TCONS_00020227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020227
Unique NameTCONS_00020227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020227 ID=TCONS_00020227|Name=TCONS_00020227|organism=Clytia hemisphaerica|type=transcript|length=3628bp
ttttttcgttcgttcgttgaGCTGGTCTATTATAAGGTATAGTTGTTAAA
GAGACAAGTGGATTGAACAAAAAATCTCGATTTCTGAGGAGACTTGAATC
AATCAAGATTGTTAAATTCCATAGCTGAAGTGATTGAAGACCCGGTCAAG
CCGACCTTGATTCAACAAGAACTTGAATGCTTGAACGAAGAAATCATCAA
GAATCTGTTAGACGAACAAGATGACATCCTCTTAAAATCCTCATCCTCGT
CAACAAACTCTACCGCTTCGCTTGGTGTACCTTCTGCATCGACGGCGTCA
TCGCAGCGATCGCTGAATGATACGCCAACGTACGGCAGTTCTGACGGTGA
AGCATTTACCGGCACTTTCTACAACGGCTCCATGATTTATTCACCCGCAC
AAACGATCGAGGGGTCAGTTTCCCCGCCATCCAACCGACGTTTCCCGCCC
ATGATGGAAGCGTTAAAACTTACAGATCGATTTGACGCCCCACACACGCC
ACTCACTAACGGGCACACTTTACCGCGCAGCCACAGGCGGACACGAACCA
CATCGAGCGGCAGTTCAATAAGCGATGATGGTGCACTTTCGTCGCCTACT
TCACCTTTCGGTCGCGGCACTTTCGGCAGACGATTCAGAAGCACTGGAAG
TAGTACGTCCTCGATCTCCTCGACGAGCGACTTATTTCAAGAAGTGTTGA
GATACCCGGCCGTGAAATTCGATAAAGACACGGTTGACTTGTGGTATCGA
CCAAATATCACACGAGATGAAGCAACAAGCTTACTTCGAGACGCAGAGCC
AGGAAGTTTCTTGGTACGAGATAGTCAAACCTATGATGGAGCTTTCGGAT
TAGCTGTGAAAGTGGATTCGCCACCTGCCAGTGTCCTGAAACAAGTCGAT
GGAGATGTTTCGAAAATCGATTTAGAGAACGAACTGATACGTCACTTTCT
TATCGAACCTTCGAAGAAAGGAGTGCGCTTGAAGGGAAGCAACGAAGAAC
CAACTTTCCCTAGCCTAGTTGCCCTCATCTATCAACATTCCATCACTAAG
ATGGCCCTCCCAATCACTCTTCTTATACCTTACAAAGACTCAGTTGACGG
TGGCAACCCTGCAGACAACCGACTGTCAAAACTCAGCGAAACACAATTAC
TGGTCAAAGGAGCAGCATGTGATTTATTATACCTGGGCGGTGTGAAGGTG
GACAAGCTAACGGGTGATGGAGCTGTCCAGTACGCCATGAACAAGGTGGC
ATCACTTTCCACCCAATTAAAGACTACAATCGTTAACATCAAAGTCAACC
AAGATGGTATCACCCTCACCGATAACAATCGAAGGATGTTTTTCCGGCAA
CATTTCCAGATGGCGAATGTCCTACATTGTGGAGTGGATCCAAAATCACG
ACAAGTTAATTTGAAGACATTCGCGAATCGTGAAGACAAAGATGTCGGTT
GTTTCGGCTTTGTGGTAGAGAATGAAAGGAAGACAGAACATCAATGTTAC
ATGTTCGCTGAACTGGAGCAAGATCAACCAGCTTCGGCCGTCATCAATTT
CATACATAAAGCCATGCGGTACGCTCGTGTATAAACTTTAATGGTGGTGT
TGGATTATGTTTCAGTTGAGAAGCAAACGTAATGGAGAAAAATGGTTCCT
ATTCCACATGAGTAGCGTTCGATACGTAGTTTGGCTCAACGGTAGAAGAG
CACGCGTTCTCAGACCAGATGTAGAATTCGGGAAACCTATATAATACAAT
CATGTTAGaactgtaaaataaaaaaaaatcatctaaCGAAAAACAAATCT
GCTGTGGTAACAAAATAAGCATAAGCTAAACAAAGACATATAAAAGCAAA
TTTAATTTCGAAGACAAAAGATGGAAGATGTTTTATTGGTAAAAtacaga
ctggtctgtaaattatatttatacactttttttatttacttactGTCATG
GTTTCGGTGACAGCATGCAGGGATTTCCCGAGCTGTTAATTAAAATATAC
ATTTAATTGTAAGCATTTTACTGTACAAAAAATTATTCACTCTCAGAGGG
TCAACGATATAGGTTGGTTCAAcgctcaaaattttcaaagacaaccTTTC
AGAACATTTTGCTACTCAGTACTCAAATACTTGTTTTTTacaagcataac
gtttataagcatacgtaGGCTCACTATTTGGTACccaaacaatggctcta
ttgaaCAATCGAATGCTAATCACATTGCGAGCCTGGTATAGGTGCAGACA
CTTgctcataaaaaaacatgtaatatcGAATTCAAACTGGTGTCTCTAag
agaaaaagtaaatttttgttttgaagaattttcataCTGTTGGCTTCTTG
GCTACAATACATGGGAACTTGATTTGATTAAATAAAAAGCAATTTGTTAT
ACTTTGTAATATTATCGcgaaatatatttgaaaatattccaaTGTTTTTT
CTACGTTTTCTAAGATATATAGTTTTACAATATTCCTTCTTTgttattta
aaaagataaacacCCTTTATTATGTAAATAGATCTTATcttaaaaaatct
ataaaattaaCATCTTCTGACTTTATATCCTAAACCTCGAATAAAAGGTT
GCTTTCTGATGCAGATCAATATGATAATTCTAATTCGCAATGATGGACTN
ATGATCTGGTCGAATGTCTTCTGACTTTACATCCTCAACCTCGAATAAAA
TGTTGCTTTCTGATGCAGATCAATATGATAATTCTAATTCGCAATGATGG
ACTTATTGGTATACTTAAAAAGAgctaaaaacagtaaaaaaggcctttaa
aaaatgtacaaaatctAATCAGAGgataattatcaaaataaataattttt
caagttCTATAATAAGATATTTTAGGTGTGACTCGTCTACATCTTGAATT
GAGTTTCATCTATAAGAAGTATGTAAAAAACATTGTTGAATCTCATAACT
TGGCACTGCTTGGCAATGTACCCATTTAATAGCATATAGTCATGCACAAc
gttaaaaggaaaaaaatcccaaaaacaCAGCAAGCAGCAaactcaaattt
taaagcttttatcACCTTTCTCCAGCCTACATAAAAAAGCATGCAGGAAG
GAGCCTTGTCAAATCGCAAAAATTTTCTGTATGTTTTGTACGCCATcact
caaaattttttaaactcttATATTAGGCCTTCTTTCAACATTTAAAATCT
TACATTTTGATGGAAAATGCCTTTTTTCTCTGTGAGCTGTATCGTCTGGT
TTAAAAGCTGTTAAGCGATCAGTTTTATTTTCTGCCAAGTCTGATTTGAA
AACCTTACTATCAAATGCATTCTTGCAATGTTTTCGTTCAGCCCGAGTCC
AATCTTGACTTGCAATTCTTTCGACAGTGCACCAAGATTCCTTGTCCATA
TCTATTTCCTATTCTAAATGTCTGCAaaataagaagataaaaaatttccc
TTTCAATCACAATACATATATGAACAAGAGATATATTTACTATGTTTAAA
GATTCTACTTAAATCTAGAAAANTTACATATATGAACAGAGATATATTTA
CTATGTTTAAAGATTCTACTTAAATCTAGAAAAGAGCAGTCAACTTTTCT
TTCGACTTTTCAACAGTCTGAtactttg
Run BLAST on NCBI

transcript from alignment at sc0000350:254040..265713-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020227 ID=TCONS_00020227|Name=TCONS_00020227|organism=Clytia hemisphaerica|type=transcript|length=11674bp|location=Sequence derived from alignment at sc0000350:254040..265713- (Clytia hemisphaerica)
TTTTTTCGTTCGTTCGTTGAGCTGGTCTATTATAAGGTATAGTTGTTAAA
GAGACAAGTGGATTGAACAAAAAATCTCGATTTCTGAGGAGACTTGAATC
AATCAAGATTGTTAAAGCGAGAAAAAGTAGGTTTACCGATTTAAGGTTGT
CTATATAATACAGCTCTTTTGCCAAACTTCGTCTGAGTTTTCTTCGTGTT
GATACTGTCAGCGTAGAGTCAACATCTAGAGTCATTTAAGGATTTCACAT
ACAAAAATTGCATGGATTAAGTGTGTAAGGTATTATTCATGTGTTTGTAT
GATGGGCGCTATATAAGGTATAAATACCTTTTCCCTCTCCGTTCTCCTCG
TGTAGAAATAGTTTATCCTTTGGATTCAAAATTGATTTTTGCTTTGATGG
TAATGCTTCTTACACTTCTAAAGGGAATAGAAAATTCTTGTTGTAAAAGT
TGTAATGTGAATTTTTTTACTGATATGTATATTCACCGACATGGTTAGAT
CAAGGTAAGGAGTTTTCGGTGTAAAGCATACTTCTCTAAAAGGAAACCTT
TTGAAATGTCTCACGAAAACAACAGTCAAGTGTCATCTGATAGACCTTGG
GTGTTCTCTTAGATAAGATTGCTGTTCTGTGGCTGTATAGTCTGGTGGGA
CCTGCTGAACTTAAGATCGTTAACGAGCACTAAATAGTTTGACAAGTACC
TGTCCTTTTCGGTATTATGAATACGATGAACCTTGCATAAATGAACCTTA
TACGAAACAAAAGTATATCCGGAAAATGCCATTTGATCCGGATTGCTTCA
ATTATCCGGACTTTCCGTATTTGAGAGAAATACAATTTATATATGGCTAC
TGTTGCGTGTTATTTTTGGGATGTTTTAAAAATTGTTTTGATTACTTATA
GAGGGAAATTAACTTGATGTTACAGAATTTGTTTTTACNCTAAAAATTGT
TTTGATTACTTAAAGAGGGAAAGTTAACTTGATGCTACAGAATTTGCTTT
TACTGTGTTAACTTCGTGTTAATTTTCACTATAAAGATCTTCCTTCCTTT
GAGAGACAAGGCTTTATAGTCTCTATGTCACCACTGTGTTTTTCATTAGA
ACTTATTCTTTCTATAAGCACTTTTTTAGAAAGTTGTAAAGAAGAAAAAG
ACTGGATCTTGAGACACGGCTTTTGAAATATGTAGCCACTAATCTACAAT
ATCTGGAGACTGGTTTTCTAAAATTTGTACTGAAGGAATCGTCGGGAGAC
TGAAAACGAGAGTTGGACAATCAAGTGCATTTTGTGGTTGCGGGGATTGA
ATAAGTCAAAGTGCTTATATAGAAATGCTAGCCAGTTGATTATTGAAGGT
TGTCACCTCAGTTTTTGTGTTGTACAGAGGACCGGTAATTCAACATCAGA
TGTCAACCAATGTTCTTATTTGATGTAAATTGAATGTTTATATTCGCGCC
ATTCAAAACGTATGAAACACTACAATCAGAACTTCATACAAAAAAATCTT
TCAACTACTTGTCAAAAACGTACAAATGTACTGATGAACTATGAGGATAG
AAAGTACATGTCTTTCACGAAAACGAACTGATTGATTTGTGTTGATTTTA
TGTTTTTGCGGGCTTTTTGTCCGTTTGTCATTTTTTCTTACCATTCATTT
TGTGGTGAAGGATTGCTTTTCCGTTGGCTGTCTATCGGTGACAACATTTC
TATATTTATAATATTGCTGAGGAAAGGACTCGCGTGGACCACCAATTTTT
ACTCGTTCCAATTTTTATTATTGTTGTTGATGAACCGAAGCTCGTAAGCG
GAATCAAAGAAGAGGCGTTATTAGAAAACAAAACAGTGATTTCATTAAAA
CGAAGATTAAATGATAATTTAGTGAACCTTCCAACGGATGATTAGAGATT
TATGTTGTTTTGTTGTGGATATCAATCGTTCAAATTGAATCCTGTTTATT
TAAGTTTTGAAAAAGGATATTGTGTCATTTCTCATCTCTCTCTTACTCAC
TATTCATCCGTCGTGTATTTTAGTACGAAATTCAGTGAACTTTTCATTGT
CACTACACTTCAAGTATAGATTTAACACGGAAAATACCTTTCTTGTGCAC
ATTGAACATTTTTTGTTTGTGGAATCGAGTTTGAGGAGACTTTTGGCTTG
TGTTGGACTTTTGAAAAGATAAATTTTACTGCGTGACATTATTTCATGGT
CGTAATACGTTCAAGATGACGTTACTCGATCAACTCTGGGAAGTTCTCCA
ATCAAGGTGCTCATTAATGGAGTTTAAACTATGAGTTTATGTCTGAGATT
TGCGGAGAAATCCTCTGCCCATTACTCTGTAAAAGTTTGGAAAGGAATGT
TGCGAGCATTTCCGAGAAATTCAGTTGATATCGCCAACGATTCTTTTTTT
CTACGATTGCCTTTGTCGTCGATTTTGGAAGATAATTTTTCAATCCTGAA
AGGCTTCGTAAGAGAGAAGCAACCGATTCGAATCTACTGGGATAGGAAAA
CCGGGATGTCCTCGAGTTGTGAGACTGGCTCAAAAATCAGATTTAAAAAA
TGTTTAAGCTTTCAGTGATGAAGAATATCTTCAATACCTTACGTAGTAAT
ATTCGCTTTTGTGCCCCTGTAATTAGTCTCCCGTTAAACCCTTGTTAACC
CATTTCTGTTTTATTTCGTACACAGTTCCATAGCTGAAGTGATTGAAGAC
CCGGTCAAGCCGACCTTGATTCAACAAGAACTTGAATGCTTGAACGAAGA
AATCATCAAGAATCTGTTAGACGAACAAGATGACATCCTCTTAAAATCCT
CATCCTCGTCAACAAACTCTACCGCTTCGCTTGGTGTACCTTCTGCATCG
ACGGCGTCATCGCAGCGATCGCTGAATGATACGCCAACGTACGGCAGTTC
TGACGGTGAAGCATTTACCGGCACTTTCTACAACGGCTCCATGATGTAAG
AATGCTTTCACTTTGTTTGTTTGTTACTCCTTGTAAAGAGTTACCCATTT
CAAAGTGCCTGCAATTCGTAAGGATTAATCAAAACTGCCTATAAGATAAC
GACTTCTTCTAAAACATGATTTTTGTGTGCAACCAACAGTTTTGATTCCT
CATGATTTATTGTGATCGTAGCATGAAATTTTAGATAGGCTATAATAGCT
GTTTGTATGCTTCCCATCGCCATAATCGAGCAAAAAAAGTGCATAGTTTG
ATATTTCATAAAAGTATTTGAAGCTTAGAATGTAGCTAGTGTAGACAAGA
ATCAGGGCTTTCTTTGTGACGGTTTTTCTTGTATTGATATTTTGAAACTG
TATAACTGGTTTTCCAAGGTGATGAAATCCACCAATTTGACATTTGAAAC
TTATCTTGAAAGTCATATTTTCGAAAGTTGATTTTCAATACGAATTAAAA
TATTTTGAAAACTAGATATAAATTTATCGCTAAATTTAGAAATCACTCAG
CAAGTTTTGTTATAAAAATAACTTTTTTCATCGTTAAGATTTGCTTCATG
TGTCAACTCAATATATAAAGTCGACAAGATAAGATTCTTTCCACTATTAA
CATCACGTTTTAAGTTTGGTGTGAAGTGATTAGATTTGGACGTGATTCTT
ACTCCTGGCTCCTGTCATTATTGAATATACAGTAATCAATTTTTTGTTCT
TCATTCCAAGAAACGAAGTCAGCTTTACGTCACTCTATAATTACATTTAT
CGTAATTATTGAAATCAAAAACATTTCGGATATCTTTTGTTCCATCTTCA
TCTACTCAGAAAGTAAAAAAGTTTCTCACAGAATTTATTGAAGGTAGATT
TAATAGTGAAAACACCTGTAAAGATGCCAGGTCTTTATAGAAATCAAAGA
AAAGGCCAACACGGTTCTCTACAAGACAGGTAGTCATTGAGTTCTGAAAT
CAATTTTGACATACGCAAAATTTCTTAACGGTATCTTTTGGCTTACTAAA
CTAGATAAAGTAACAGTAAGGGATGATGAATGAAAAGCTTTTGTGTGTAA
ATCAACTTATAAACTAACTAACTTGACTATTCAATTGGAATGTTTGGATG
AATAAACGAGTTAGCAGGAGATCGTTTTGATGTTATTTCCTCGTTCTCTT
GTTCAAGTCAATCTGAAAGAGAGCGGAAATTCTCCACATCGATTGGATTT
GAATCTCAACTTTAAGAAATTTCTTTAATTGATTTAACGCTGTCTTTCAC
TTTGGCCCTTGTTGAAAGACAATTCTGTAACGGCTTTTAGGTGATGTGTG
TGTATGGTTTTGTGTTTTTGAAGAGTTCTCGTTTAGCAGACGTTAGTTTA
GCCTCTTTGTCATTGTTGGAAAAGTGTTATGCGAGGGATGGTGTTTTCAG
CTAATTTTGATAATTGAGATTGACGATATCTGTGTCGTTCGAGTTCCATG
TATTTTGATTTGATTACTGTTACTTGGTATCCATGATTTGACTGCTGGTT
CAACTACATTTAAGCCTTTAGAATCCAAAGAAAGTCTGATATTTTGAACA
ACAGTGTCACCGCTATAACTAAAATGTTAACGAAGTTTTTTCAAATGTTT
TCTTTCAGTTATTCACCCGCACAAACGATCGAGGGGTCAGTTTCCCCGCC
ATCCAACCGACGTTTCCCGCCCATGATGGAAGCGTTAAAACTTACAGATC
GATTTGACGCCCCACACACGCCACTCACTAACGGGCACACTTTACCGCGC
AGCCACAGGCGGACACGAACCACATCGAGCGGCAGTTCAATAAGCGATGA
TGGTGCACTTTCGTCGCCTACTTCACCTTTCGGTCGCGGCACTTTCGGCA
GACGATTCAGAAGCACTGGAAGTAGTACGTCCTCGATCTCCTCGACGAGC
GGTAAGTGTAAAAAGAGTCTTATCTTTTCATATTTGGGTCAGATATAAAC
TAGTAGAATAATGGTGAAATACCCTTAGATTCTCCCATTATTTTTTCCAC
TTTTTAAAGAAGGAGACAATTAATCGCTTTCCATATCATAATTTCACTGT
TTATGTCATACTTGTCGGCGAGTGTCGGTTTGATGACGTCATGCTTTTGA
TCAATTAGGTCAGTCAATGTCGGTCGTTTTAATCTCATTGCGGGTGTATT
CAAGACGTTAATGAACGGGGCAAACTATAATGGATCGGGCACAAATCTTT
AATGGGTTTAAAAGGTGACTTAGGCTTAAACTCTAGCTGACGTTAGCTAA
TTGTTTAAGGGCTGGATTGTTTTTGATCATTTGAGCTCTTTAAATTGATA
TGTTATCAAACGTCGTTCACTCTTCCATTGTTTGCTGTAAGCCTCACAAA
ACAACAACAAAATGTATAGTCTAAAATTTTAAATTATGTTCATCTTCTCT
CAATATGATTATATCCCATTAATTAAGAACCAAGTTATGTTACAAATTTT
TGAAAGAAAGCTTTCAGGGAAGTACAAGTTTACTTTTTATTACACTTTTT
TTATATAAGAACAATAAGGCTCAAAATCGCCAAAAAATAAGAACAACGCT
GAGCCTGAAATTACTCAAATTCAAGTAATTTAGAGGTGAAAGTCGTAAAA
ATTGGGTATAACGCCTAGAATACCTCAATTACACCTTATAAATAAGAACA
GGATAAGAACAATTTGAAGCTCAAAGTGCCAAAAGAATAAGAACAACAGA
GCCTCAGAAAAATTTTACTGATTCTTATAAAAAAAGTGTATGCAGTCAAA
ACGGTCTTTATCAGGAAGACAAAGATTTGAGTCGAAATCAACGACATAAA
AACTTGTTATTTGCACTCAGACAAAGCTTGAGCTAATCCGGAAAAGGACT
TAAATGCTTTCAGTCTAGTATTTTCCCAGGCTAAATGATTAGTTAAGTCT
CATTAAGAAGTCTCTTAAACTTTCAAATGTTTGTATGAGCTTAGGGAGGA
GTTTTTGGTCATCTTTTTCTGAAAATTATTGTCTTGTTTGGAAAAGTCAT
TTCTTGTCTTATTTCCTTGTTACAAATCCAATATGTTGTCTCTTTTGTGT
CACTTTGTTAGGTGTCAATATTAGAAGTTCAGCTTGTTCCCTTAATTTCC
TGATTTCATCAACCTAAATAAACTTTAGGCCTTGAGATTAAACGTTTGAC
CAGAATTTAGCTTGATATGACGGGAGAAGCGGAAAAAAGGTTAACAATAT
GAAAGAACTAGATCCTGTTTAGGATATTAGAAACAAACTACCAGCTCGCA
GTTCTATAAATCGGTTAAAAAATTCATCAGAACTTAAACATTAGATTTCC
TCATTCATTACAGACTTATTTCAAGAAGTGTTGAGATACCCGGCCGTGAA
ATTCGATAAAGACACGGTTGACTTGTGGTATCGACCAAATATCACACGAG
ATGAAGGTAAGTTCTTTTGATTGATATTCTCATAATAAACAAACAGGATC
TTTCAAAGCTTTATGAAGAAAAAATGCTACAGGATCGTACCAAAGTTCTT
TCGCATAAGCTTTAAAACGTTTCCTTTGTACCTCAATAACTTTTTTGGAT
TTCCTGGATAACCATTCGGCTAGCTTTATTATCCCTATACTGATTCTTGC
AGCATAGGGAGACATTAAGTTCAACAATTTAACGGTGAGTATACCAATCA
TTTAAGACAATGAATGGACCCGGTGAGCTGCTTGAAGTGAGAGATTGGGC
GACGAAAATTTTTTCACATTCTTCTAAACACGATAAGATGATATTTAAAT
GGGTCAGATTAGGATTTTGACTTTGACAAATACATAGCCTGCAAAAAAGT
TGACGGGGCCCATAATTTTAAAGATGGTATTGTCGGTCAAAAAGTTGAGC
TCCTCGCTCCCTAATATCGCTTGAATCTTCCTCAGCACACGATAAAACAC
GATAAATATAATTCTTCTCATCTTTGTAGCAACAAGCTTACTTCGAGACG
CAGAGCCAGGAAGTTTCTTGGTACGAGATAGTCAAACCTATGATGGAGCT
TTCGGATTAGCTGTGAAAGTGGATTCGCCACCTGCCAGTGTCCTGAAACA
AGTCGATGGAGATGTTTGTAAGTTTAACATTTTGGATTTGTTTAAGATGT
ATAAGTGAATTTCATATTCACATTCACCCTATGATTACTATGACGAAAAT
GAGTTGAACTATTTGATAATGTCAGTGATAGACGCGAAACTTGTTTGTAG
AGTCGTCGCTCTATTTTAATGATCATTCTTCCTCCTCTTTAATGATCATT
CATCTTAATGATCACCTTCCCTATATTCTTTGAAGAAAACTTTTCCAATA
TTCTCTGTTTTAGCGAAAATCGATTTAGAGAACGAACTGATACGTCACTT
TCTTATCGAACCTTCGAAGAAAGGAGTGCGCTTGAAGGGAAGCAACGAAG
AACCAACTTTCCCTAGCCTAGTTGCCCTCATCTATCAACATTCCATCACT
AAGATGGCCCTCCCAATCACTCTTCTTATACCTTACAAAGGTAAGCTTTG
ATTAACACTTTCATTGAAAGTTTATGGAGTCATCTTCTATTAAAACCTTT
CAAAGAATTGATTCCCTTAACATGAAACTTAGACGAGAACCTAAAAACGT
TCCTGGCTTGAATTAATTTCCAAAGGCATCAATTTTTTATATGTTATGGT
TAAACAGCGATAAGCCATAATCGTTGAGGCAGACTTTGATTACCCTGTGG
GTCATCTATTTCGTTATGAATCTAACGACAAAGTAATGGTGTAACTTCTT
ATCTTCATATTGATAGACTCAGTTGACGGTGGCAACCCTGCAGACAACCG
ACTGTCAAAACTCAGCGAAACACAATTACTGGTCAAAGGAGCAGCATGTG
ATTTATTATACCTGGGCGGTGTGAAGGTGGACAAGCTAACGGGTGATGGA
GCTGTCCAGTACGCCATGAACAAGGTGGCATCACTTTCCACCCAATTAAA
GACTACAATCGTTAACATCAAAGTCAACCAAGATGGTATCACCCTCACCG
ATAACAATCGAAGGTTTGTCTCTATTTTCATACAAACATATATCAGTCTA
ATCGAAGCTGAGAATATGAAAAAAGCTCCGTTCTTGTAATTAGAGAATAG
ACTTCGACTTGACTGTCCGAAAATGGCGGACAATTTAAAAAAGCAAGCAC
GCGAACAAGAGATCTTTAGATCTCAATTAAAGTATGTTTGGCATAACATT
TAAAATCCTGCTCCTGTTTCCAGGATGTTTTTCCGGCAACATTTCCAGAT
GGCGAATGTCCTACATTGTGGAGTGGATCCAAAATCACGACAAGTTAATT
TGAAGACATTCGCGAATCGTGAAGACAAAGATGTCGGGTAAGAGTCTACT
TTTTGTAGATTATATAGCTTAATTCTTTCGTTTACATGTTTGTTTTATAA
GCATTGCACGTATAAGCATATCTAGGCTCAGATATTAGTAGGGGGAAATT
TGTTCGTTTTTTTGAGGTCGCTCGATTTTTTTAGTCAAAGCACTTGTTAT
ACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCAAGTTATTTTGATTCCCCTACCC
TTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAATCGAGC
GATTTTACAAATTTCCCCCTACTATATGTCAAAAATCTAATCATACACAG
TAATGATTTTGCCCTGTTTTTGGCTGAAATTTTACGGTTTCTCTGAATAT
TCCTATGATTTTTGCATGAGGAATATAAGCACCCTTATAAGCATTTTTTA
GCCTTGTCAAGCCCTCGAACTAAGCACCTCCGAGCCTGTTTTCTATATTT
ATAAAAAACATGTATCTGGATATCTTGGTTTTATCGGAGCTCGTTTAAAG
CTTTTATAGAGTAGGGTTTAGATAAGGGTTTCGAATTCAAGATTTACAAC
CCATACCGTCATATTTGAACGTTCATTTTTGTTTCCCTTTTTAGTTGTTT
CGGCTTTGTGGTAGAGAATGAAAGGAAGACAGAACATCAATGTTACATGT
TCGCTGAACTGGAGCAAGATCAACCAGCTTCGGCCGTCATCAATTTCATA
CATAAAGCCATGCGGTACGCTCGTGTATAAACTTTAATGGTGGTGTTGGA
TTATGTTTCAGTTGAGAAGCAAACGTAATGGAGAAAAATGGTTCCTATTC
CACATGAGTAGCGTTCGATACGTAGTTTGGCTCAACGGTAGAAGAGCACG
CGTTCTCAGACCAGATGTAGAATTCGGGAAACCTATATAATACAATCATG
TTAGAACTGTAAAATAAAAAAAAATCATCTAACGAAAAACAAATCTGCTG
TGGTAACAAAATAAGCATAAGCTAAACAAAGACATATAAAAGCAAATTTA
ATTTCGAAGACAAAAGATGGAAGATGTTTTATTGGTAAAATACAGACTGG
TCTGTAAATTATATTTATACACTTTTTTTATTTACTTACTGTCATGGTTT
CGGTGACAGCATGCAGGGATTTCCCGAGCTGTTAATTAAAATATACATTT
AATTGTAAGCATTTTACTGTACAAAAAATTATTCACTCTCAGAGGGTCAA
CGATATAGGTTGGTTCAACGCTCAAAATTTTCAAAGACAACCTTTCAGAA
CATTTTGCTACTCAGTACTCAAATACTTGTTTTTTACAAGCATAACGTTT
ATAAGCATACGTAGGCTCACTATTTGGTACCCAAACAATGGCTCTATTGA
ACAATCGAATGCTAATCACATTGCGAGCCTGGTATAGGTGCAGACACTTG
CTCATAAAAAAACATGTAATATCGAATTCAAACTGGTGTCTCTAAGAGAA
AAAGTAAATTTTTGTTTTGAAGAATTTTCATACTGTTGGCTTCTTGGCTA
CAATACATGGGAACTTGATTTGATTAAATAAAAAGCAATTTGTTATACTT
TGTAATATTATCGCGAAATATATTTGAAAATATTCCAATGTTTTTTCTAC
GTTTTCTAAGATATATAGTTTTACAATATTCCTTCTTTGTTATTTAAAAA
GATAAACACCCTTTATTATGTAAATAGATCTTATCTTAAAAAATCTATAA
AATTAACATCTTCTGACTTTATATCCTAAACCTCGAATAAAAGGTTGCTT
TCTGATGCAGATCAATATGATAATTCTAATTCGCAATGATGGACTNATGA
TCTGGTCGAATGTCTTCTGACTTTACATCCTCAACCTCGAATAAAATGTT
GCTTTCTGATGCAGATCAATATGATAATTCTAATTCGCAATGATGGACTT
ATTGGTATACTTAAAAAGAGCTAAAAACAGTAAAAAAGGCCTTTAAAAAA
TGTACAAAATCTAATCAGAGGATAATTATCAAAATAAATAATTTTTCAAG
TTCTATAATAAGATATTTTAGGTGTGACTCGTCTACATCTTGAATTGAGT
TTCATCTATAAGAAGTATGTAAAAAACATTGTTGAATCTCATAACTTGGC
ACTGCTTGGCAATGTACCCATTTAATAGCATATAGTCATGCACAACGTTA
AAAGGAAAAAAATCCCAAAAACACAGCAAGCAGCAAACTCAAATTTTAAA
GCTTTTATCACCTTTCTCCAGCCTACATAAAAAAGCATGCAGGAAGGAGC
CTTGTCAAATCGCAAAAATTTTCTGTATGTTTTGTACGCCATCACTCAAA
ATTTTTTAAACTCTTATATTAGGCCTTCTTTCAACATTTAAAATCTTACA
TTTTGATGGAAAATGCCTTTTTTCTCTGTGAGCTGTATCGTCTGGTTTAA
AAGCTGTTAAGCGATCAGTTTTATTTTCTGCCAAGTCTGATTTGAAAACC
TTACTATCAAATGCATTCTTGCAATGTTTTCGTTCAGCCCGAGTCCAATC
TTGACTTGCAATTCTTTCGACAGTGCACCAAGATTCCTTGTCCATATCTA
TTTCCTATTCTAAATGTCTGCAAAATAAGAAGATAAAAAATTTCCCTTTC
AATCACAATACATATATGAACAAGAGATATATTTACTATGTTTAAAGATT
CTACTTAAATCTAGAAAANTTACATATATGAACAGAGATATATTTACTAT
GTTTAAAGATTCTACTTAAATCTAGAAAAGAGCAGTCAACTTTTCTTTCG
ACTTTTCAACAGTCTGATACTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011353XLOC_011353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020227-exon-sc0000350-1575043694:265598..265713TCONS_00020227-exon-sc0000350-1575043694:265598..265713Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:262769..263038TCONS_00020227-exon-sc0000350-1575043694:262769..263038Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:260863..261155TCONS_00020227-exon-sc0000350-1575043694:260863..261155Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:259358..259450TCONS_00020227-exon-sc0000350-1575043694:259358..259450Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:258697..258834TCONS_00020227-exon-sc0000350-1575043694:258697..258834Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:258274..258450TCONS_00020227-exon-sc0000350-1575043694:258274..258450Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:257751..257997TCONS_00020227-exon-sc0000350-1575043694:257751..257997Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:257427..257540TCONS_00020227-exon-sc0000350-1575043694:257427..257540Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1575043694:254040..256219TCONS_00020227-exon-sc0000350-1575043694:254040..256219Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:265598..265713TCONS_00020227-exon-sc0000350-1510915933:265598..265713Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:262769..263038TCONS_00020227-exon-sc0000350-1510915933:262769..263038Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:260863..261155TCONS_00020227-exon-sc0000350-1510915933:260863..261155Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:259358..259450TCONS_00020227-exon-sc0000350-1510915933:259358..259450Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:258697..258834TCONS_00020227-exon-sc0000350-1510915933:258697..258834Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:258274..258450TCONS_00020227-exon-sc0000350-1510915933:258274..258450Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:257751..257997TCONS_00020227-exon-sc0000350-1510915933:257751..257997Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:257427..257540TCONS_00020227-exon-sc0000350-1510915933:257427..257540Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1510915933:254040..256219TCONS_00020227-exon-sc0000350-1510915933:254040..256219Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:265598..265713TCONS_00020227-exon-sc0000350-1491911889:265598..265713Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:262769..263038TCONS_00020227-exon-sc0000350-1491911889:262769..263038Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:260863..261155TCONS_00020227-exon-sc0000350-1491911889:260863..261155Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:259358..259450TCONS_00020227-exon-sc0000350-1491911889:259358..259450Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:258697..258834TCONS_00020227-exon-sc0000350-1491911889:258697..258834Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:258274..258450TCONS_00020227-exon-sc0000350-1491911889:258274..258450Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:257751..257997TCONS_00020227-exon-sc0000350-1491911889:257751..257997Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:257427..257540TCONS_00020227-exon-sc0000350-1491911889:257427..257540Clytia hemisphaericaexon
TCONS_00020227-exon-sc0000350-1491911889:254040..256219TCONS_00020227-exon-sc0000350-1491911889:254040..256219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:254040..265713 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000259298	0	0	0.603176	0.590366	0.574111	0.358039	2.08468e-06	4.51478e-07	0	0	5.74632e-07	1.31401e-09	0.00187491	0	0.993131	0	2.56666	1.11488	0.0908829	0.00926964	0.00054966	3.46938	0	0.000245875	3.73135	0.137325	0.708713	0.0856124
Blast
[Close]
BLAST of TCONS_00020227 vs. Swiss-Prot (Human)
Match: TENS1 (Tensin-1 OS=Homo sapiens GN=TNS1 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 9.423e-69
Identity = 126/286 (44.06%), Postives = 186/286 (65.03%), Query Frame = 1 
Query:  712 VKFDKDTVDLWYRPNITRDEATSLLRDAEPGSFLVRDSQTYDGAFGLAVKVDSPPASVLKQVDGDVSKIDLENELIRHFLIEPSKKGVRLKGSNEEPTFPSLVALIYQHSITKMALPITLLIPYKDSVDGGNPADNRLSKLSETQLLVKGAACDLLYLGGVKVDKLTGDGAVQYAMNKVASLSTQLKTTIVNIKVNQDGITLTDNNRRMFFRQHFQMANVLHCGVDPKSRQVNLKTFANREDKDVGCFGFVVENE-RKTEHQCYMFAELEQDQPASAVINFIHKAM 1566
            VKF +DT   WY+P I+R++A +LL+D EPG+F++RDS ++ GA+GLA+KV SPP ++++Q      K D+ +EL+RHFLIE   +GV+LKG   EP F SL AL+YQHSI  +ALP  L+IP +D  D     D+     S   LL +GAAC++L++  V ++ LTG  A+  A ++  +       TIV+ KV+  GITLTDN R++FFR+H+ +  V  C +DP+ R+  +KT      K    FGFV   +   T++ C++FAEL+ +QPASA++NF+ K M
Sbjct: 1453 VKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLAMKVSSPPPTIMQQNK----KGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSLSALVYQHSIIPLALPCKLVIPNRDPTDESK--DSSGPANSTADLLKQGAACNVLFVNSVDMESLTGPQAISKATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKW-MKTEGGAPAK---LFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVM 1728
The following BLAST results are available for this feature:
BLAST of TCONS_00020227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENS19.423e-6944.06Tensin-1 OS=Homo sapiens GN=TNS1 PE=1 SV=2[more]
back to top