TCONS_00020054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020054
Unique NameTCONS_00020054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020054 ID=TCONS_00020054|Name=TCONS_00020054|organism=Clytia hemisphaerica|type=transcript|length=1048bp
ttTCATTTGAAGGTCAAGGCCCACAGTTATTGTTGGACAAGCTATGTTTG
TGCTCAAAAACTAaagCAGTCAAATCATCGTCTGATTGGATCACTCTCAA
TGTTGGTGGCAAGCTTTTCACTACCACAAGaaaCACTTTGACACGCTATC
CGGACACGATGTTAGCAAGAATGTTCAGCATATCAGAAACGTGGAAGAGT
GCTGTAGACGCGAATGGAGCTTATCTAATCGATCGAAGTCCAGAATATTT
TGAACCCATCCTCAATTTTCTTCGGCAAGGAATTCTCATAATAAACGAAG
GAGTAAATCAAAGGGGTGTTTTAGAAGAAGCTCGGTTCTTTGGATTGATT
GAAATCGTCAATGAGTTGGAATCTGAGTTGCAAACCATTGAACGACAGAA
GCAATCTGTTACACGAAGTGAATTTATGAGACTTTTAATGACAACTTCGA
ATGTTGATAAACTTCGATGTCAAGGTGTTGACTTGGCCGGAGCTGATTTA
TCTTACTTAGATTTGAGCTCAATCAATTTCAAACATGCCAACTTGTCAGG
AGCCAATTTAAAAGGTGCTTCTTTGGGTGGATGTCAATTCAATTTGGCTG
ATCTTTCGAATGCCTGTCTTGATGATGCCACTTTGGAAGGGGTTCAGATG
AAACGAGTGAACTTAGAAAGCGCGTCGCTCAAGAATTGCAAATTTGAAGC
TACGGGTACCAAGAACCAAAAGGCGAATTTAGAAGGTGCAAATTTGAAAG
AAGCCTCACTGGAAGGAAGTCAAATGAGCAATGCGTGTTTACGGTTAGCT
GTCTTAAAAGAAGCCAATATGCGAAACTGTGTATTGAGAGGTGCTACTTT
GGCTGGAGCGGATCTAGAAAATTGTGATTTAACGGGAGCGGACTTGGAAG
GAGCCAACCTGAGAGGAACGAACGTAGTGGGGACTATATTTTTAGATATT
GTGGCGCCTCTTCATATGGTCCAGTTCGAAGGTCCTCAGTCCTGAACATG
ACGCGATACGGAGGAAATTTCTTACCGAACGGACACATTTTCCAGCAA
Run BLAST on NCBI

protein sequence of TCONS_00020054-protein

>TCONS_00020054-protein ID=TCONS_00020054-protein|Name=TCONS_00020054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
SFEGQGPQLLLDKLCLCSKTKAVKSSSDWITLNVGGKLFTTTRNTLTRYP
DTMLARMFSISETWKSAVDANGAYLIDRSPEYFEPILNFLRQGILIINEG
VNQRGVLEEARFFGLIEIVNELESELQTIERQKQSVTRSEFMRLLMTTSN
VDKLRCQGVDLAGADLSYLDLSSINFKHANLSGANLKGASLGGCQFNLAD
LSNACLDDATLEGVQMKRVNLESASLKNCKFEATGTKNQKANLEGANLKE
ASLEGSQMSNACLRLAVLKEANMRNCVLRGATLAGADLENCDLTGADLEG
ANLRGTNVVGTIFLDIVAPLHMVQFEGPQS
Run BLAST on NCBI

transcript from alignment at sc0000348:244379..247613+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020054 ID=TCONS_00020054|Name=TCONS_00020054|organism=Clytia hemisphaerica|type=transcript|length=3235bp|location=Sequence derived from alignment at sc0000348:244379..247613+ (Clytia hemisphaerica)
ttTCATTTGAAGGTCAAGGCCCACAGTTATTGTTGGACAAGCTATGTTTG
TGCTCAAAAACTAaaggtaaataaattttgtaggaCCCAACATGTTGAac
ttccagaaaaaattaattctaaGAATATGTAAGAATGTGAATTGGTCTGG
AAGAAGTACTTGTAATTCATAAgaagaattttaaaagaaattttgatcAT
TATTTTCATTCTCGAATTCTTTTAGCAGTCAAATCATCGTCTGATTGGAT
CACTCTCAATGTTGGTGGCAAGCTTTTCACTACCACAAGGTAGAAAGTTT
ATCGCTTTCTTTTGGATTCTAAAGTattgctcaagttttttcccTACAAG
ATAAGCACtgcatttttggaaaagctttttttttgatacaattttaaTAC
TTTCCTTTATACTTTACTTTTATATTTATTCATATATTTACGACGTATGG
CattcttcttttttagaaaCACTTTGACACGCTATCCGGACACGATGTTA
GCAAGAATGTTCAGCATATCAGGTAATTTATTGTTAtatttattcgggtc
tgtaaattttcaaacgaagccaagaaggaagacaaaatggcgccaggtct
cttgagaagtaacaaagttaccttcttcagtacctttggaaaaaaggcta
tgtggctgaagttcgaaaggaatcttaacttttattacatggaatcatta
acaagatgttgtaatagttatttcAACATGAAAACagttttcagatttca
aaagtttaggcaaaaagaggtaccccataatctagcccaattggctaccc
cattggctaccctgctttttagaccaacccgatCGTGAGTGAGGTGAATG
GTGTGGCGGCCTTGTCATACAGTGTCACGCTTGAATACATATCTAATCCA
ATAAACTTCAGCTCTGTTCAGCTGCACGTTCAGTGCAgcaaaatcagcgg
aaaataacccatcatcatttttttattaccgaaattcaaaatgaattatT
GCAAAGAAATGCATACTTTTTCTCCTATAGAAACGTGGAAGAGTGCTGTA
GACGCGAATGGAGCTTATCTAATCGATCGAAGTCCAGAATATTTTGAACC
CATCCTCAATTTTCTTCGGCAAGGAATTCTCATAATAAACGAAGGAGTAA
ATCAAAGGGGTGTTTTAGAAGAAGCTCGGTTCTTTGGATTGATTGAAATC
GTCAATGAGTTGGAATCTGAGTTGCAAACCATTGAACGACAGAAGCAATC
TGTTACACGAAGTGAATTTATGAGACTTTTAATGACAACTTCGAATGTTG
ATAAACTTCGATGTCAAGGTGTTGACTTGGCCGGAGCTGATTTATCTTAC
TTAGATTTGAGCTCAATCAATTTCAAACATGCCAACTTGTCAGGAGCCAA
TTTAAAAGGTGCTTCTTTGGGTGGATGTCAATTCAATTTGGCTGATCTTT
CGAATGCCTGTCTTGATGTAAGTTTAGTCAGTCAGTCATTCACATGAAAT
TACCTATTCAGTTGGTAAGAATTATATAACAAACAGCCTCTGTACACCAC
AAACGTTACATCAACCAATATTATTAAAATTATCGTGCTTGTACACCACA
CGCTACTCGTTGTTTTGTTGTCGCAAAAAAAGAGCGAAGCAAGtgactat
tattattattagtggtcatccatatagtacgtacgcaaaatttttcaaat
attcgaTACCCCCTCCcaccttgtacgcagagaacaatataaatgacgtc
atttaaacaatagatgtacgcttttgctaagcccccctctccccccttca
ctgcgtacgtactatgtggatggcCCCTTATCGTGTTTGTTAGTAATTGG
AATATTGAGTTTCGAGTTCGATTTCTAAGCTTTTTAAAGGCTCTCCTGTT
TTGGTTCTAGGATGCCACTTTGGAAGGGGTTCAGATGAAACGAGTGAACT
TAGAAAGCGCGTCGCTCAAGAATTGCAAATTTGAAGCTACGGGTACCAAG
AACCAAAAGGCGAATTTAGAAGGTAACAATTTGTTTAATGAATATATCAT
CCTTTTTATTGCTCTCGATACGAAATCCTATTTTTCTTAGTCCACGTCAA
GTTGATTAGCGGAACAGCcaaatttttattctaattaGTAAAAGGAATTG
CCCGTAggcaaatattttcaaaaattaacgaTATTCAAAAGTCAAATTGG
TACGATTTAGGGGACCCTGTGCAAAGTTCCTTAGTCGAATCCACAAGAAA
ATTCTATCGGTTTCCATCAACTTCGATCATACTTAGAGTGACGTCATTTC
CTTCCATTGTTCTTTCATCTCAATGATCAGGTGCAAATTTGAAAGAAGCC
TCACTGGAAGGAAGTCAAATGAGCAATGCGTGTTTACGGTTAGCTGTCTT
AAAAGAAGCCAATATGCGAAACTGTGTATTGAGAGGTGCTACTTTGGCTG
GAGCGGATCTAGAAGTAGGACATTGCTGTACATATAATACAATCTATAtc
tacaatcaaagtcataatttttgagaaaaaaaggaaatcctcacgaaatc
ttacaaccacaaacgatttggtagtgctctaaattaggttggaagggtag
agttttaacaccttagaatctgaggatccaGAAGTCCAAGAAtagtccaa
tagggctcagaatatagcctgattaaccaaaattctcaatttattttgac
cgagattgtagAACAGGAACATGGTATCTTATATCCTTAGTGTCgttaga
aaaatctttttggacctaccattagattttttctgacttttggcACAAAG
TTGCAAATAGCAATAGCCGACATATAACAGAGCacgattttcaataaaat
cttttgtcaaatttttccgaaaaaaatatttttggttaaaATGCTGGAAA
TGACCGAGTTTTCCTATTTTGTGTACAAGAACAGTCATAGTAATAGCCGG
CGTAATCTAATAGTTAACAAAATGCACACCTTTAAATGAGACCATGACTT
GTAGTATTAgattttatgataaaaataataGTTTTGTATAAATCGTTTTT
CTTTAGAATTGTGATTTAACGGGAGCGGACTTGGAAGGAGCCAACCTGAG
AGGAACGAACGTAGTGGGGACTATATTTTTAGATATTGTGGCGCCTCTTC
ATATGGTCCAGTTCGAAGGTCCTCAGTCCTGAACATGACGCGATACGGAG
GAAATTTCTTACCGAACGGACACATTTTCCAGCAA

Coding sequence (CDS) from alignment at sc0000348:244379..247613+

>TCONS_00020054 ID=TCONS_00020054|Name=TCONS_00020054|organism=Clytia hemisphaerica|type=CDS|length=6951bp|location=Sequence derived from alignment at sc0000348:244379..247613+ (Clytia hemisphaerica)
TCATTTGAAGGTCAAGGCCCACAGTTATTGTTGGACAAGCTATGTTTGTG
CTCAAAAACTAaagCAGTCAAATCATCGTCTGATTGGATCACTCTCAATG
TTGGTGGCAAGCTTTTCACTACCACAAGaaaCACTTTGACACGCTATCCG
GACACGATGTTAGCAAGAATGTTCAGCATATCAGAAACGTGGAAGAGTGC
TGTAGACGCGAATGGAGCTTATCTAATCGATCGAAGTCCAGAATATTTTG
AACCCATCCTCAATTTTCTTCGGCAAGGAATTCTCATAATAAACGAAGGA
GTAAATCAAAGGGGTGTTTTAGAAGAAGCTCGGTTCTTTGGATTGATTGA
AATCGTCAATGAGTTGGAATCTGAGTTGCAAACCATTGAACGACAGAAGC
AATCTGTTACACGAAGTGAATTTATGAGACTTTTAATGACAACTTCGAAT
GTTGATAAACTTCGATGTCAAGGTGTTGACTTGGCCGGAGCTGATTTATC
TTACTTAGATTTGAGCTCAATCAATTTCAAACATGCCAACTTGTCAGGAG
CCAATTTAAAAGGTGCTTCTTTGGGTGGATGTCAATTCAATTTGGCTGAT
CTTTCGAATGCCTGTCTTGATGATGCCACTTTGGAAGGGGTTCAGATGAA
ACGAGTGAACTTAGAAAGCGCGTCGCTCAAGAATTGCAAATTTGAAGCTA
CGGGTACCAAGAACCAAAAGGCGAATTTAGAAGGTGCAAATTTGAAAGAA
GCCTCACTGGAAGGAAGTCAAATGAGCAATGCGTGTTTACGGTTAGCTGT
CTTAAAAGAAGCCAATATGCGAAACTGTGTATTGAGAGGTGCTACTTTGG
CTGGAGCGGATCTAGAAAATTGTGATTTAACGGGAGCGGACTTGGAAGGA
GCCAACCTGAGAGGAACGAACGTAGTGGGGACTATATTTTTAGATATTGT
GGCGCCTCTTCATATGGTCCAGTTCGAAGGTCCTCAGTCCTGATCATTTG
AAGGTCAAGGCCCACAGTTATTGTTGGACAAGCTATGTTTGTGCTCAAAA
ACTAaagCAGTCAAATCATCGTCTGATTGGATCACTCTCAATGTTGGTGG
CAAGCTTTTCACTACCACAAGaaaCACTTTGACACGCTATCCGGACACGA
TGTTAGCAAGAATGTTCAGCATATCAGAAACGTGGAAGAGTGCTGTAGAC
GCGAATGGAGCTTATCTAATCGATCGAAGTCCAGAATATTTTGAACCCAT
CCTCAATTTTCTTCGGCAAGGAATTCTCATAATAAACGAAGGAGTAAATC
AAAGGGGTGTTTTAGAAGAAGCTCGGTTCTTTGGATTGATTGAAATCGTC
AATGAGTTGGAATCTGAGTTGCAAACCATTGAACGACAGAAGCAATCTGT
TACACGAAGTGAATTTATGAGACTTTTAATGACAACTTCGAATGTTGATA
AACTTCGATGTCAAGGTGTTGACTTGGCCGGAGCTGATTTATCTTACTTA
GATTTGAGCTCAATCAATTTCAAACATGCCAACTTGTCAGGAGCCAATTT
AAAAGGTGCTTCTTTGGGTGGATGTCAATTCAATTTGGCTGATCTTTCGA
ATGCCTGTCTTGATGATGCCACTTTGGAAGGGGTTCAGATGAAACGAGTG
AACTTAGAAAGCGCGTCGCTCAAGAATTGCAAATTTGAAGCTACGGGTAC
CAAGAACCAAAAGGCGAATTTAGAAGGTGCAAATTTGAAAGAAGCCTCAC
TGGAAGGAAGTCAAATGAGCAATGCGTGTTTACGGTTAGCTGTCTTAAAA
GAAGCCAATATGCGAAACTGTGTATTGAGAGGTGCTACTTTGGCTGGAGC
GGATCTAGAAAATTGTGATTTAACGGGAGCGGACTTGGAAGGAGCCAACC
TGAGAGGAACGAACGTAGTGGGGACTATATTTTTAGATATTGTGGCGCCT
CTTCATATGGTCCAGTTCGAAGGTCCTCAGTCCTGATCATTTGAAGGTCA
AGGCCCACAGTTATTGTTGGACAAGCTATGTTTGTGCTCAAAAACTAaag
CAGTCAAATCATCGTCTGATTGGATCACTCTCAATGTTGGTGGCAAGCTT
TTCACTACCACAAGaaaCACTTTGACACGCTATCCGGACACGATGTTAGC
AAGAATGTTCAGCATATCAGAAACGTGGAAGAGTGCTGTAGACGCGAATG
GAGCTTATCTAATCGATCGAAGTCCAGAATATTTTGAACCCATCCTCAAT
TTTCTTCGGCAAGGAATTCTCATAATAAACGAAGGAGTAAATCAAAGGGG
TGTTTTAGAAGAAGCTCGGTTCTTTGGATTGATTGAAATCGTCAATGAGT
TGGAATCTGAGTTGCAAACCATTGAACGACAGAAGCAATCTGTTACACGA
AGTGAATTTATGAGACTTTTAATGACAACTTCGAATGTTGATAAACTTCG
ATGTCAAGGTGTTGACTTGGCCGGAGCTGATTTATCTTACTTAGATTTGA
GCTCAATCAATTTCAAACATGCCAACTTGTCAGGAGCCAATTTAAAAGGT
GCTTCTTTGGGTGGATGTCAATTCAATTTGGCTGATCTTTCGAATGCCTG
TCTTGATGATGCCACTTTGGAAGGGGTTCAGATGAAACGAGTGAACTTAG
AAAGCGCGTCGCTCAAGAATTGCAAATTTGAAGCTACGGGTACCAAGAAC
CAAAAGGCGAATTTAGAAGGTGCAAATTTGAAAGAAGCCTCACTGGAAGG
AAGTCAAATGAGCAATGCGTGTTTACGGTTAGCTGTCTTAAAAGAAGCCA
ATATGCGAAACTGTGTATTGAGAGGTGCTACTTTGGCTGGAGCGGATCTA
GAAAATTGTGATTTAACGGGAGCGGACTTGGAAGGAGCCAACCTGAGAGG
AACGAACGTAGTGGGGACTATATTTTTAGATATTGTGGCGCCTCTTCATA
TGGTCCAGTTCGAAGGTCCTCAGTCCTGATCATTTGAAGGTCAAGGCCCA
CAGTTATTGTTGGACAAGCTATGTTTGTGCTCAAAAACTAaagCAGTCAA
ATCATCGTCTGATTGGATCACTCTCAATGTTGGTGGCAAGCTTTTCACTA
CCACAAGaaaCACTTTGACACGCTATCCGGACACGATGTTAGCAAGAATG
TTCAGCATATCAGAAACGTGGAAGAGTGCTGTAGACGCGAATGGAGCTTA
TCTAATCGATCGAAGTCCAGAATATTTTGAACCCATCCTCAATTTTCTTC
GGCAAGGAATTCTCATAATAAACGAAGGAGTAAATCAAAGGGGTGTTTTA
GAAGAAGCTCGGTTCTTTGGATTGATTGAAATCGTCAATGAGTTGGAATC
TGAGTTGCAAACCATTGAACGACAGAAGCAATCTGTTACACGAAGTGAAT
TTATGAGACTTTTAATGACAACTTCGAATGTTGATAAACTTCGATGTCAA
GGTGTTGACTTGGCCGGAGCTGATTTATCTTACTTAGATTTGAGCTCAAT
CAATTTCAAACATGCCAACTTGTCAGGAGCCAATTTAAAAGGTGCTTCTT
TGGGTGGATGTCAATTCAATTTGGCTGATCTTTCGAATGCCTGTCTTGAT
GATGCCACTTTGGAAGGGGTTCAGATGAAACGAGTGAACTTAGAAAGCGC
GTCGCTCAAGAATTGCAAATTTGAAGCTACGGGTACCAAGAACCAAAAGG
CGAATTTAGAAGGTGCAAATTTGAAAGAAGCCTCACTGGAAGGAAGTCAA
ATGAGCAATGCGTGTTTACGGTTAGCTGTCTTAAAAGAAGCCAATATGCG
AAACTGTGTATTGAGAGGTGCTACTTTGGCTGGAGCGGATCTAGAAAATT
GTGATTTAACGGGAGCGGACTTGGAAGGAGCCAACCTGAGAGGAACGAAC
GTAGTGGGGACTATATTTTTAGATATTGTGGCGCCTCTTCATATGGTCCA
GTTCGAAGGTCCTCAGTCCTGATCATTTGAAGGTCAAGGCCCACAGTTAT
TGTTGGACAAGCTATGTTTGTGCTCAAAAACTAaagCAGTCAAATCATCG
TCTGATTGGATCACTCTCAATGTTGGTGGCAAGCTTTTCACTACCACAAG
aaaCACTTTGACACGCTATCCGGACACGATGTTAGCAAGAATGTTCAGCA
TATCAGAAACGTGGAAGAGTGCTGTAGACGCGAATGGAGCTTATCTAATC
GATCGAAGTCCAGAATATTTTGAACCCATCCTCAATTTTCTTCGGCAAGG
AATTCTCATAATAAACGAAGGAGTAAATCAAAGGGGTGTTTTAGAAGAAG
CTCGGTTCTTTGGATTGATTGAAATCGTCAATGAGTTGGAATCTGAGTTG
CAAACCATTGAACGACAGAAGCAATCTGTTACACGAAGTGAATTTATGAG
ACTTTTAATGACAACTTCGAATGTTGATAAACTTCGATGTCAAGGTGTTG
ACTTGGCCGGAGCTGATTTATCTTACTTAGATTTGAGCTCAATCAATTTC
AAACATGCCAACTTGTCAGGAGCCAATTTAAAAGGTGCTTCTTTGGGTGG
ATGTCAATTCAATTTGGCTGATCTTTCGAATGCCTGTCTTGATGATGCCA
CTTTGGAAGGGGTTCAGATGAAACGAGTGAACTTAGAAAGCGCGTCGCTC
AAGAATTGCAAATTTGAAGCTACGGGTACCAAGAACCAAAAGGCGAATTT
AGAAGGTGCAAATTTGAAAGAAGCCTCACTGGAAGGAAGTCAAATGAGCA
ATGCGTGTTTACGGTTAGCTGTCTTAAAAGAAGCCAATATGCGAAACTGT
GTATTGAGAGGTGCTACTTTGGCTGGAGCGGATCTAGAAAATTGTGATTT
AACGGGAGCGGACTTGGAAGGAGCCAACCTGAGAGGAACGAACGTAGTGG
GGACTATATTTTTAGATATTGTGGCGCCTCTTCATATGGTCCAGTTCGAA
GGTCCTCAGTCCTGATCATTTGAAGGTCAAGGCCCACAGTTATTGTTGGA
CAAGCTATGTTTGTGCTCAAAAACTAaagCAGTCAAATCATCGTCTGATT
GGATCACTCTCAATGTTGGTGGCAAGCTTTTCACTACCACAAGaaaCACT
TTGACACGCTATCCGGACACGATGTTAGCAAGAATGTTCAGCATATCAGA
AACGTGGAAGAGTGCTGTAGACGCGAATGGAGCTTATCTAATCGATCGAA
GTCCAGAATATTTTGAACCCATCCTCAATTTTCTTCGGCAAGGAATTCTC
ATAATAAACGAAGGAGTAAATCAAAGGGGTGTTTTAGAAGAAGCTCGGTT
CTTTGGATTGATTGAAATCGTCAATGAGTTGGAATCTGAGTTGCAAACCA
TTGAACGACAGAAGCAATCTGTTACACGAAGTGAATTTATGAGACTTTTA
ATGACAACTTCGAATGTTGATAAACTTCGATGTCAAGGTGTTGACTTGGC
CGGAGCTGATTTATCTTACTTAGATTTGAGCTCAATCAATTTCAAACATG
CCAACTTGTCAGGAGCCAATTTAAAAGGTGCTTCTTTGGGTGGATGTCAA
TTCAATTTGGCTGATCTTTCGAATGCCTGTCTTGATGATGCCACTTTGGA
AGGGGTTCAGATGAAACGAGTGAACTTAGAAAGCGCGTCGCTCAAGAATT
GCAAATTTGAAGCTACGGGTACCAAGAACCAAAAGGCGAATTTAGAAGGT
GCAAATTTGAAAGAAGCCTCACTGGAAGGAAGTCAAATGAGCAATGCGTG
TTTACGGTTAGCTGTCTTAAAAGAAGCCAATATGCGAAACTGTGTATTGA
GAGGTGCTACTTTGGCTGGAGCGGATCTAGAAAATTGTGATTTAACGGGA
GCGGACTTGGAAGGAGCCAACCTGAGAGGAACGAACGTAGTGGGGACTAT
ATTTTTAGATATTGTGGCGCCTCTTCATATGGTCCAGTTCGAAGGTCCTC
AGTCCTGATCATTTGAAGGTCAAGGCCCACAGTTATTGTTGGACAAGCTA
TGTTTGTGCTCAAAAACTAaagCAGTCAAATCATCGTCTGATTGGATCAC
TCTCAATGTTGGTGGCAAGCTTTTCACTACCACAAGaaaCACTTTGACAC
GCTATCCGGACACGATGTTAGCAAGAATGTTCAGCATATCAGAAACGTGG
AAGAGTGCTGTAGACGCGAATGGAGCTTATCTAATCGATCGAAGTCCAGA
ATATTTTGAACCCATCCTCAATTTTCTTCGGCAAGGAATTCTCATAATAA
ACGAAGGAGTAAATCAAAGGGGTGTTTTAGAAGAAGCTCGGTTCTTTGGA
TTGATTGAAATCGTCAATGAGTTGGAATCTGAGTTGCAAACCATTGAACG
ACAGAAGCAATCTGTTACACGAAGTGAATTTATGAGACTTTTAATGACAA
CTTCGAATGTTGATAAACTTCGATGTCAAGGTGTTGACTTGGCCGGAGCT
GATTTATCTTACTTAGATTTGAGCTCAATCAATTTCAAACATGCCAACTT
GTCAGGAGCCAATTTAAAAGGTGCTTCTTTGGGTGGATGTCAATTCAATT
TGGCTGATCTTTCGAATGCCTGTCTTGATGATGCCACTTTGGAAGGGGTT
CAGATGAAACGAGTGAACTTAGAAAGCGCGTCGCTCAAGAATTGCAAATT
TGAAGCTACGGGTACCAAGAACCAAAAGGCGAATTTAGAAGGTGCAAATT
TGAAAGAAGCCTCACTGGAAGGAAGTCAAATGAGCAATGCGTGTTTACGG
TTAGCTGTCTTAAAAGAAGCCAATATGCGAAACTGTGTATTGAGAGGTGC
TACTTTGGCTGGAGCGGATCTAGAAAATTGTGATTTAACGGGAGCGGACT
TGGAAGGAGCCAACCTGAGAGGAACGAACGTAGTGGGGACTATATTTTTA
GATATTGTGGCGCCTCTTCATATGGTCCAGTTCGAAGGTCCTCAGTCCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011270XLOC_011270Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020054-proteinTCONS_00020054-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020054-exon-sc0000348-1491911889:244379..244444TCONS_00020054-exon-sc0000348-1491911889:244379..244444Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:244379..244444TCONS_00020054-exon-sc0000348-1510915933:244379..244444Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:244379..244444TCONS_00020054-exon-sc0000348-1575043694:244379..244444Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1491911889:244604..244667TCONS_00020054-exon-sc0000348-1491911889:244604..244667Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:244604..244667TCONS_00020054-exon-sc0000348-1510915933:244604..244667Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:244604..244667TCONS_00020054-exon-sc0000348-1575043694:244604..244667Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1491911889:244845..244900TCONS_00020054-exon-sc0000348-1491911889:244845..244900Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:244845..244900TCONS_00020054-exon-sc0000348-1510915933:244845..244900Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:244845..244900TCONS_00020054-exon-sc0000348-1575043694:244845..244900Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1491911889:245409..245845TCONS_00020054-exon-sc0000348-1491911889:245409..245845Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:245409..245845TCONS_00020054-exon-sc0000348-1510915933:245409..245845Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:245409..245845TCONS_00020054-exon-sc0000348-1575043694:245409..245845Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1491911889:246289..246400TCONS_00020054-exon-sc0000348-1491911889:246289..246400Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:246289..246400TCONS_00020054-exon-sc0000348-1510915933:246289..246400Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:246289..246400TCONS_00020054-exon-sc0000348-1575043694:246289..246400Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1491911889:246709..246842TCONS_00020054-exon-sc0000348-1491911889:246709..246842Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:246709..246842TCONS_00020054-exon-sc0000348-1510915933:246709..246842Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:246709..246842TCONS_00020054-exon-sc0000348-1575043694:246709..246842Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1491911889:247435..247613TCONS_00020054-exon-sc0000348-1491911889:247435..247613Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1510915933:247435..247613TCONS_00020054-exon-sc0000348-1510915933:247435..247613Clytia hemisphaericaexon
TCONS_00020054-exon-sc0000348-1575043694:247435..247613TCONS_00020054-exon-sc0000348-1575043694:247435..247613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:244379..247613 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2364	1.21802	0.590443	1.9297	0	0	0	1.23097	4.58878	6.30949	12.0082	2.20721	3.8026	1.24062	4.22152	6.08821	1.92553e-07	2.18804	4.60268	3.34686	2.26942	4.65289	2.82641	6.5562	1.71541	0	4.17086	1.50486	4.99105	2.681
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR0016465peptide_repeat
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051260 protein homooligomerization
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00020054 vs. Swiss-Prot (Human)
Match: KCTD9 (BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 3.920e-106
Identity = 167/301 (55.48%), Postives = 208/301 (69.10%), Query Frame = 3 
Query:   81 SDWITLNVGGKLFTTTRNTLT-RYPDTMLARMFSISETWKSAVDANGAYLIDRSPEYFEPILNFLRQGILIINEGVNQRGVLEEARFFGLIEIVNELESELQTIE--RQKQSVTRSEFMRLLMTTSNVDKLRCQGVDLAGADLSYLDLSSINFKHANLSGANLKGASLGGCQFNLADLSNACLDDATLEGVQMKRVNLESASLKNCKFEATGTKNQKANLEGANLKEASLEGSQMSNACLRLAVLKEANMRNCVLRGATLAGADLENCDLTGADLEGANLRGTNVVGTIFLDIVAPLHMVQ 974
            +DW+TLNVGG+ FTTTR+TL  + PD+MLA MF     W +  D  GA+LIDRSPEYFEPILN+LR G LI+N+G+N  GVLEEARFFG+  ++  LE  ++  +       ++R EF+R L+ T    +LRCQG++ +GADLS LDL  INFK ANLS  NL  A+L       ADLS + LD A L+GV+M   N E ASLK C FE       KANLEGANLK   +EGSQM+   LR+A LK A ++NC LRGATLAG DLENCDL+G DL+ ANLRG+NV G IF +++ PLHM Q
Sbjct:   88 TDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFE--DPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQ 386
The following BLAST results are available for this feature:
BLAST of TCONS_00020054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCTD93.920e-10655.48BTB/POZ domain-containing protein KCTD9 OS=Homo sa... [more]
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