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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020063 ID=TCONS_00020063|Name=TCONS_00020063|organism=Clytia hemisphaerica|type=transcript|length=1944bp
ATGAGTTAAAAATTTCGATATGGCGTTTTAGAGAATATCTAGTCATTACA
AAAAGTtcccaaaaaatatatatattttaattatttacAGCCTTTCCCAA
ATAAGAACTAAAATTTAACTCACTAAAAATGTTTGCTGATCATTTCTTTA
ActtgttttagttctttatcaaTGACGTGGGAAGTGGCATCGATTTTATC
CTCAAGCCATTCTGTAACTGTTTCATCGTCAAAGAAATTGGAAAGCACTT
CTTTTCCTTTCACCCGTAATTTCATCAGTTCTCTAGAGCTTTTTTCTAAA
CCGTGTCTTGTTTCGTTTAGTTGAAAATAACTTAAATGTCCTTTTTTGAC
GTTGTAAGGTCTCGACCACCCTGTTAATCGCACTTCCGCCCATTCTTTCC
ACCCGTTGTACTTCTCAAAAGTACCCACAAAATTGTAAAACTGCTGCCCT
TTGAATGTCGCATTCTCAGGCTTGTATAGCTTGAAATAATTGACATTGGT
TTGGAAGGGTTTTGGGAAGCCAAGaagttttgatgttttctcATGTACAT
CCTTGTCAAATCCTCCATGATCAAGGATCGCAAGACATAAAGCCATTGTT
GGAACCCCCGCTGGTAGGGTTTCACACAATGGCCCATAGTGATCAAAACG
ACTCCAACCTGTGAGAGCAAGCCCTTCAACCTTTTTACCATTATCTTGAT
ATTTCTTGAAGATCTTCAACCATGACAGATGGTTGTCTAAATGTTGTTGG
GTTGGAACGAAATTCGACCAAGGTTTCAAAGCTCCTTTGAAAGAACTTGC
GAAAAAGATGGTAGGGAAGGCTTGCATATACTTCTCCCACATATCAGTAG
GATAGCTGCGGTAGGTGCTCAGATCTGAAACATATCCCCAAACCATGGGT
ACTACATGTTTGGCCATGACTTTCATATCAGAAACATTCCATTTACGCAT
CATGTCATCCCAAATAACTGGTCTCAGATTTTCACTTTTACTTTTGACGT
ATTGCATTATGGGTATCATGTGACGATGAAACAAGTCAACATCCGTGTAG
TTGCCATGACAACGATCACAACTTTTGACATTCCAAACTTCATCACCACC
TAGATGAAtccattttaaattttgatggaaatCTACCACTTGATCCAACA
TTTTCTTAATCAAAGGCAATGATTGGTTATTCAAAGGGCAGATGGAGGTT
GTCACTTGATCCAACATTTTCTTAATCAAAGGCAATGATTGGTTATTCAA
AGGGCAGATGGAGGTTGTCACATCTTTCTTAGCACGAAGAGTAGCAAATT
CCTTGTGTTTTAATACAAACTCTAAATGACCAAAGGTCTGAATCAAAGGA
ACAATTTCCAGTTTTAGTTCAGCGGCTTTGTTGAGAATGTTCTTTAACTG
TTCTTGGGTGTAGGCATTCTTTCGTGCTACCATTTTGAGGTCACCAGACC
ACGGGAACATGTCTTCATACTCAATGAGAAGACCAGTGGCACCAAACTTT
TGGCTTATTTCCATCACCTCCAAGAAATATTCGACTTTGGGTGGAGCTCC
TTTCAGATCCATGTGTATCAACTTCATCCCTTTGAATGGCACAAGTTTGA
CATCTGTTTTGTGGTCAGTCTCAGGGGAGGAGACCACTTTATTAGAGTCA
TCCTTCTCACCAGCTTTGTGGAGctcttcaaattttgtttttaattcttC
ATTCTCTTTTTGCAGCTCATTCTTCGATTTCAAAATTTCGTCTGATTTAG
CAGAAATTTTGTCGATTTCAGCTTCGAGTTTTTCCTTGGATTTATTATCA
TTATATTTTGCTTTATCAAGATCTTGTCGAAGTTTTTCGATCATTCCATC
TTTTTCTTCGACCACCTTTGCATGTCTTTGTTTGATCACCTCCACTTTCT
CAGCAAGTTGTGCCTCCAAAACTGCAGCAGGactctaaaaaaaa Run BLAST on NCBI transcript from alignment at sc0000348:171464..173980- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020063 ID=TCONS_00020063|Name=TCONS_00020063|organism=Clytia hemisphaerica|type=transcript|length=2517bp|location=Sequence derived from alignment at sc0000348:171464..173980- (Clytia hemisphaerica)
ATGAGTTAAAAATTTCGATATGGCGTTTTAGAGAATATCTAGTCATTACA
AAAAGTTCCCAAAAAATATATATATTTTAATTATTTACAGCCTTTCCCAA
ATAAGAACTAAAATTTAACTCACTAAAAATGTTTGCTGATCATTTCTTTA
ACTTGTTTTAGTTCTTTATCAATGACGTGGGAAGTGGCATCGATTTTATC
CTCAAGCCATTCTGTAACTGTTTCATCGTCAAAGAAATTGGAAAGCACTT
CTTTTCCTTTCACCCGTAATTTCATCAGTTCTCTAGAGCTTTTTTCTAAA
CCGTGTCTTGTTTCGTTTAGTTGAAAATAACTTAAATGTCCTTTTTTGAC
GTTGTAAGGTCTCGACCACCCTGTTAATCGCACTTCCGCCCATTCTTTCC
ACCCGTTGTACTTCTCAAAAGTACCCACAAAATTGTAAAACTGCTGCCCT
TTGAATGTCGCATTCTCAGGCTTGTATAGCTTGAAATAATTGACATTGGT
TTGGAAGGGTTTTGGGAAGCCAAGAAGTTTTGATGTTTTCTCATGTACAT
CCTTGTCAAATCCTCCATGATCAAGGATCGCAAGACATAAAGCCATTGTT
GGAACCCCCGCTGGTAGGGTTTCACACAATGGCCCATAGTGATCAAAACG
ACTCCAACCTGTGAGAGCAAGCCCTTCAACCTTTTTACCATTATCTTGAT
ATTTCTTGAAGATCTTCAACCATGACAGATGGTTGTCTAAATGTTGTTGG
GTTGGAACGAAATTCGACCAAGGTTTCAAAGCTCCTTTGAAAGAACTTGC
GAAAAAGATGGTAGGGAAGGCTTGCATATACTTCTCCCACATATCAGTAG
GATAGCTGCGGTAGGTGCTCAGATCTGAAACATATCCCCAAACCATGGGT
ACTACATGTTTGGCCATGACTTTCATATCAGAAACATTCCATTTACGCAT
CATGTCATCCCAAATAACTGGTCTCAGATTTTCACTTTTACTTTTGACGT
ATTGCATTATGGGTATCATGTGACGATGAAACAAGTCAACATCCGTGTAG
TTGCCATGACAACGATCACAACTTTTGACATTCCAAACTTCATCACCACC
TAGATGAATCCATTTTAAATTTTGATGGAAATCTACCACTTGATCCAACA
TTTTCTTAATCAAAGGCAATGATTGGTTATTCAAAGGGCAGATGGAGGTT
GTCACATCTTTCTTAGCACGAAGAGTAGCAAATTCCTTGTGTTTTAATAC
AAACTCTAAATGACCAAAGGTCTGAATCAAAGGAACAATTTCCAGTTTTA
GTTCAGCGGCTTTGTTGAGAATGTTCTTTAACTGTTCTTGGGTGTAGGCA
TTCTTTCGTGCTACCATTTTGAGGTCACCAGACCACGGGAACATGTCTTC
ATACTCAATGAGAAGACCAGTGGCACCAAACTTTTGGCTTATTTCCATCA
CCTCCAAGAAATATTCGACTTTGGGTGGAGCTCCTTTCAGATCCATGTGT
ATCAACTTCATCCCTTTGAATGGCACAAGTTTGACATCTGTTTTGTGGTC
AGTCTCAGGGGAAGAGATCACTTTATTAGAGTCATCCTTCTCACCAGCTT
TGTGGAGCTCTTCAAATTTTGTTTTTAATTCTTCATTTTCTTTTTGCAGC
TCATTCTTCGATTTCAAAATTTCGTCTGATTTAGCAGAAATTTTGTCGAT
TTCAGCTTCGAGTTTTTCTTTGGATTTGTTATCATTATATTTTGCTTTAT
CNTTTAAATTTTGATGGAAATCTACCACTTGATCCAACATTTTCTTAATC
AAAGGCAATGATTGGTTATTCAAAGGGCAGATGGAGGTTGTCACATCTTT
CTTAGCACGAAGAGTAGCAAATTCCTTGTGTTTTAATACAAACTCTAAAT
GACCAAAGGTCTGAATCAAAGGAACAATTTCCAGTTTTAGTTCAGCGGCT
TTGTTGAGAATGTTCTTTAACTGTTCTTGGGTGTAGGCATTCTTTCGTGC
TACCATTTTGAGGTCACCAGACCACGGGAACATGTCTTCATACTCAATGA
GAAGACCAGTGGCACCAAACTTTTGGCTTATTTCCATCACCTCCAAGAAA
TATTCGACTTTGGGTGGAGCTCCTTTCAGATCCATGTGTATCAACTTCAT
CCCTTTGAATGGCACAAGTTTGACATCTGTTTTGTGGTCAGTCTCAGGGG
AGGAGACCACTTTATTAGAGTCATCCTTCTCACCAGCTTTGTGGAGCTCT
TCAAATTTTGTTTTTAATTCTTCATTCTCTTTTTGCAGCTCATTCTTCGA
TTTCAAAATTTCGTCTGATTTAGCAGAAATTTTGTCGATTTCAGCTTCGA
GTTTTTCCTTGGATTTATTATCATTATATTTTGCTTTATCAAGATCTTGT
CGAAGTTTTTCGATCATTCCATCTTTTTCTTCGACCACCTTTGCATGTCT
TTGTTTGATCACCTCCACTTTCTCAGCAAGTTGTGCCTCCAAAACTGCAG
CAGGACTCTAAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020063-exon-sc0000348-1575043694:172776..173980 | TCONS_00020063-exon-sc0000348-1575043694:172776..173980 | Clytia hemisphaerica | exon |
| TCONS_00020063-exon-sc0000348-1575043694:171464..172202 | TCONS_00020063-exon-sc0000348-1575043694:171464..172202 | Clytia hemisphaerica | exon |
| TCONS_00020063-exon-sc0000348-1510915933:172776..173980 | TCONS_00020063-exon-sc0000348-1510915933:172776..173980 | Clytia hemisphaerica | exon |
| TCONS_00020063-exon-sc0000348-1510915933:171464..172202 | TCONS_00020063-exon-sc0000348-1510915933:171464..172202 | Clytia hemisphaerica | exon |
| TCONS_00020063-exon-sc0000348-1491911889:172776..173980 | TCONS_00020063-exon-sc0000348-1491911889:172776..173980 | Clytia hemisphaerica | exon |
| TCONS_00020063-exon-sc0000348-1491911889:171464..172202 | TCONS_00020063-exon-sc0000348-1491911889:171464..172202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:171464..173980 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015883 | Glyco_hydro_20_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
BLAST of TCONS_00020063 vs. Swiss-Prot (Human)
Match: HEXDC (Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3) HSP 1 Score: 269.626 bits (688), Expect = 9.472e-82 Identity = 163/496 (32.86%), Postives = 255/496 (51.41%), Query Frame = -2
Query: 141 PFKGMKLIHMDLKGAPPKVEYFLEVMEISQKFGATGLLIEYEDMFPWSGDLKMVARKNAYTQEQLKNILNKAAELKLEIVPLIQTFGHLEFVLKHKEFATLRAKKDVTTSICPLNNQSLPLIKKMLDQVTTSICPLNNQSLPLIKKMLDQVVDFHQNLKWIHLGGDEVWNVKSCDRCH------GNYTDVDLFHRHMIPIMQYVKSKSENLRPVIWDDMMRKWNVSDMKV--MAKHVVPMVWGYVSDLSTYRSYPTDMWEKYMQ-AFPTIFFASSFKGALKPWSNFVPTQQHLDNHLSWLKIFKKYQDNGKKVEGLALTGWSRFDHYGPLCETLPAGVPTMALCLAILDHGGFDKDVHEKTSKLLGFPKPFQTNVNYFKLYKPENATFKGQQFYNFVGTFEKYNGWKEWAEVR----LTGWSRPYNVKKGHLSYFQLNETRHGLEKSSRELMKLRVKGKEVLSNFFDDETVTEWLEDKIDATSHVIDKELKQVKEM 1589
PF+ M+L+H+DLKGAPPKV Y E+ + + GA GLLIEYEDMFP+ G L+++ K AY+ ++K IL+ A +LE++PL+QTFGH+EFVLKH FA LR +V + C LN P +SL L+ M+DQV++ H + +H+G DEV+ + + N T L HM + VK++ ++ P++WDDM+R + + + V P++W Y +DL + + +KY + FP ++ AS+FKGA P P + HL NH+ WL++ + ++G+ LTGW R+DHY LCE LPAGVP++A CL +L GGFD+DV K LLG +++ + +F G V + A + +TGW PY+ ++ + + + + L + + L F + V EWLE+ + + + L+ + E+
Sbjct: 6 PFQ-MRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYEGPLRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLR---EVGSFPCTLN-------------------PHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTG-KLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGK--VLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTD--SLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGI-----SSLEKTDPVREGAGSFPGSNILALVTQVSLHLRSSVDALLEGNRYVTGWFSPYHRQRKLIHPVMVQHIQPAALSLLAQWSTLVQELEAALQLAFYPDAVEEWLEENVHPSLQRLQALLQDLSEV 468
The following BLAST results are available for this feature:
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