|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020143 ID=TCONS_00020143|Name=TCONS_00020143|organism=Clytia hemisphaerica|type=transcript|length=2320bp
CTCCAAACATACCACTAACATACGCAGCATGCTTTAATAACCACAAGTAA
TCAAAAACGGATCAACGTAAACACCTTCCGCTTGTTTCTCTCTTAAATCC
AAAAGTTCGTTCTTCATACTCAAATAATCCATAGGTACATGAAAACTCAC
CAAATTCGAAAAGCACCCAACACATAAAATAGTTCGATCTTTAGATATTT
CAACCAAGTCCATAAAATAGAAATCCATACCGTTCCGTTCTTTCCCTTGG
TCTCGACACATGATACAGCCTTTAAGAGCAACGCTGACTTCCCCAATACA
CACATAGAAATACTCTGAAACAGTATCTGTAAACGGACAGCCCGGCTTTT
TCAATTTCCGGACAGAACGACGGTTTATAATTTCAAGAGCCATTCTAAAC
ATACATTGTTTCGTTTCAACTGGAGTCTCAAGGGTGCAATTCACGTAATG
CCGCCCGTGCCGCCCTTGTAAATGATATAAAGGCGCTTTGAAGCTTTTAG
GTTTATTATTGGTCAAATCAATGTTGATCCTCTTCTTGACAGCTTTGGGT
TGGATGGAGACACGTCTGCTTTGGTAGCGTTTCGAACTATTTTCACCGAC
GCCGTCCGATGATTTGTgtttgtcggattttttatcaTGGCGATCGTGAC
TGTAATGCGCTATGCTCGGCATAATGTAATGTCAGTACCTGACTATTTCG
AAGATGTGCAAATAACAATGTATCTGGTTTTCGAGGTACTTTTAGGCAGG
TACTGGCTATACCTGAATGATGTTAACACAAAACCAATGGAAATTGTCAG
AAAACTTCTTGAGAATATCCCTTCTTGACGCTGTCTTTGTTACTACACAC
GCAAAACTTTAAATtccaaagaaacaaaaacgAAGTGTCTATAAAATTCG
ATTATCGAGGTATTTAAAATTCCTGTCATCCNAACCGTTCCGTTCTTTAC
CTTGGTCTCGACACATGATACAGCCTTTAAGAGCAACGCTGACTTCCCCA
ATACACACATAGAAATACTCTGAAACAGTATCTGTAAACGGACAGCCCGG
CTTTTTCAATTTCCGGACAGAACGACGGTTTATAATTTCAAGAGCCATTC
TAAACATACATTGTTTCGTTTCAACTGGAGTCTCAAGGGTGCAATTCACG
TAATGCCGCCCGTGCCGCCCTTGTAAATGATATAAAGGCGCTTTGAAGCT
TTTAGGTTTATTATTGGTCAAATCAATGTTGATCCTCTTCTTGACAGCTT
TGGGTTGGATGGAGACACGTCTGCTTTGGTAGCGTTTCGAACTATTTTCA
CCGACGCCGTCCGATGATTTGTgtttgtcggattttttatcaTGGCGATC
GTGACTGTAATGCGCTATGCTCGGCATAATGTAATGTCAGTACCTGACTA
TTTCGAAGATGTGCAAATAACAATGTATCTGGTTTTCGAGGTACTTTTAG
GCAGGTACTGGCTATACCTGAATGATGTTAACACAAAACCAATGGAAATT
GTCAGAAAACTTCTTGAGAATATCCCTTCTTGACGCTGTCTTTTTTACTA
CACACGCAAAACTTTAAATtccaaagaaacaaaaacgAAGTGTCTATAAA
ATTCGATTATCGAGGTATTTAAAATTCCTGTCATCCAAAAAGATTTAACC
GTAGATAAACCACATCATGCAATTAAACACAATCTCAAAAATAAAGTTAC
TTTTTGTTATACCAAATACAGGATAATGTCATCAATTTTCATATAATACT
TTTCTAATACCTTCAGTTACGATCACTGCCCATTAACAAACTGACCCAAA
TCTTTTATCatcaatgttttttaaatcGTCAGTGACGCTTTTAGCgttaa
tatttttacagaaaaccACATTGGAGGAGAGCAATTTCTCCATGAAGTGA
TACCATATTTGTTAGTTTTCCACTCCTTCCCGTATGTTTCCGCTTGATTT
GTTAGTAAACACGATATAAAAACCACATTTTGAAGTGGTCATCTGCTTAA
AGAAAACAGGCGTGCTGTTTTGAGTGCTGTGTTTTTTATTTGGATTCTTA
ATACTATTGCCCTGGCAACAACAAGTATATCGTGCACGCAATTAATGGGA
TGCTCGATATGTAAGCATAATATAAGTAGAAACCAGGAAGTTTcaaatca
ttgagtttcaagcctgaagggctagaggcgaaacttctggatgggaaatg
aaaccacttatttcccatccagaacgcccgcacgtagttttcacacaaac
gccggattgaaactaaaatctatcgctagatttcaaaaaatgtagtcctc
caaaacaaaggaaccaccag Run BLAST on NCBI protein sequence of TCONS_00020143-protein >TCONS_00020143-protein ID=TCONS_00020143-protein|Name=TCONS_00020143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MPSIAHYSHDRHDKKSDKHKSSDGVGENSSKRYQSRRVSIQPKAVKKRIN
IDLTNNKPKSFKAPLYHLQGRHGRHYVNCTLETPVETKQCMFRMALEIIN
RRSVRKLKKPGCPFTDTVSEYFYVCIGEVSVALKGCIMCRDQGKERNGMD
FYFMDLVEISKDRTILCVGCFSNLVSFHVPMDYLSMKNELLDLREKQAEG
VYVDPFLITCGY Run BLAST on NCBI transcript from alignment at sc0000349:145155..147474 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020143 ID=TCONS_00020143|Name=TCONS_00020143|organism=Clytia hemisphaerica|type=transcript|length=2320bp|location=Sequence derived from alignment at sc0000349:145155..147474 (Clytia hemisphaerica)
ctggtggttcctttgttttggaggactacattttttgaaatctagcgata
gattttagtttcaatccggcgtttgtgtgaaaactacgtgcgggcgttct
ggatgggaaataagtggtttcatttcccatccagaagtttcgcctctagc
ccttcaggcttgaaactcaatgatttgAAACTTCCTGGTTTCTACTTATA
TTATGCTTACATATCGAGCATCCCATTAATTGCGTGCACGATATACTTGT
TGTTGCCAGGGCAATAGTATTAAGAATCCAAATAAAAAACACAGCACTCA
AAACAGCACGCCTGTTTTCTTTAAGCAGATGACCACTTCAAAATGTGGTT
TTTATATCGTGTTTACTAACAAATCAAGCGGAAACATACGGGAAGGAGTG
GAAAACTAACAAATATGGTATCACTTCATGGAGAAATTGCTCTCCTCCAA
TGTggttttctgtaaaaatattaacGCTAAAAGCGTCACTGACgatttaa
aaaacattgatGATAAAAGATTTGGGTCAGTTTGTTAATGGGCAGTGATC
GTAACTGAAGGTATTAGAAAAGTATTATATGAAAATTGATGACATTATCC
TGTATTTGGTATAACAAAAAGTAACTTTATTTTTGAGATTGTGTTTAATT
GCATGATGTGGTTTATCTACGGTTAAATCTTTTTGGATGACAGGAATTTT
AAATACCTCGATAATCGAATTTTATAGACACTTcgtttttgtttctttgg
aATTTAAAGTTTTGCGTGTGTAGTAAAAAAGACAGCGTCAAGAAGGGATA
TTCTCAAGAAGTTTTCTGACAATTTCCATTGGTTTTGTGTTAACATCATT
CAGGTATAGCCAGTACCTGCCTAAAAGTACCTCGAAAACCAGATACATTG
TTATTTGCACATCTTCGAAATAGTCAGGTACTGACATTACATTATGCCGA
GCATAGCGCATTACAGTCACGATCGCCAtgataaaaaatccgacaaacAC
AAATCATCGGACGGCGTCGGTGAAAATAGTTCGAAACGCTACCAAAGCAG
ACGTGTCTCCATCCAACCCAAAGCTGTCAAGAAGAGGATCAACATTGATT
TGACCAATAATAAACCTAAAAGCTTCAAAGCGCCTTTATATCATTTACAA
GGGCGGCACGGGCGGCATTACGTGAATTGCACCCTTGAGACTCCAGTTGA
AACGAAACAATGTATGTTTAGAATGGCTCTTGAAATTATAAACCGTCGTT
CTGTCCGGAAATTGAAAAAGCCGGGCTGTCCGTTTACAGATACTGTTTCA
GAGTATTTCTATGTGTGTATTGGGGAAGTCAGCGTTGCTCTTAAAGGCTG
TATCATGTGTCGAGACCAAGGTAAAGAACGGAACGGTTNGGATGACAGGA
ATTTTAAATACCTCGATAATCGAATTTTATAGACACTTcgtttttgtttc
tttggaATTTAAAGTTTTGCGTGTGTAGTAACAAAGACAGCGTCAAGAAG
GGATATTCTCAAGAAGTTTTCTGACAATTTCCATTGGTTTTGTGTTAACA
TCATTCAGGTATAGCCAGTACCTGCCTAAAAGTACCTCGAAAACCAGATA
CATTGTTATTTGCACATCTTCGAAATAGTCAGGTACTGACATTACATTAT
GCCGAGCATAGCGCATTACAGTCACGATCGCCAtgataaaaaatccgaca
aacACAAATCATCGGACGGCGTCGGTGAAAATAGTTCGAAACGCTACCAA
AGCAGACGTGTCTCCATCCAACCCAAAGCTGTCAAGAAGAGGATCAACAT
TGATTTGACCAATAATAAACCTAAAAGCTTCAAAGCGCCTTTATATCATT
TACAAGGGCGGCACGGGCGGCATTACGTGAATTGCACCCTTGAGACTCCA
GTTGAAACGAAACAATGTATGTTTAGAATGGCTCTTGAAATTATAAACCG
TCGTTCTGTCCGGAAATTGAAAAAGCCGGGCTGTCCGTTTACAGATACTG
TTTCAGAGTATTTCTATGTGTGTATTGGGGAAGTCAGCGTTGCTCTTAAA
GGCTGTATCATGTGTCGAGACCAAGGGAAAGAACGGAACGGTATGGATTT
CTATTTTATGGACTTGGTTGAAATATCTAAAGATCGAACTATTTTATGTG
TTGGGTGCTTTTCGAATTTGGTGAGTTTTCATGTACCTATGGATTATTTG
AGTATGAAGAACGAACTTTTGGATTTAAGAGAGAAACAAGCGGAAGGTGT
TTACGTTGATCCGTTTTTGATTACTTGTGGTTATTAAAGCATGCTGCGTA
TGTTAGTGGTATGTTTGGAG Coding sequence (CDS) from alignment at sc0000349:145155..147474 >TCONS_00020143 ID=TCONS_00020143|Name=TCONS_00020143|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000349:145155..147474 (Clytia hemisphaerica)
ATGCCGAGCATAGCGCATTACAGTCACGATCGCCAtgataaaaaatccga
caaacACAAATCATCGGACGGCGTCGGTGAAAATAGTTCGAAACGCTACC
AAAGCAGACGTGTCTCCATCCAACCCAAAGCTGTCAAGAAGAGGATCAAC
ATTGATTTGACCAATAATAAACCTAAAAGCTTCAAAGCGCCTTTATATCA
TTTACAAGGGCGGCACGGGCGGCATTACGTGAATTGCACCCTTGAGACTC
CAGTTGAAACGAAACAATGTATGTTTAGAATGGCTCTTGAAATTATAAAC
CGTCGTTCTGTCCGGAAATTGAAAAAGCCGGGCTGTCCGTTTACAGATAC
TGTTTCAGAGTATTTCTATGTGTGTATTGGGGAAGTCAGCGTTGCTCTTA
AAGGCTGTATCATGTGTCGAGACCAAGGGAAAGAACGGAACGGTATGGAT
TTCTATTTTATGGACTTGGTTGAAATATCTAAAGATCGAACTATTTTATG
TGTTGGGTGCTTTTCGAATTTGGTGAGTTTTCATGTACCTATGGATTATT
TGAGTATGAAGAACGAACTTTTGGATTTAAGAGAGAAACAAGCGGAAGGT
GTTTACGTTGATCCGTTTTTGATTACTTGTGGTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020143-exon-sc0000349-1491911889:145155..147474 | TCONS_00020143-exon-sc0000349-1491911889:145155..147474 | Clytia hemisphaerica | exon |
| TCONS_00020143-exon-sc0000349-1510915933:145155..147474 | TCONS_00020143-exon-sc0000349-1510915933:145155..147474 | Clytia hemisphaerica | exon |
| TCONS_00020143-exon-sc0000349-1575043694:145155..147474 | TCONS_00020143-exon-sc0000349-1575043694:145155..147474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000349 | supercontig | sc0000349:145155..147474 . |
Blast
The following BLAST results are available for this feature:
|
