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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020193 ID=TCONS_00020193|Name=TCONS_00020193|organism=Clytia hemisphaerica|type=transcript|length=4465bp
tcagagtttaaaatgaaataaaaataaaaaatatcaacaaagcAAATACA
CTGACTGGAAACATCACCAGGATGATCAACAGTGGAGAAAGCCAGGTGAA
TGAAAACCACCACCAGCCAGGACACCAACCGAATCGAAATCTTCCAACGC
AAAATATACCTATTAATCCAGCAGAGAGAGGAAACTCATTCCATCAAAAT
GGTCCCGTGAGTATTATCAATAACAATACAACCTCAACACAACAATCATC
TGCAACCCCTTCCAGAACACCGGAAGCCACTTCTTCTCTCAAAAAACTCG
GTCGTAAAAAGAAGCTGGAAAGTCCAGCACTGATGACACATCCTGTCATG
GTGCCATCATCTGCAAACAACAGCCACGTCATCGTCAAAAACCGCTTCAA
ACACATCAAACCTACTTCAATCGTTGGTACCACTGTCACTGCAAATAGTG
TAGAACCGAAACCGAAGAATGCACTTCAAGCATTGGCAGAGTCATACGTA
GACGAGCCACCTGCCAAACAAATGCGTACAGAATCTCCTTCAACAAGCAC
GCTACAAAGCTTACAacaaaaagtgaaatctcaACAAATTATCTTACAGC
ATGCTACTGCTACCGCACAGCGTCAACGTCTCTTACAGCAAACCACACCA
GCCGTCTCATTGACTATATGCCCGAACTGTCGTCGACCCGACACGTTGTC
AGTAGATAAAGGAACAGTAAAATGTAACAATTGCAATCGCTCTTACGTCT
CTCTAAACAACACAACAGTTAGTATGCTACCACAAACATTCTACTCACCA
ACTCCTCACTCGGTAGTCTCTCAACGGTTAGCAGCCACTAACTCATCTTC
ACCTTCTAAGAATTTGAGGGGTGCAAAGAAACCAACGGAAACGATCGATT
TGATTTCAAGTGACgaagaagaagaggaagaagaatCAGATGAATCAACC
AATAAGAACGACGAACATTCTTCTACTACACAAACAAGAGACAACACTAC
CGTTTCATGTAATAATACCGAAGCAACAACTTCAACCAACTCGACAACAG
TTAGAAAAACAGACCAGATGAGACTCAAGGGAGGAGAAATTCCCAACAAT
AATAACACTGGGAACGCCACATCCGCCGACAGATCAGCATCCACCCCTAG
TCCTTCACCCGCACAAAATACCACAAATAAGTATATTTTTAACAGTGAGA
ACGCTATGTTTGGTGAACTTTACGGCAAAGCAGTGATGCCAATCAAAGTG
ACTGATAACCGAATGTACTTATCTCTCGAATGTCATATTTACAGAGATAA
CGTTGCTACAACAGAGAAATATACACTCTCAGTAGGCTCCAATGATGTCA
GTCAAGTTTATGTTTATTTTGGAAGGGTGCCATCTTTTGTCGCTATAGAA
ACAGCCAGGAAGTTTGCTACTGTCGCGTGTAAGAGGATTGGTAAAGAAGT
ATTGTGCCCAGGCTCCAGTATCCCAGAGAGACGTTATATTATTCTCGCTT
TGAAAAACGCTTTTAAAAATGACGCGGAAGCAGATTTGGAGCGACAGAAT
TTGATTGCTGCTGTAACACCGTGGGCTAGAGTTGAGTTGCTTTCTCATGC
CGATGCTATACAGTTAATCAGTCAAGCTAAACTAGAAGTCAACCAAACGG
AGGTTTGCTACGGCAACGCGGCCAAGTTGAACGGCCCGATCGAAACCATC
CTAGTTTATCCGTCATCTTTGAAATCCGGGGGTATTCCCATCACCAACCT
CGATGTCGAATGTTTAGATGAGGGAACCTATTTAAATGATATTATCATCG
ATTTCTATTTGAAATATATTTGTGAGACACTAATGACTCCCGAACAACGC
GAGAAAACGTATATATTCAACTCGTATTTTTACAAACGTTTGACACAGAA
GGCATCCAACAAAACGGATCCCGCTCAGATCCACGCTCAAGTGAAAAAAT
GGACACGTAACGtagacatttttcaaaaagattacatcatcaTACCCATT
AATGAGCATTGTCATTGGTACCTAGCCATTGTTTGTTTTCACGGCCGTCA
ACCGGTTCATTTGGAGAATGCGGAAAATGACGAAGAAGAAGACGATGATC
AAATCGAAAATAGCTTTTTGATGCAAAAGACGACCGGTACCGAAGGGATG
GAAGGAAGCGAGGACGAGGAAGCACCACAAATCGCTAACTCCCCAGATCC
TTCCTCAGATGCTGACGCTGCAGTTTCAACGACAAATCAGAACACAGATC
AATCATCCGATCAATTATCGACGAATCCTCTCCCGGTTAACGCCTTAGCT
ACTCTACCTTCTGAGGATCTACAAAACGCACCAATGCTTCCGCCTGCTGA
CGCCTCCACCGCAAACGGTGCGATAAACCCTGTCCTAACGCCCGCCAATG
GTGTTGAACCGCCCAAAGTTGTGAAAGAAGTTCCAAAACAAGCTTATGAT
CTTGAGCCGTTCGAGCGTCCTTGTATTCTCATCTTTGATTCGTTAGTTGG
AAGTGGGCACTCTCGTGTATTCACAAACCTCCGTAATTATCTGTCACAAG
AATGGCTTAGCAGAAAGTCATCTTTAGAACCAAAAGTGTTCAATAAAGAC
ACAATGAAGGGTTGTTATCCTAAGATCCCACGTCAAAACAATGACTGCGA
TTGTGGTGTGTTCCTTCTACAATACGCCGAGTTCTTTTTCTCCAAACCGA
TACGTAGTTTTCGTATGCCGGTCAATTTGCAGACTTGGTTTACCGTACAG
TCGGTTACACAAAAGAGAACTGACATTAAGACTCTGATACACAAACTAGC
TGAAGATTACCAACATTCAATAACTGAACTGAAAGCATCAAAACccaaaa
caaagaagaaaactGTACCTTCTTCTTCATCCACTACTTAAACTGTATTT
ATATTGTTTCGAGTTGTTTACCCACATTTTTATCTTCATATACTTTAGCT
CAGgttagttttttattttcttatttgaaatgTTGACATTGATGTGATGT
GATGACCAATCAGCTTAACTGTAGGATGGCTATACTTTAACATTCCCAGG
GAAAGATTCTTGGCGCATTTCTAGGTtctttccgttgtttttttccGGGC
ATACCGGATTTTTTTGCTGCATACAAAACCGCAGACTAACCGCTTAACAA
ATTGAAGATACTTTTGGACCTACTTAGAGTGCGGGTCTTTTTCTGTTGGC
AAAATGAAAATGGGGAAGGAGAAAGTTTAGCTATCCTAGGGTATATAAAC
CCTGGAGGTAGTTTGTCAAACCGGCTAACCAAATATCTGAcctgtatttt
ttttaaagtggtgaCCTTAAAGTTTACTAAGTGCTCAACAATGTGGGTGT
AAATGCACCGAGAGTGTTAGATCTATTTCTCCTAGGATACTGATGATGTT
GCGCCGTTGGACGTTAAAGTTTTAACATTGCTATGGTTTGTTTACggtta
ccattttcaaaaaaaaatcacgtcAATGATGGTGGATAGGATTTATAGAG
GCCAGCGGTCTTACTTTCACACAATATGAAAGAACTTAATggtggtcaaa
aaatcttttttgaatgaCTTTTTCCGAATAAGAATCGTATTTAGATGCCT
AAATTGTCAATAAATAGAGCTTCACGCCCGATTTAGTTTCGTGAATTTAG
GTTTTGGTAGGtttatttttatctttaccTTTCTTTTGTCCTGTTTTACT
TACTCTTTAACGGTTTATTAGCGCGGTCACCACGAGTCTACCATTGTTAT
ATccttttttaaacttgaaatgctaatgccCTTGTCCCAATCTATGAATg
ataaaaacacccccttctcacagacccggtaggatttttttagccagtgg
ggaaaaaataacagactgaaactcgatggggatttatATTCCCAATTTTT
TATGACCAGGGATTTGaattctttgttttcaagtcaattttcaagttttc
aagttgttttcagtggtttatTTAAcaattttcagcggggacaaaaattg
gagtataattttccaccggggacaatcttttggccaatttttccagtgtg
aagggttcccagtgggtctgtaagAAGTAGCAgtataaaaagttttgaat
aatAATACATACGTTTTGTCTTTGCTTTGACATTGAATCAAGTAATATGC
CTTTTCTAAAAGTACTAATAATGTTTTATTTTCCTAGGCCCGGGCTGATC
CCACTATATATCGGTGTGCCGGGTAAATCAATAGGAGACCTTAGATAGGG
TCCAAAGAAAGGTTGCTGCCAAACTTTGCATTTCCGTTATTCAACGGTAC
TAGCATTTTTCGTAGTAGAGTGGTGCCTTGCCTTCTAGGCTACTATTtga
cttgttttttttctcttgtttCCAAGGATTTTAGAAAgaagatttatttt
tattgattagTATATTACTTGAGAGAgttttttatcgaaaaagaagtTTC
TTTACATTACCTGAC Run BLAST on NCBI protein sequence of TCONS_00020193-protein >TCONS_00020193-protein ID=TCONS_00020193-protein|Name=TCONS_00020193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp
MINSGESQVNENHHQPGHQPNRNLPTQNIPINPAERGNSFHQNGPVSIIN
NNTTSTQQSSATPSRTPEATSSLKKLGRKKKLESPALMTHPVMVPSSANN
SHVIVKNRFKHIKPTSIVGTTVTANSVEPKPKNALQALAESYVDEPPAKQ
MRTESPSTSTLQSLQQKVKSQQIILQHATATAQRQRLLQQTTPAVSLTIC
PNCRRPDTLSVDKGTVKCNNCNRSYVSLNNTTVSMLPQTFYSPTPHSVVS
QRLAATNSSSPSKNLRGAKKPTETIDLISSDEEEEEEESDESTNKNDEHS
STTQTRDNTTVSCNNTEATTSTNSTTVRKTDQMRLKGGEIPNNNNTGNAT
SADRSASTPSPSPAQNTTNKYIFNSENAMFGELYGKAVMPIKVTDNRMYL
SLECHIYRDNVATTEKYTLSVGSNDVSQVYVYFGRVPSFVAIETARKFAT
VACKRIGKEVLCPGSSIPERRYIILALKNAFKNDAEADLERQNLIAAVTP
WARVELLSHADAIQLISQAKLEVNQTEVCYGNAAKLNGPIETILVYPSSL
KSGGIPITNLDVECLDEGTYLNDIIIDFYLKYICETLMTPEQREKTYIFN
SYFYKRLTQKASNKTDPAQIHAQVKKWTRNVDIFQKDYIIIPINEHCHWY
LAIVCFHGRQPVHLENAENDEEEDDDQIENSFLMQKTTGTEGMEGSEDEE
APQIANSPDPSSDADAAVSTTNQNTDQSSDQLSTNPLPVNALATLPSEDL
QNAPMLPPADASTANGAINPVLTPANGVEPPKVVKEVPKQAYDLEPFERP
CILIFDSLVGSGHSRVFTNLRNYLSQEWLSRKSSLEPKVFNKDTMKGCYP
KIPRQNNDCDCGVFLLQYAEFFFSKPIRSFRMPVNLQTWFTVQSVTQKRT
DIKTLIHKLAEDYQHSITELKASKPKTKKKTVPSSSSTT Run BLAST on NCBI transcript from alignment at sc0000350:484441..490864+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020193 ID=TCONS_00020193|Name=TCONS_00020193|organism=Clytia hemisphaerica|type=transcript|length=6424bp|location=Sequence derived from alignment at sc0000350:484441..490864+ (Clytia hemisphaerica)
tcagagtttaaaatgaaataaaaataaaaaatatcaacaaagcAAATACA
CTGACTGGAAACATCACCAGGATGATCAACAGTGGAGAAAGCCAGGTAAG
GCAATCTGTCAATTGAAATTATATCACTCAGGCAAGTTACGGCCTGTGCA
AAGAATTCGATAAATCGTGACGGCCGTGACGGCCAGTTGTTCCACCCCTT
TTTATGGGGaaatttttcgttatttttacttttcatattaatacctttct
aaaaagtcctgggccaaaaattctgtttcagccattttgggaaatttaaa
gcaaaacactttttgctgacgtcagcaaaaattagaAATACTAATATCTC
CTGGAATATTTATTGAAATGAGGTCAAATTTTGTGCAAAGGTAGGGttta
taaatatctttcattcccaaaaaaatttttttcaaaagattgatgacgtc
agcaaaaatcagcaattttcatttttcctaacaaaatgctgacgtcatca
gttttttggaaaatttttttttggaaatagaaGATATTTATAAACTCTAC
CTTcgtaccaaatttcagttcatttggATAAATATTTCAGGAGTTATtag
caatttaaatttttgctgacgtcagcaaaaagtgtttttccttAATGGCT
GAAACAGATttttggcccaggactttttggaaaggtatcaatatgatgAA
CATAACTCAGTAAAAATTTCTTCCAGAAAAGGGGTGGAACAACTGGCCGT
CACGAGTTTTATGATTTGTTGGATTTTTGTGTTGGCTGTCATGGAAATGA
CGgatatttttgacgtcaaaacttAAAATGCCATAATTCCTGAAATTNCG
TGTTGGTTGTCATGGAAATGACGGATATTTTTGACATCAAAACTTAAAAT
GCCAATaattcctgaaatttttatccaAATGAGCTCAAACTTTGCACATA
GGTAGTGTTCATGAATATCTTTGatttccaataaaaaaaatttcctataa
attgatgacgtcagcattttttgaggaaaaaagaaaattgctgatttttg
ctgacgtcatcacctttttgagaatttttttttttgaaacgagAGATATT
TACAAACCCTACCTTCGTACCAAATTTGAGTTCATTTGGATAAATATTCC
AATAGTTATTAGCagtttaaatttttgctgacgtcagcaaaaagtgtttt
tccttaattttatcaaaatggctgaaacacaatttttggcccaggacttt
ttgaAATGGCATTGATATGACGAgtgagaaaaaccaaaaatttttcccGA
AAAGGGGGTGGAACAACTGGCCGTCACGCATTATTTGATTCGTTAATTTT
TGCACAGGCCGTAACTTGCCTGAGCACTATTATTATTAGATCAATATTAT
ACACATGACGTTGGATGATTTAGGATTTTCATTTATAACCATCGAAAATC
CTTGCTATAGCATTACCTAGGATTTCAAAGATTTCAGCAccaaaaatttc
taaatcaaCTCTATTAATGGTTTGTGACatttgttcaaattttggtAGTC
TTTTCATAACTTGAACAATTCGATGATTATCGGCTCTTTTACTTTATTAT
GAATGAAATTTGATCAAGGAAACTTGAAACTCATTGTTTCTCAACCCTGT
ACTTTAGGGTAAAAGTTCAAGATTATGTCCTTTTTCAGGTGAATGAAAAC
CACCACCAGCCAGGACACCAACCGAATCGAAATCTTCCAACGCAAAATAT
ACCTATTAATCGTAagtgaaaaaaagatttataattcaatttttaattgg
TAATCATTCCTTCACCTATTGTACCTCTACAACTTGAATAGATCGGTAAA
TCCCATTGAACAAACTTGTCTTATAACAACAAAAATCCGTCCTGTCATTT
TTAATGCCTTGTTCACAACTACAGGaatcgaatgtttacattcgaaaaTA
CATTGAGTTTAAAACCTAGACGCACTCTTACGGGAATTTTTACAATCAGA
TGGTctatttaatgtttttaaatttttaagtattttaacTTTCATATCTA
TTTTTTTCCTAGCAGCAGAGAGAGGAAACTCATTCCATCAAAATGGTCCC
GTGAGTATTATCAATAACAATACAACCTCAACACAACAATCATCTGCAAC
CCCTTCCAGAACACCGGAAGCCACTTCTTCTCTCAAAAAACTCGGTCGTA
AAAAGAAGCTGGAAAGTCCAGCACTGATGACACATCCTGTCATGGTGCCA
TCATCTGCAAACAACAGCCACGTCATCGTCAAAAACCGCTTCAAACACAT
CAAACCTACTTCAATCGTTGGTACCACTGTCACTGCAAATAGTGTAGAAC
CGAAACCGAAGAATGCACTTCAAGCATTGGCAGAGTCATACGTAGACGAG
CCACCTGCCAAACAAATGCGTACAGAATCTCCTTCAACAAGCACGCTACA
AAGCTTACAacaaaaagtgaaatctcaACAAATTATCTTACAGCATGCTA
CTGCTACCGCACAGCGTCAACGTCTCTTACAGCAAACCACACCAGCCGTC
TCATTGACTATATGCCCGAACTGTCGTCGACCCGACACGTTGTCAGTAGA
TAAAGGAACAGTAAAATGTAACAATTGCAATCGCTCTTACGTCTCTCTAA
ACAACACAACAGTTAGTATGCTACCACAAACATTCTACTCACCAACTCCT
CACTCGGTAGTCTCTCAACGGTTAGCAGCCACTAACTCATCTTCACCTTC
TAAGAATTTGAGGGGTGCAAAGAAACCAACGGAAACGATCGATTTGATTT
CAAGTGACgaagaagaagaggaagaagaatCAGATGAATCAACCAATAAG
AACGACGAACATTCTTCTACTACACAAACAAGAGACAACACTACCGTTTC
ATGTAATAATACCGAAGCAACAACTTCAACCAACTCGACAACAGTTAGAA
AAACAGACCAGATGAGACTCAAGGGAGGAGAAATTCCCAACAATAATAAC
ACTGGGAACGCCACATCCGCCGACAGATCAGCATCCACCCCTAGTCCTTC
ACCCGCACAAAATACCACAAATAAGTATATTTTTAACAGTGAGAACGCTA
TGTTTGGTGAACTTTACGGCAAAGCAGTGATGCCAATCAAAGTGACTGAT
AACCGAATGTACTTATCTCTCGAATGTCATATTTACAGAGATAACGTTGC
TACAACAGAGAAATATACACTCTCAGTAGGCTCCAATGATGTCAGTCAAG
TTTATGTTTATTTTGGAAGGGTGCCATCTTTTGTCGCTATAGAAACAGCC
AGGAAGTTTGCTACTGTCGCGTGTAAGAGGATTGGTAAAGAAGTATTGTG
CCCAGGCTCCAGTATCCCAGAGAGACGTTATATTATTCTCGCTTTGAAAA
ACGCTTTTAAAAATGACGCGGAAGCAGATTTGGAGCGACAGAATTTGATT
GCTGCTGTAACACCGTGGGCTAGAGTTGAGTTGCTTTCTCATGCCGATGC
TATACAGTTAATCAGTCAAGCTAAACTAGAAGTCAACCAAACGGAGGTTT
GCTACGGCAACGCGGCCAAGTTGAACGGCCCGATCGAAACCATCCTAGTT
TATCCGTCATCTTTGAAATCCGGGGGTATTCCCATCACCAACCTCGATGT
CGAATGTTTAGATGAGGGAACCTATTTAAATGATATTATCATCGATTTCT
ATTTGAAATATATTTGTGAGACACTAATGACTCCCGAACAACGCGAGAAA
ACGTATATATTCAACTCGTATTTTTACAAACGTTTGACACAGAAGGCATC
CAACAAAACGGATCCCGCTCAGATCCACGCTCAAGTGAAAAAATGGACAC
GTAACGtagacatttttcaaaaagattacatcatcaTACCCATTAATGAG
CATTGTCATTGGTACCTAGCCATTGTTTGTTTTCACGGCCGTCAACCGGT
TCATTTGGAGAATGCGGAAAATGACGAAGAAGAAGACGATGATCAAATCG
AAAATAGCTTTTTGATGCAAAAGACGACCGGTACCGAAGGGATGGAAGGA
AGCGAGGACGAGGAAGCACCACAAATCGCTAACTCCCCAGATCCTTCCTC
AGATGCTGACGCTGCAGTTTCAACGACAAATCAGAACACAGATCAATCAT
CCGATCAATTATCGACGAATCCTCTCCCGGTTAACGCCTTAGCTACTCTA
CCTTCTGAGGATCTACAAAACGCACCAATGCTTCCGCCTGCTGACGCCTC
CACCGCAAACGGTGCGATAAACCCTGTCCTAACGCCCGCCAATGGTGTTG
AACCGCCCAAAGTTGTGAAAGAAGTTCCAAAACAAGCTTATGATCTTGAG
CCGTTCGAGCGTCCTTGTATTCTCATCTTTGATTCGTTAGTTGGAAGTGG
GCACTCTCGTGTATTCACAAACCTCCGTAATTATCTGTCACAAGAATGGC
TTAGCAGAAAGTCATCTTTAGAACCAAAAGTGTTCAATAAAGACACAATG
AAGGGTTGTTATCCTAAGATCCCACGTCAAAACAATGACTGCGATTGTGG
TGTGTTCCTTCTACAATACGCCGAGTTCTTTTTCTCCAAACCGATACGTA
GTTTTCGTATGCCGGTCAATTTGCAGACTTGGTTTACCGTACAGTCGGTT
ACACAAAAGAGAACTGACATTAAGACTCTGATACACAAACTAGCTGAAGA
TTACCAACATTCAATAACTGAACTGAAAGCATCAAAACccaaaacaaaga
agaaaactGTACCTTCTTCTTCATCCACTACTTAAACTGTATTTATATTG
TTTCGAGTTGTTTACCCACATTTTTATCTTCATATANTTCCACTACTTAA
ACTATATTTATATTGTTTCGAGTTGTTTATACACATTTTTATCTTCATAT
ACTTTAGCTCAGgttagttttttattttcttatttgaaatgTTGACATTG
ATGTGATGTGATGACCAATCAGCTTAACTGTAGGATGGCTATACTTTAAC
ATTCCCAGGGAAAGATTCTTGGCGCATTTCTAGGTtctttccgttgtttt
tttccGGGCATACCGGATTTTTTTGCTGCATACAAAACCGCAGACTAACC
GCTTAACAAATTGAAGATACTTTTGGACCTACTTAGAGTGCGGGTCTTTT
TCTGTTGGCAAAATGAAAATGGGGAAGGAGAAAGTTTAGCTATCCTAGGG
TATATAAACCCTGGAGGTAGTTTGTCAAACCGGCTAACCAAATATCTGAc
ctgtattttttttaaagtggtgaCCTTAAAGTTTACTAAGTGCTCAACAA
TGTGGGTGTAAATGCACCGAGAGTGTTAGATCTATTTCTCCTAGGATACT
GATGATGTTGCGCCGTTGGACGTTAAAGTTTTAACATTGCTATGGTTTGT
TTACggttaccattttcaaaaaaaaatcacgtcAATGATGGTGGATAGGA
TTTATAGAGGCCAGCGGTCTTACTTTCACACAATATGAAAGAACTTAATg
gtggtcaaaaaatcttttttgaatgaCTTTTTCCGAATAAGAATCGTATT
TAGATGCCTAAATTGTCAATAAATAGAGCTTCACGCCCGATTTAGTTTCG
TGAATTTAGGTTTTGGTAGGtttatttttatctttaccTTTCTTTTGTCC
TGTTTTACTTACTCTTTAACGGTTTATTAGCGCGGTCACCACGAGTCTAC
CATTGTTATATccttttttaaacttgaaatgctaatgccCTTGTCCCAAT
CTATGAATgataaaaacacccccttctcacagacccggtaggattttttt
agccagtggggaaaaaataacagactgaaactcgatggggatttatATTC
CCAATTTTTTATGACCAGGGATTTGaattctttgttttcaagtcaatttt
caagttttcaagttgttttcagtggtttatTTAAcaattttcagcgggga
caaaaattggagtataattttccaccggggacaatcttttggccaatttt
tccagtgtgaagggttcccagtgggtctgtaagAAGTAGCAgtataaaaa
gttttgaataatAATACATACGTTTTGTCTTTGCTTTGACATTGAATCAA
GTAATATGCCTTTTCTAAAAGTACTAATAATGTTTTATTTTCCTAGGCCC
GGGCTGATCCCACTATATATCGGTGTGCCGGGTAAATCAATAGGAGACCT
TAGATAGGGTCCAAAGAAAGGTTGCTGCCAAACTTTGCATTTCCGTTATT
CAACGGTACTAGCATTTTTCGTAGTAGAGTGGTGCCTTGCCTTCTAGGCT
ACTATTtgacttgttttttttctcttgtttCCAAGGATTTTAGAAAgaag
atttatttttattgattagTATATTACTTGAGAGAgttttttatcgaaaa
agaagtTTCTTTACATTACCTGAC Coding sequence (CDS) from alignment at sc0000350:484441..490864+ >TCONS_00020193 ID=TCONS_00020193|Name=TCONS_00020193|organism=Clytia hemisphaerica|type=CDS|length=8460bp|location=Sequence derived from alignment at sc0000350:484441..490864+ (Clytia hemisphaerica)
ATGATCAACAGTGGAGAAAGCCAGGTGAATGAAAACCACCACCAGCCAGG
ACACCAACCGAATCGAAATCTTCCAACGCAAAATATACCTATTAATCCAG
CAGAGAGAGGAAACTCATTCCATCAAAATGGTCCCGTGAGTATTATCAAT
AACAATACAACCTCAACACAACAATCATCTGCAACCCCTTCCAGAACACC
GGAAGCCACTTCTTCTCTCAAAAAACTCGGTCGTAAAAAGAAGCTGGAAA
GTCCAGCACTGATGACACATCCTGTCATGGTGCCATCATCTGCAAACAAC
AGCCACGTCATCGTCAAAAACCGCTTCAAACACATCAAACCTACTTCAAT
CGTTGGTACCACTGTCACTGCAAATAGTGTAGAACCGAAACCGAAGAATG
CACTTCAAGCATTGGCAGAGTCATACGTAGACGAGCCACCTGCCAAACAA
ATGCGTACAGAATCTCCTTCAACAAGCACGCTACAAAGCTTACAacaaaa
agtgaaatctcaACAAATTATCTTACAGCATGCTACTGCTACCGCACAGC
GTCAACGTCTCTTACAGCAAACCACACCAGCCGTCTCATTGACTATATGC
CCGAACTGTCGTCGACCCGACACGTTGTCAGTAGATAAAGGAACAGTAAA
ATGTAACAATTGCAATCGCTCTTACGTCTCTCTAAACAACACAACAGTTA
GTATGCTACCACAAACATTCTACTCACCAACTCCTCACTCGGTAGTCTCT
CAACGGTTAGCAGCCACTAACTCATCTTCACCTTCTAAGAATTTGAGGGG
TGCAAAGAAACCAACGGAAACGATCGATTTGATTTCAAGTGACgaagaag
aagaggaagaagaatCAGATGAATCAACCAATAAGAACGACGAACATTCT
TCTACTACACAAACAAGAGACAACACTACCGTTTCATGTAATAATACCGA
AGCAACAACTTCAACCAACTCGACAACAGTTAGAAAAACAGACCAGATGA
GACTCAAGGGAGGAGAAATTCCCAACAATAATAACACTGGGAACGCCACA
TCCGCCGACAGATCAGCATCCACCCCTAGTCCTTCACCCGCACAAAATAC
CACAAATAAGTATATTTTTAACAGTGAGAACGCTATGTTTGGTGAACTTT
ACGGCAAAGCAGTGATGCCAATCAAAGTGACTGATAACCGAATGTACTTA
TCTCTCGAATGTCATATTTACAGAGATAACGTTGCTACAACAGAGAAATA
TACACTCTCAGTAGGCTCCAATGATGTCAGTCAAGTTTATGTTTATTTTG
GAAGGGTGCCATCTTTTGTCGCTATAGAAACAGCCAGGAAGTTTGCTACT
GTCGCGTGTAAGAGGATTGGTAAAGAAGTATTGTGCCCAGGCTCCAGTAT
CCCAGAGAGACGTTATATTATTCTCGCTTTGAAAAACGCTTTTAAAAATG
ACGCGGAAGCAGATTTGGAGCGACAGAATTTGATTGCTGCTGTAACACCG
TGGGCTAGAGTTGAGTTGCTTTCTCATGCCGATGCTATACAGTTAATCAG
TCAAGCTAAACTAGAAGTCAACCAAACGGAGGTTTGCTACGGCAACGCGG
CCAAGTTGAACGGCCCGATCGAAACCATCCTAGTTTATCCGTCATCTTTG
AAATCCGGGGGTATTCCCATCACCAACCTCGATGTCGAATGTTTAGATGA
GGGAACCTATTTAAATGATATTATCATCGATTTCTATTTGAAATATATTT
GTGAGACACTAATGACTCCCGAACAACGCGAGAAAACGTATATATTCAAC
TCGTATTTTTACAAACGTTTGACACAGAAGGCATCCAACAAAACGGATCC
CGCTCAGATCCACGCTCAAGTGAAAAAATGGACACGTAACGtagacattt
ttcaaaaagattacatcatcaTACCCATTAATGAGCATTGTCATTGGTAC
CTAGCCATTGTTTGTTTTCACGGCCGTCAACCGGTTCATTTGGAGAATGC
GGAAAATGACGAAGAAGAAGACGATGATCAAATCGAAAATAGCTTTTTGA
TGCAAAAGACGACCGGTACCGAAGGGATGGAAGGAAGCGAGGACGAGGAA
GCACCACAAATCGCTAACTCCCCAGATCCTTCCTCAGATGCTGACGCTGC
AGTTTCAACGACAAATCAGAACACAGATCAATCATCCGATCAATTATCGA
CGAATCCTCTCCCGGTTAACGCCTTAGCTACTCTACCTTCTGAGGATCTA
CAAAACGCACCAATGCTTCCGCCTGCTGACGCCTCCACCGCAAACGGTGC
GATAAACCCTGTCCTAACGCCCGCCAATGGTGTTGAACCGCCCAAAGTTG
TGAAAGAAGTTCCAAAACAAGCTTATGATCTTGAGCCGTTCGAGCGTCCT
TGTATTCTCATCTTTGATTCGTTAGTTGGAAGTGGGCACTCTCGTGTATT
CACAAACCTCCGTAATTATCTGTCACAAGAATGGCTTAGCAGAAAGTCAT
CTTTAGAACCAAAAGTGTTCAATAAAGACACAATGAAGGGTTGTTATCCT
AAGATCCCACGTCAAAACAATGACTGCGATTGTGGTGTGTTCCTTCTACA
ATACGCCGAGTTCTTTTTCTCCAAACCGATACGTAGTTTTCGTATGCCGG
TCAATTTGCAGACTTGGTTTACCGTACAGTCGGTTACACAAAAGAGAACT
GACATTAAGACTCTGATACACAAACTAGCTGAAGATTACCAACATTCAAT
AACTGAACTGAAAGCATCAAAACccaaaacaaagaagaaaactGTACCTT
CTTCTTCATCCACTACTTAAATGATCAACAGTGGAGAAAGCCAGGTGAAT
GAAAACCACCACCAGCCAGGACACCAACCGAATCGAAATCTTCCAACGCA
AAATATACCTATTAATCCAGCAGAGAGAGGAAACTCATTCCATCAAAATG
GTCCCGTGAGTATTATCAATAACAATACAACCTCAACACAACAATCATCT
GCAACCCCTTCCAGAACACCGGAAGCCACTTCTTCTCTCAAAAAACTCGG
TCGTAAAAAGAAGCTGGAAAGTCCAGCACTGATGACACATCCTGTCATGG
TGCCATCATCTGCAAACAACAGCCACGTCATCGTCAAAAACCGCTTCAAA
CACATCAAACCTACTTCAATCGTTGGTACCACTGTCACTGCAAATAGTGT
AGAACCGAAACCGAAGAATGCACTTCAAGCATTGGCAGAGTCATACGTAG
ACGAGCCACCTGCCAAACAAATGCGTACAGAATCTCCTTCAACAAGCACG
CTACAAAGCTTACAacaaaaagtgaaatctcaACAAATTATCTTACAGCA
TGCTACTGCTACCGCACAGCGTCAACGTCTCTTACAGCAAACCACACCAG
CCGTCTCATTGACTATATGCCCGAACTGTCGTCGACCCGACACGTTGTCA
GTAGATAAAGGAACAGTAAAATGTAACAATTGCAATCGCTCTTACGTCTC
TCTAAACAACACAACAGTTAGTATGCTACCACAAACATTCTACTCACCAA
CTCCTCACTCGGTAGTCTCTCAACGGTTAGCAGCCACTAACTCATCTTCA
CCTTCTAAGAATTTGAGGGGTGCAAAGAAACCAACGGAAACGATCGATTT
GATTTCAAGTGACgaagaagaagaggaagaagaatCAGATGAATCAACCA
ATAAGAACGACGAACATTCTTCTACTACACAAACAAGAGACAACACTACC
GTTTCATGTAATAATACCGAAGCAACAACTTCAACCAACTCGACAACAGT
TAGAAAAACAGACCAGATGAGACTCAAGGGAGGAGAAATTCCCAACAATA
ATAACACTGGGAACGCCACATCCGCCGACAGATCAGCATCCACCCCTAGT
CCTTCACCCGCACAAAATACCACAAATAAGTATATTTTTAACAGTGAGAA
CGCTATGTTTGGTGAACTTTACGGCAAAGCAGTGATGCCAATCAAAGTGA
CTGATAACCGAATGTACTTATCTCTCGAATGTCATATTTACAGAGATAAC
GTTGCTACAACAGAGAAATATACACTCTCAGTAGGCTCCAATGATGTCAG
TCAAGTTTATGTTTATTTTGGAAGGGTGCCATCTTTTGTCGCTATAGAAA
CAGCCAGGAAGTTTGCTACTGTCGCGTGTAAGAGGATTGGTAAAGAAGTA
TTGTGCCCAGGCTCCAGTATCCCAGAGAGACGTTATATTATTCTCGCTTT
GAAAAACGCTTTTAAAAATGACGCGGAAGCAGATTTGGAGCGACAGAATT
TGATTGCTGCTGTAACACCGTGGGCTAGAGTTGAGTTGCTTTCTCATGCC
GATGCTATACAGTTAATCAGTCAAGCTAAACTAGAAGTCAACCAAACGGA
GGTTTGCTACGGCAACGCGGCCAAGTTGAACGGCCCGATCGAAACCATCC
TAGTTTATCCGTCATCTTTGAAATCCGGGGGTATTCCCATCACCAACCTC
GATGTCGAATGTTTAGATGAGGGAACCTATTTAAATGATATTATCATCGA
TTTCTATTTGAAATATATTTGTGAGACACTAATGACTCCCGAACAACGCG
AGAAAACGTATATATTCAACTCGTATTTTTACAAACGTTTGACACAGAAG
GCATCCAACAAAACGGATCCCGCTCAGATCCACGCTCAAGTGAAAAAATG
GACACGTAACGtagacatttttcaaaaagattacatcatcaTACCCATTA
ATGAGCATTGTCATTGGTACCTAGCCATTGTTTGTTTTCACGGCCGTCAA
CCGGTTCATTTGGAGAATGCGGAAAATGACGAAGAAGAAGACGATGATCA
AATCGAAAATAGCTTTTTGATGCAAAAGACGACCGGTACCGAAGGGATGG
AAGGAAGCGAGGACGAGGAAGCACCACAAATCGCTAACTCCCCAGATCCT
TCCTCAGATGCTGACGCTGCAGTTTCAACGACAAATCAGAACACAGATCA
ATCATCCGATCAATTATCGACGAATCCTCTCCCGGTTAACGCCTTAGCTA
CTCTACCTTCTGAGGATCTACAAAACGCACCAATGCTTCCGCCTGCTGAC
GCCTCCACCGCAAACGGTGCGATAAACCCTGTCCTAACGCCCGCCAATGG
TGTTGAACCGCCCAAAGTTGTGAAAGAAGTTCCAAAACAAGCTTATGATC
TTGAGCCGTTCGAGCGTCCTTGTATTCTCATCTTTGATTCGTTAGTTGGA
AGTGGGCACTCTCGTGTATTCACAAACCTCCGTAATTATCTGTCACAAGA
ATGGCTTAGCAGAAAGTCATCTTTAGAACCAAAAGTGTTCAATAAAGACA
CAATGAAGGGTTGTTATCCTAAGATCCCACGTCAAAACAATGACTGCGAT
TGTGGTGTGTTCCTTCTACAATACGCCGAGTTCTTTTTCTCCAAACCGAT
ACGTAGTTTTCGTATGCCGGTCAATTTGCAGACTTGGTTTACCGTACAGT
CGGTTACACAAAAGAGAACTGACATTAAGACTCTGATACACAAACTAGCT
GAAGATTACCAACATTCAATAACTGAACTGAAAGCATCAAAACccaaaac
aaagaagaaaactGTACCTTCTTCTTCATCCACTACTTAAATGATCAACA
GTGGAGAAAGCCAGGTGAATGAAAACCACCACCAGCCAGGACACCAACCG
AATCGAAATCTTCCAACGCAAAATATACCTATTAATCCAGCAGAGAGAGG
AAACTCATTCCATCAAAATGGTCCCGTGAGTATTATCAATAACAATACAA
CCTCAACACAACAATCATCTGCAACCCCTTCCAGAACACCGGAAGCCACT
TCTTCTCTCAAAAAACTCGGTCGTAAAAAGAAGCTGGAAAGTCCAGCACT
GATGACACATCCTGTCATGGTGCCATCATCTGCAAACAACAGCCACGTCA
TCGTCAAAAACCGCTTCAAACACATCAAACCTACTTCAATCGTTGGTACC
ACTGTCACTGCAAATAGTGTAGAACCGAAACCGAAGAATGCACTTCAAGC
ATTGGCAGAGTCATACGTAGACGAGCCACCTGCCAAACAAATGCGTACAG
AATCTCCTTCAACAAGCACGCTACAAAGCTTACAacaaaaagtgaaatct
caACAAATTATCTTACAGCATGCTACTGCTACCGCACAGCGTCAACGTCT
CTTACAGCAAACCACACCAGCCGTCTCATTGACTATATGCCCGAACTGTC
GTCGACCCGACACGTTGTCAGTAGATAAAGGAACAGTAAAATGTAACAAT
TGCAATCGCTCTTACGTCTCTCTAAACAACACAACAGTTAGTATGCTACC
ACAAACATTCTACTCACCAACTCCTCACTCGGTAGTCTCTCAACGGTTAG
CAGCCACTAACTCATCTTCACCTTCTAAGAATTTGAGGGGTGCAAAGAAA
CCAACGGAAACGATCGATTTGATTTCAAGTGACgaagaagaagaggaaga
agaatCAGATGAATCAACCAATAAGAACGACGAACATTCTTCTACTACAC
AAACAAGAGACAACACTACCGTTTCATGTAATAATACCGAAGCAACAACT
TCAACCAACTCGACAACAGTTAGAAAAACAGACCAGATGAGACTCAAGGG
AGGAGAAATTCCCAACAATAATAACACTGGGAACGCCACATCCGCCGACA
GATCAGCATCCACCCCTAGTCCTTCACCCGCACAAAATACCACAAATAAG
TATATTTTTAACAGTGAGAACGCTATGTTTGGTGAACTTTACGGCAAAGC
AGTGATGCCAATCAAAGTGACTGATAACCGAATGTACTTATCTCTCGAAT
GTCATATTTACAGAGATAACGTTGCTACAACAGAGAAATATACACTCTCA
GTAGGCTCCAATGATGTCAGTCAAGTTTATGTTTATTTTGGAAGGGTGCC
ATCTTTTGTCGCTATAGAAACAGCCAGGAAGTTTGCTACTGTCGCGTGTA
AGAGGATTGGTAAAGAAGTATTGTGCCCAGGCTCCAGTATCCCAGAGAGA
CGTTATATTATTCTCGCTTTGAAAAACGCTTTTAAAAATGACGCGGAAGC
AGATTTGGAGCGACAGAATTTGATTGCTGCTGTAACACCGTGGGCTAGAG
TTGAGTTGCTTTCTCATGCCGATGCTATACAGTTAATCAGTCAAGCTAAA
CTAGAAGTCAACCAAACGGAGGTTTGCTACGGCAACGCGGCCAAGTTGAA
CGGCCCGATCGAAACCATCCTAGTTTATCCGTCATCTTTGAAATCCGGGG
GTATTCCCATCACCAACCTCGATGTCGAATGTTTAGATGAGGGAACCTAT
TTAAATGATATTATCATCGATTTCTATTTGAAATATATTTGTGAGACACT
AATGACTCCCGAACAACGCGAGAAAACGTATATATTCAACTCGTATTTTT
ACAAACGTTTGACACAGAAGGCATCCAACAAAACGGATCCCGCTCAGATC
CACGCTCAAGTGAAAAAATGGACACGTAACGtagacatttttcaaaaaga
ttacatcatcaTACCCATTAATGAGCATTGTCATTGGTACCTAGCCATTG
TTTGTTTTCACGGCCGTCAACCGGTTCATTTGGAGAATGCGGAAAATGAC
GAAGAAGAAGACGATGATCAAATCGAAAATAGCTTTTTGATGCAAAAGAC
GACCGGTACCGAAGGGATGGAAGGAAGCGAGGACGAGGAAGCACCACAAA
TCGCTAACTCCCCAGATCCTTCCTCAGATGCTGACGCTGCAGTTTCAACG
ACAAATCAGAACACAGATCAATCATCCGATCAATTATCGACGAATCCTCT
CCCGGTTAACGCCTTAGCTACTCTACCTTCTGAGGATCTACAAAACGCAC
CAATGCTTCCGCCTGCTGACGCCTCCACCGCAAACGGTGCGATAAACCCT
GTCCTAACGCCCGCCAATGGTGTTGAACCGCCCAAAGTTGTGAAAGAAGT
TCCAAAACAAGCTTATGATCTTGAGCCGTTCGAGCGTCCTTGTATTCTCA
TCTTTGATTCGTTAGTTGGAAGTGGGCACTCTCGTGTATTCACAAACCTC
CGTAATTATCTGTCACAAGAATGGCTTAGCAGAAAGTCATCTTTAGAACC
AAAAGTGTTCAATAAAGACACAATGAAGGGTTGTTATCCTAAGATCCCAC
GTCAAAACAATGACTGCGATTGTGGTGTGTTCCTTCTACAATACGCCGAG
TTCTTTTTCTCCAAACCGATACGTAGTTTTCGTATGCCGGTCAATTTGCA
GACTTGGTTTACCGTACAGTCGGTTACACAAAAGAGAACTGACATTAAGA
CTCTGATACACAAACTAGCTGAAGATTACCAACATTCAATAACTGAACTG
AAAGCATCAAAACccaaaacaaagaagaaaactGTACCTTCTTCTTCATC
CACTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020193-exon-sc0000350-1491911889:484441..484535 | TCONS_00020193-exon-sc0000350-1491911889:484441..484535 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1510915933:484441..484535 | TCONS_00020193-exon-sc0000350-1510915933:484441..484535 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1575043694:484441..484535 | TCONS_00020193-exon-sc0000350-1575043694:484441..484535 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1491911889:486129..486201 | TCONS_00020193-exon-sc0000350-1491911889:486129..486201 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1510915933:486129..486201 | TCONS_00020193-exon-sc0000350-1510915933:486129..486201 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1575043694:486129..486201 | TCONS_00020193-exon-sc0000350-1575043694:486129..486201 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1491911889:486503..489259 | TCONS_00020193-exon-sc0000350-1491911889:486503..489259 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1510915933:486503..489259 | TCONS_00020193-exon-sc0000350-1510915933:486503..489259 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1575043694:486503..489259 | TCONS_00020193-exon-sc0000350-1575043694:486503..489259 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1491911889:489325..490864 | TCONS_00020193-exon-sc0000350-1491911889:489325..490864 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1510915933:489325..490864 | TCONS_00020193-exon-sc0000350-1510915933:489325..490864 | Clytia hemisphaerica | exon |
| TCONS_00020193-exon-sc0000350-1575043694:489325..490864 | TCONS_00020193-exon-sc0000350-1575043694:489325..490864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:484441..490864 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003653 | Peptidase_C48_C |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
BLAST of TCONS_00020193 vs. Swiss-Prot (Human)
Match: SENP6 (Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 1.504e-35 Identity = 70/163 (42.94%), Postives = 104/163 (63.80%), Query Frame = 3
Query: 1578 RVELLSHADAIQLISQAKLEVNQTEVCYG-NAAKLNGPIETILVYPSSLKSGGIPITNLDVECLDEGTYLNDIIIDFYLKYICETLMTPEQREKTYIFNSYFYKRLTQK------ASNKTDPAQIHAQVKKWTRNVDIFQKDYIIIPINEHCHWYLAIVCFHG 2045
+++ +S IQL S+ + + E G N GP+E ++VYP GGI +TN D+ CL+EG +LND+IIDFYLKY+ + E ++ +IF+S+FYKRL Q+ +N + + H +VK WTR+VDIF+KD+I +P+NE HW+LA+VCF G
Sbjct: 613 KIKTVSFESKIQLRSKQEFQFFDEEEETGENHTIFIGPVEKLIVYPPPPAKGGISVTNEDLHCLNEGEFLNDVIIDFYLKYLVLEKLKKEDADRIHIFSSFFYKRLNQRERRNHETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVVCFPG 775 HSP 2 Score: 118.627 bits (296), Expect = 1.088e-26 Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 3
Query: 2463 ERPCILIFDSLVGSGHSRVFTNLRNYLSQEWLSRKSSLEPKVFNKDTMKGCYPKIPRQNNDCDCGVFLLQYAEFFFSKPIRSFRMPVNLQTWFTVQSVTQKRTDIKTLIHKLAED 2807
++PCIL+ DSL G S V LR YL EW +K S + F+KD MKG PK+P+QNN DCGV++LQY E FF PI SF +P+NL WF + KR +I+ +I KL ED
Sbjct: 969 KQPCILLMDSLRGPSRSNVVKILREYLEVEWEVKKGS--KRSFSKDVMKGSNPKVPQQNNFSDCGVYVLQYVESFFENPILSFELPMNLANWFPPPRMRTKREEIRNIILKLQED 1081
The following BLAST results are available for this feature:
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