TCONS_00020110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020110
Unique NameTCONS_00020110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020110 ID=TCONS_00020110|Name=TCONS_00020110|organism=Clytia hemisphaerica|type=transcript|length=3812bp
TTATCGGACAGATCCATAACCCAGGATAAAGAGCGCCATATACGATCTGT
GAGCTGAACAGAAACATAATCTTCATAAAGATGGCGGAGATCTCTTACGC
AGATGCTGCAAAAACAATGCCTGAAAACGTGGAGGAGATGTGGGAACTAG
TGGAGAAAACCTCGTTAAAGGAATCCTTTGAAGTGCTCCCCGTTAAAAAT
CGTCGCGGATGGAGAACAATCCGAATATTCGTCTCCAGCACTTTCAAAGA
CTTTCTAAACGAACGAGAAATTCTCGTGAAAGAATTATTTCCTGACTTAC
GCCTTTGGTGTGAGGAAAGAAAACTTCGATTGATTGAGTGTGATTTGAAA
TGGGGTGTTCCTATAGGTACCACTGGAAGTGAAACCATTCAAATATGTTT
AGGGGAGTTGGATCGTTGTTGCGAGGAGAATCATGTGCCgttctttttga
atttatgTGCAGAGCGTGTGGGTTGGATCCCGACTTCAGAGGAACTGACC
GCCAACCTGACTTCTCATTATGGTTGGGTACATGGTCTATCCATTACAGA
AATGGAGATTGTGCACGGCGCCTTGAGAAAAATGAATCCAAATGCTCTGT
TCATGATTCGTGAAGCTGATTCGTTGGAAGGGCTTCCTGATCATATTGTT
GAAGCTTTCAAGGAATCAAATGAACGAAGTGTAGAGAAACTGAGCATGTT
AAAAACCAAGGTGGCTGAAGCATTCCCGAGTAATCATCATTTTTACCAAG
TCAAGGGGAATTATGTGAAGGACGATGACAACCGAGAAAATGTCACTTTC
GAGGGTCTCAATGGAGATTTTTATCAgaaagtattttcttttttcaaaga
acGCATTGAAATGTTGTACCCGCTTGAAGATTCACCCGAGGATCCAATAG
AGGTACAAAGGGAAGCGCACTTGACCTTTATGGAAACACGTTCGAAAAGC
GTGCTTGGTCGAGATCAACAACTTGGTGAAATACAGTACTATATTAGGAA
CGATCAGACTTATTCACCCCTTGTTCTGGTTGGACAGAGCGGTGCCGGGA
AATCTTCAATTATTGCCCGAAGTGCACGAGACGTGTGTGATATGATAGAT
GACGGACAGCTATCCGGGAAAGTGTTTGTCCATTTTGTTGGTGCAACACC
TGGATCCACCGACCTTGTCTCGTTCCTGAAACGGATCGTTGCCGAGTTGA
GTCCAGACAATAAAGAGAGTATATCTGATCTTCAAGGTTATGTGCAGCTG
GTTTGTCGATTGTTGTCGAAGGAGGAAATTGGACCCGTGTATCTGTTCAT
CGACGCAATCAACCAGATGGATGAAGACAAGCAATATTATCTCGCCCGTT
GGTTACCATGCCAACTTGCTCAAAACATACGTGTTGTAATCTCAACCATT
GAAAACACCGACACCCATCAAATTCTCACAAAGTTTGTTCCCGCCCCGAA
AGAAATTGCTTGCGGCCCCTTAGACGAAACATCACGCGAAGAAATCGTCC
GCAACATTTTACGGGATTACACCAAAGAACTACATCCAGATCAAATGAGA
TTATTGATATCCAAAAAGGGCTCGTCCAACCCACTTTGGCTAGCCGTTGC
GTGTGAGGAACTCCGTGTGGAAGCAGTGTTCGAAACGGTGACGTCAATGA
TCGAAGCATTTCCCaatgagcttattgacatggagGTTAACTTAATCAAT
CGGTTAGTACGTGGTGAGAACGGAGATCAGATCAAAAGCGCACTTCTCCT
TCTCGAAGTTTCGCGACATGGATTGCTTGAAACGGAACTCATGGAACTCC
TAGCTGAGAAAAATCTTCATCTAGTTGGGAGCACCTTTGAGGAAGGTGAT
GAGAATGAGAAGGTTAAACCCGGCTGTAAGAAGACAATACCGGCTCGTGA
TTGGGCTATCATTTATCGTAACATCAAGCAGCTTCTCCGACCATGTGGTA
ACCTTGGAGACGGTAGATTAGATTTCTATCATCGATCGTTGAGCAAAGCC
GTTCGTAAACAGTTCCTAAGTGGTTCGCCTGGTGAAGAGAAAAAGCACGT
GTACGTCCACTGGCATCGTGTGTTGGCGGATTATTTCGAGAAAGCGACGG
ACGACGATCGAAGAGCGGAGGAACTACCGTATCATTTAGAGCAACTCTCC
GATTCTGCTCGTTTAGAGAAATGTCTTATCGACTGGAATATCTTTAATCG
TCTGTATGATGAGCATTTTGCTGTTGAATTGATCAGGTTTTGGAAGGCTG
CTGGTGGCTATGAGGCAGCTGCTCGCAGATACACAGATTCCCTTGGTCAG
TTGAAAGAAACAGAAATATCACGCACCGAGTTCTCCGAACAGCAGTACAA
GGTGGCAAACTTTCTGAAGGCAGGAGGGCAATTCAGACAAGCTCATGCAA
TGATGCTAGAAAGTATTGCAATCGAGGAAGCAGAGAACACAGTGAAGATC
GATCCATTTCGCGTGGCACAAATGTGTCATTGGACGGCATACTGTAAGCG
TGCCTTGTCATTCAAAGAGCCCACACCTGAagagaaaatcaaaagttttg
aagaagCTATCGAAACCTATCATAAAAGTAACGCGTTTCTTGACCGTTTA
ACGTGCGAAGAAAGTGAAGTTTTGCGAGGAAGAAGCAACTGTGGTATGGC
TCACGTCATGTTGAAGATTTCAGACGAGAAAAAAACTCACGATTCTGACG
AATTCCAAAGCATTGCTGCACCTTTGATCAAATCCTCAGTCGACGTCCTC
GAAAAGTATAACGCAATACGGTATCTGATCGATGCGCTCGGTACACAATC
ACTGATCGTGCCTAATGGTCCTGAAttcttcgaagaaaaaaaacgaattc
gAATGCGTGCTCTTGACTTATGTTTAAGAACATTCGGCGAGGTCCACGAT
TTGTTTGTTACTAAATCGCGGAATTTTGGTGCCATCTTGAAAAAGGCTGA
TGATTACGAATCGGCTTATGATTGGTATCATAGATCTCTGGTCGCCAGTA
CAAAACTGTACGGTCCCGAGCATTCGTACACACAACTTGTTCAGAAAGAT
CTTCAGGACCCAGTGTTTACGGACATAGCCGAACGACGATTTCGTAGCGC
TGAAGAGACGAAGCTACCGTTAGCAGTTGGGTACGAACCACCTGAAAACA
ACGATGAGCAGATTGGGAAGAATCCGGGAAATGAatcaggcaagaaaaat
gaaACTGGGGCATCTGATGACGAGAATGAACCCAATGGTGCGAAATTAGA
GATTGCCGAAAGAACAGATCGAAGTGGGATGTGCTGCTTTCTATAAATTG
ACACAAATACTTCTTTCATAATTATGAAATCGTTGTGAGGAACTATTCAA
TATTTCACATAGACAGTTAGACCTTTTTAGAAGGACGGCTTTCTGCCTTT
TCTCAGTCCGATCGATGTAAGAGAAAGCAAAAGATTAAGCTGAAGTCATC
GTATTGACTTTCAGCTCTTCCCGacttttaccaaaaataaaGTGACCTTG
GttaaaaattatttgataaatGCCCCATAGTGTGAACCCCCCTTCTTTAA
GGGGATCCAACTTTTCAAGAAAGGCTTTATAGGGTGGGATTTTCCAAGTA
AAATTGGGGGTTTGTGTTTTTAGGGGGgtattaaataaaaataggggaaa
taacaaattttttgcaaaaatatgtaTTTATCTTTAAATGGTCAAAGAAT
TGGGTATAGTCCAACAAAATTACAATGTAATGGCAAATTTTTGGTATTAA
ATTGTTTGTGAACCACCATTGTAGTTAGTGCGGGttcgaaaaaattttta
aataggGAGAAT
Run BLAST on NCBI

transcript from alignment at sc0000349:196024..203788+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020110 ID=TCONS_00020110|Name=TCONS_00020110|organism=Clytia hemisphaerica|type=transcript|length=7765bp|location=Sequence derived from alignment at sc0000349:196024..203788+ (Clytia hemisphaerica)
TTATCGGACAGATCCATAACCCAGGTTATTTATTATTCAGTGTAGAGCTA
TTTCATATCTATTTTTGAGGGGATCTAAATATTTTATGATAtattatttt
tcctcttttgctAGGAAAAAATGTTCCCTTTCTGTAACAAGGAACAAGTT
ACTTTGGTTTTCATAATTTGTATAATGTTGTAACTTTTTCTGAATGTTTT
TCTCATAATTGGAAAAGATCTCGCTATATTCTAATACCCTACGCTGAAGA
ATTGAGCCCCTTTGGTAAgtataaggcgagaccaattttgattagttgtt
ttacgggcccgaccgaccctgaaataaaaataaagttgattttggtagta
cattttatttttaatgcttaacagactgcaaaattttcaaaactttgata
ttttttccaaggttttttagaatttcatgttcaatttttcattttatcca
taaaTTCGAGATCTTTCTGTCTTTTTattctatttcgcatttttgtcaag
atttagtagtttttgctgcctttttaggagttTTTATCGGAGAAATTCga
cttttatttttactttttcgcCGACtgacctcttttttgggtagcttggc
ccgtaaaacaacaaatttaacTAGTCTCGCCTGATGTGTTTAGCTTGAGC
GTTCTTTCCAtgtgtttattttttgtttttattgtgaTCATTATATTATC
CTATTGGCTGGATCTAAAACTTTTTATCTATAAAACTTACATTCGGACCA
AACTGCTTAGTAAAATCTTAAAGTGATAGATAAATTATTAACCTTCTACA
ATATTATGTCCAAAGTGAACATTATCCTATGGGCAGGATCTTGGAGtgca
ttacacgtttttttataaggacatccAAAACATTTAAAGTCATTTAAAGT
ttcttaacttttgagttttaaacctaaaaatgttcttataacatgttctt
attttcaccatcttTTGAGTATTTCTGttcattttccttaaaaataggTT
GTTTTGGaatccgcaaagccttaaaatgttcttaacaagttcttaatatt
ttgatacatcaaatccatatatagtttgttcttacaaaaaacgtgtattg
cttAAAATACTATATTTTAAAAGTATTTACAATTGAGTTTAAAATCTTCT
TCGTTTGACTGGAGGTTAGTAGCTTTGTTCGACTAGGGTGAGTGCTTTTC
ATCGTAGAGACCAGGGACTAGACAGGTCGAAACACATTGCTGTATAAATG
AGCATAGATGACGGTGAATGTTTCTCAATATCACAACTCCTTCTCATGTG
AACTATGACAAAGACACATGagataattttagaaaaattggaGTGTGAAA
AGTATATCCAAGCAtgtttcacaaaaataatgtaTCCTTTTACTTGTTCT
TCAGGATAAAGAGCGCCATATACGATCTGTGAGCTGAACAGAAACATAAT
CTTCATAAAGATGGCGGAGATCTCTTACGCAGATGCTGCAAAAACAATGC
CTGAAAACGTGGAGGAGATGTGGGAACTAGTGGAGAAAACCTCGTTAAAG
GAATCCTTTGAAGTGCTCCCCGTTAAAAATCGTCGCGGATGGAGAACAAT
CCGAATATTCGTCTCCAGCACTTTCAAAGACTTTCTAAACGAACGAGAAA
TTCTCGTGAAAGAATTATTTCCTGACTTACGCCTTTGGTGTGAGGAAAGA
AAACTTCGATTGATTGAGTGTGATTTGAAATGGGGTGTTCCTATAGGTAC
CACTGGAAGTGAAACCATTCAAATATGTTTAGGGGAGTTGGATCGTTGTT
GCGAGGAGAATCATGTGCCgttctttttgaatttatgTGCAGAGCGTGTG
GGTTGGATCCCGACTTCAGAGGAACTGACCGCCAACCTGACTTCTCATTA
TGGTTGGGTACATGGTCTATCCATTACAGGTcagtttcaaactattttta
attatatcaagttttttttacaaatccGCTAACCTTTCATTAAAATCCTG
GAGTGATTTCATCGTTGATCGGAGCTCTAAATAATTTCGGTTTTGAAGTC
ACATTTAAGGGTTGAAACCAGcagcttataaaataaaataacatcTTAAG
AAATTGTCTCCAAGGTTATACAAATCTCTCtatttcgaacctctataatt
cgaatcattCTGTCATTCAAACTTAAATATCGGTCCCCTCAGCTAGAAAT
TAGCATAAAATGTTCTCTCTATAgttcaaatatttctttaattcgaGGAA
AAAATATAGCAccatgaagatcgaattagagtaCGGCAACTATATAAAAC
TCACCTATTAATAATATTTGTCATGGTAATGGCTTAATAGAATTGCCACT
CTGATGTCATCATTGTCTGTTAAAGACTTCTTTTGTTTGAGAAGACGTCA
TAAGTGGCAAAATAAATGTTATGAAGCTATTGTCCCAGTTAGAAGATTAG
TCAGATTAAATTCTACTCAGTGAGGAATAGTTTACTGGTTTTCAATCTCT
TTCAAATTCTTTCCCTCTAGGAATCCTTGTTAAGTTCTTCATCCCTTTGC
ATACTTGCAAACTTTCTTGTCTTCCATCTCCCaattcgatttgcgtaagg
gatcATCACTAAACAGATTCgaatgtttgcttccataatggtggaaatta
cgTAACATAACCAAACAAGAAAGAACCTTCATTCTGTCTTTAGACCTTCT
CCTCCCATTTTTCCTATGTATATTGTATTTTGTCTTTAGAAATGGAGATT
GTGCACGGCGCCTTGAGAAAAATGAATCCAAATGCTCTGTTCATGATTCG
TGAAGCTGATTCGTTGGAAGGGCTTCCTGATCATATTGTTGAAGCTTTCA
AGGAATCAAATGAACGAAGTGTAGAGAAACTGAGCATGTTAAAAACCAAG
GTGGCTGAAGCATTCCCGAGTAATCATCATTTTTACCAAGTCAAGGGGAA
TTATGTGAAGGACGATGACAACCGAGAAAATGTCACTTTCGAGGGTCTCA
ATGGAGATTTTTATCAgaaagtattttcttttttcaaagaacGCATTGAA
ATGTTGTACCCGCTTGAAGATTCACCCGAGGATCCAATAGAGGTACAAAG
GGAAGCGCACTTGACCTTTATGGAAACACGTTCGAAAAGCGTGCTTGGTC
GAGATCAACAACTTGGTGAAATACAGTACTATATTAGGAACGATCAGACT
AATTCACCCCTTGTTCTGGTTGGACAGAGCNGACTACATTAGGAACGATC
AGACTTATTCACCCCTTGTTCTGGTTGGACAGAGCGGTGCCGGGAAATCT
TCAATTATTGCCCGAAGTGCACGAGACGTGTGTGATATGATAGATGACGG
ACAGCTATCCGGGAAAGTGTTTGTCCATTTTGTTGGTGCAACACCTGGAT
CCACCGACCTTGTCTCGTTCCTGAAACGGATCGTTGCCGAGTTGAGTCCA
GACAATAAAGAGAGTATATCTGATCTTCAAGGTTATGTGCAGCTGGTTTG
TCGATTGTTGTCGAAGGAGGAAATTGGACCCGTGTATCTGTTCATCGACG
CAATCAACCAGATGGATGAAGACAAGCAATATTATCTCGCCCGTTGGTTA
CCATGCCAACTTGCTCAAAACATACGTGTTGTAATCTCAACCATTGAAAA
CACCGACACCCATCAAATTCTCACAAAGTTTGTTCCCGCCCCGAAAGAAA
TTGCTTGCGGCCCCTTAGACGAAACATCACGCGAAGAAATCGTCCGCAAC
ATTTTACGGGATTACACCAAAGAACTACATCCAGATCAAATGAGATTATT
GATATCCAAAAAGGGCTCGTCCAACCCACTTTGGCTAGCCGTTGCGTGTG
AGGAACTCCGTGTGGAAGCAGTGTTCGAAACGGTGACGTCAATGATCGAA
GCATTTCCCaatgagcttattgacatggagGTTAACTTAATCAATCGGTT
AGTACGTGGTGAGAACGGAGATCAGATCAAAAGCGCACTTCTCCTTCTCG
AAGTTTCGCGACATGGATTGCTTGAAACGGAACTCATGGAACTCCTAGCT
GAGAAAAATCTTCATCTAGTTGGGAGCACCTTTGAGGAAGGTGATGAGAA
TGAGAAGGTTAAACCCGGCTGTAAGAAGACAATACCGGCTCGTGATTGGG
CTATCATTTATCGTAACATCAAGCAGCTTCTCCGACCATGTGGTAACCTT
GGAGACGGTAGATTAGATTTCTATCATCGATCGTTGAGCAAAGCCGTTCG
TAAACAGTTCCTAAGTGGTTCGCCTGGTGAAGAGAAAAAGCACGTGTACG
TCCACTGGCATCGTGTGTTGGCGGATTATTTCGAGAAAGCGACGGACGAC
GATCGAAGAGCGGAGGAACTACCGTATCATTTAGAGCAACTCTCCGATTC
TGCTCGTTTAGAGAAATGTCTTATCGACTGGAATATCTTTAATCGTCTGT
ATGATGAGCATTTTGCTGTTGAATTGATCAGGTTTTGGAAGGCTGCTGGT
GGCTATGAGGCAGCTGCTCGCAGATACACAGATTCCCTTGGTCAGTTGAA
AGAAACAGAAATATCACGCACCGAGTTCTCCGAACAGCAGTACAAGGTGG
CAAACTTTCTGAAGGCAGGAGGGCAATTCAGACAAGCTCATGCAATGATG
CTAGAAAGGTAAGGATATTGTATCTCAATTTAGTTTAGCATATGATTAGT
TACATTATTAGGCCATGGGTACAAAAACCCTAAATGCCGTGACCAAACTT
CTTATTTCTTTTGGTCAATTTGACAGAAAAGGAGAGAGCAGGAATAAAAT
GTCAAAGAACCTCGAAAAACAGGCAGATTTAGCTTTTTACTAGATTTGGA
GTACGCCAAACTCTCCTGTGCGAGTTGTGCTTTTGCTCGAAGATGCTGTC
GAAAAGATAttgtttccaaaaaaaaaaaacggtacAGATTTTATATATAC
GAAACTATCTATCTATCTTACTAATTTCGGGATATTTACAATAATATCGG
AATTCTAGTTTAAGCAATGAATGCATAACTTAGGTAGCTCAAAtactaat
aaaaaataaaaatattaaataaagtatttaggaaatctatatattaatag
cggtgNAAtactaataaaaaataaaagtattaAATAAAGTATTTAGGAAA
TAGGTAATAAAACTGATATTAATTACGAGGAGTTTAATTTATGATGAATA
AAAATAGTCAAATCCCTTTCTGCTCTCTTGCAAAACCTTACAGTGCATTA
CGCCTATCTTGAAAACATACCCGTAGCCGATCAACTTGCCTGGCGTTccg
tttatatatttttttaataaacttgactgtttattttttatctcCGTAGT
ATTGCAATCGAGGAAGCAGAGAACACAGTGAAGATCGATCCATTTCGCGT
GGCACAAATGTGTCATTGGACGGCATACTGTAAGCGTGCCTTGTCATTCA
AAGAGCCCACACCTGAagagaaaatcaaaagttttgaagaagCTATCGAA
ACCTATCATAAAAGTAACGCGTTTCTTGACCGTTTAACGTGCGAAGAAAG
TGAAGTTTTGCGAGGAAGAAGCAACTGTGGTAAGAatcatcttctttttt
tctcaataaaaatctatacgctcttttttataagaaccagtattTTTTTA
TGACACTAGGCTTTTCTTACTTCCTACTTGGCCCTTTGATCCTTGAAACT
TTTCTTTAGGGCAGTCTGAGGTTAGGCTTCATCCCTAATTTTTACTAACT
TTGACCATTATAATATTtgcttgaaattcagcaattccAAACTTGAATTG
TTCTTCAGTTTTGACGATTTTGCAGCTTGACATTCCATTACAACTAATGT
ACAATATGACATTTAAACTGTGTTGCCAATTGTGAACGGTTCTCCGACTG
CGAATATTCAATAAATCGTTCTctcaaagattttaaaagaagcACACCAA
ACATTACCCCATAGATCCCCCAAggtaaaagtaaacaaagtttCAGGCAG
ATATTTCCCCAGCCTAAATGAAACACGCCAAATATACCCCACAGATCCCC
CAAggtaaaagcaaacaaaaatttcaggCAGATATTTCCCCAGCCTAAAA
GAAACACGCCAAATATACCCCACAGATTCCCCAAGGtaaaagcaaacaaa
gtttCAGGCAGATATTTCCCCAGCCTAAATGAAACACGCCAATTACCCCA
TAGATTCCCCAAggtaaaagcaaacaaaaatttcaggCAGATATTTCCCC
AGCCTACAAGTACACGAAACTCCAACCACAAAGACCACTCTCTCCACTTT
CCATGCTACCCAGAAATTTTCAGACATGCAGACAAACTACACTGATATCT
ACATTGATGACAGACACACAGTTaagaaagaaaacgaaaagaaaCAGCAG
AATCGATCTGACGGTTACTTGTAAACGATTTGAGTGAAGATAGTGATGAA
TATGTATACGCTTTTAATGAAAAGGATAAAAATAGTCAGCCCAAAGACAT
AGATTGCAAGGACATTGCAACACAACTACGTAACGAAAACAACACACAAA
AACacaattgtaaaaaaaaaaaaagttaaattttgataaattacaGGTAT
GGCTCACGTCATGTTGAAGATTTCAGACGAGAAAAAAACTCACGATTCTG
ACGAATTCCAAAGCATTGCTGCACCTTTGATCAAATCCTCAGTCGACGTC
CTCGAAAAGTATAACGCAATACGGTATCTGATCGATGCGCTCGGTACACA
ATCACTGATCGTGCCTAATGGTCCTGAAttcttcgaagaaaaaaaacgaa
ttcgAATGCGTGCTCTTGACTTATGTTTAAGAACATTCGGCGAGGTCCAC
GATTTGTTTGTTACTAAATCGCGGAATTTTGGTGCCATCTTGAAAAAGGC
TGATGATTACGAATCGGCTTATGATTGGTATCATAGATCTCTGGTCGCCA
GTACAAAACTGTACGGTCCCGAGCATTCGTACACACAACTTGTTCAGAAA
GATCTTCAGGACCCAGTGTTTACGGACATAGCCGAACGACGATTTCGTAG
CGCTGAAGAGACGAAGCTACCGTTAGCAGTTGGGTACGAACCACCTGAAA
ACAACGATGAGCAGATTGGGAAGAATCCGGGAAATGAatcaggcaagaaa
aatgaaACTGGGGCATCTGATGACGAGAATGAACCCAATGGTGCGAAATT
AGAGATTGCCGAAAGAACAGATCGAAGTGGGATGTGCTGCTTTCTATAAA
TTGACACAAATACTTCTTTCATAATTATGAAATCGTTGTGAGGAACTATT
CAATATTTCACATAGACAGTTAGACCTTTTTAGAAGGACGGCTTTCTGCC
TTTTCTCAGTCCGATCGATGTAAGAGAAAGCAAAAGATTAAGCTGAAGTC
ATCGTATTGACTTTCAGCTCTTCCCGacttttaccaaaaataaaGTGACC
TTGGttaaaaattatttgataaatGCCCCATAGTGTGAACCCCCCTTCTT
TAAGGGGATCCAACTTTTCAAGAAAGGCTTTATAGGGTGGGATTTTCCAA
GTAAAATTGGGGGTTTGTGTTTTTAGGGGGgtattaaataaaaatagggg
aaataacaaattttttgcaaaaatatgtaTTTATCTTTAAATGGTCAAAG
AATTGGGTATAGTCCAACAAAATTACAATGTAATGGCAAATTTTTGGTAT
TAAATTGTTTGTGAACCACCATTGTAGTTAGTGCGGGttcgaaaaaattt
ttaaataggGAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011303XLOC_011303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020110-exon-sc0000349-1491911889:196024..196047TCONS_00020110-exon-sc0000349-1491911889:196024..196047Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1510915933:196024..196047TCONS_00020110-exon-sc0000349-1510915933:196024..196047Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1575043694:196024..196047TCONS_00020110-exon-sc0000349-1575043694:196024..196047Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1491911889:197428..197952TCONS_00020110-exon-sc0000349-1491911889:197428..197952Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1510915933:197428..197952TCONS_00020110-exon-sc0000349-1510915933:197428..197952Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1575043694:197428..197952TCONS_00020110-exon-sc0000349-1575043694:197428..197952Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1491911889:198763..199205TCONS_00020110-exon-sc0000349-1491911889:198763..199205Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1510915933:198763..199205TCONS_00020110-exon-sc0000349-1510915933:198763..199205Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1575043694:198763..199205TCONS_00020110-exon-sc0000349-1575043694:198763..199205Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1491911889:199261..200681TCONS_00020110-exon-sc0000349-1491911889:199261..200681Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1510915933:199261..200681TCONS_00020110-exon-sc0000349-1510915933:199261..200681Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1575043694:199261..200681TCONS_00020110-exon-sc0000349-1575043694:199261..200681Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1491911889:201373..201602TCONS_00020110-exon-sc0000349-1491911889:201373..201602Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1510915933:201373..201602TCONS_00020110-exon-sc0000349-1510915933:201373..201602Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1575043694:201373..201602TCONS_00020110-exon-sc0000349-1575043694:201373..201602Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1491911889:202620..203788TCONS_00020110-exon-sc0000349-1491911889:202620..203788Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1510915933:202620..203788TCONS_00020110-exon-sc0000349-1510915933:202620..203788Clytia hemisphaericaexon
TCONS_00020110-exon-sc0000349-1575043694:202620..203788TCONS_00020110-exon-sc0000349-1575043694:202620..203788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:196024..203788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.8032e-09	0.822163	1.18951	0.429375	0	0	0.00682088	5.42892e-05	8.26285	11.8722	2.56683	4.34688	1.04832e-07	1.52125e-07	1.85629	0.527926	0.000659168	0.438463	0.00522172	0.114724	2.45718	0.0063186	2.02035	3.51237	2.40926e-08	0	0.768425	0.43547	0.499885	0.335621
Blast
[Close]
BLAST of TCONS_00020110 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 7.854e-43
Identity = 188/720 (26.11%), Postives = 317/720 (44.03%), Query Frame = 3 
Query:  198 NRRGWRTIRIFVSSTFKDFLNEREILVKELFPDLRLWCEERKLRLIECDLKWGVPIGTTGSET-----IQICLGELDRCCEENHVPFFLNLCAERVGWIPTSEELTANLTSHYGWVH----GLSITEMEIVHGALR--KMNPN--ALFMIREADSLEGLPDHIVEAFKESNERSVEKLSMLKTKVAEAFPSNHHFYQVKGNYVKDDDNRENVTFEGLNGDFYQKVFSFFKERIEMLYPLEDSP--EDPIEVQRE--AHLTFMETRSKSVLGRDQQLGE-IQYYIRNDQTYSPLVLVGQSGAGKSSIIARSARDVCDMIDDGQLSGKVFVHFVGATPGSTDLVSFLKRIVAELSPDNKESISDLQGYVQLVC----RLLSK--EEIGP---VYLFIDAINQMDEDKQYYLARWLPCQLAQNIRVVISTIENTDTHQILTKFVPAPKEIACGPLDETSREEIVRNILRDYTKELHP----DQMRLLISKKGSSNPLWLAVACEELRVEAVFETVTSMIEAFPNELIDMEVNLINRLVRGENGDQIKSALLLLEVSRHGXXXXXXXXXXXXKNLHLVGS---TFEEGDEN--EKVKPG-CKKTIPARDWAIIYRNIKQLL------RPCGN--LGDGRLDFYHRSLSKAVRKQFLSGSPGEEKKHVYVHWHRVLADYFEKATDDDRRAE----------ELPYHLEQLSDSARLEKCLIDWNI 2192
            +++GWR+IR+F+SSTF+D   ER++L++ + P L+      ++ L   DL+WGV    T  ET     +++CLGE++      +   F+ +   R G+IP S  L  +   H+ W      G S+TEME++    R  ++ P+  AL   R++  L  +PD     F   +E +  ++S LK+ ++         Y  +   V          + G   +F Q V       I+ LY L+     E P+ +  +     TF + +      R + L + +Q  +      S  ++ GQSG GK++ +A S        D  +++  VF HF GA P     ++ L+R+   L    KE  +    Y  LV     RLL K  E + P     L ID  +++ +     ++ W+P +L + + +V+S   +    + L +   A   +A GPL+ ++R  +VR  L  Y K L      +QMRLL+ K+ S  PL+L +  + LR+  ++E V+  +   P  +  +  ++++ L +    D +  AL  LEV+R G         L    LH V S   T  +G ++  E V  G      P   +A + ++++ LL      RP     L DG L        +   K+     PG E        H ++A    K  D D              +LPYHL Q  +   L K L + ++
Sbjct:  892 SQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGV----TEEETRRNRQLEVCLGEVE------NAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVA-----AGRPYVGGLEEFGQLVLQDVWNMIQKLY-LQPGALLEQPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHGRLS--LVTGQSGQGKTAFLA-SLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGA-HVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSG---------LTVDQLHGVLSVWRTLPKGTKSWEEAVAAGNSGDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPL--------RTAAKRCYGKRPGLEDTA-----HILIAAQLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLLSKFLTNLHV 1567
The following BLAST results are available for this feature:
BLAST of TCONS_00020110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEP17.854e-4326.11Telomerase protein component 1 OS=Homo sapiens GN=... [more]
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