170775	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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