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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020247 ID=TCONS_00020247|Name=TCONS_00020247|organism=Clytia hemisphaerica|type=transcript|length=1380bp
CAGCTAGCATCTTGATTTGTAAATTGTAGACAAATTCCATGTGTTCCTTG
CATCTTTGTAATGCAGGAGCAGTAATGTTTAATAAGTCTTTACCATCACA
ATCAGTTTTCCCTGGATCGGATTTAACGTTGTTTTCTGCAAAGCTAGCAT
CTTTGTCTCTCCTGTGTTCGCCATTTTCTGAAATGGTTGTGCTACTTCCG
ACTACACCGTTGATATTATCTGCTTTGGGTTCGCCAGTTGCTGAAATGGC
TGTTCCATTTTCGACTTCGCTGTTGACATTATCTGCTTTGGATTCGCCAT
TTTCTGTAGTGGTTGtgtcattttcaattttgctGTTGACATTATCTGCT
TTGGATTCGCCATTTTCTGTAGTGGTTGtgtcattttcaattttgctGTT
GACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTgcgtcatttt
caatttcaccgTTGACAATATCTGCTTTGGATTCGCCATTTTCTGCTTTG
GTTGTGTCATTTTCGACTTCACCGTTGACATTATCTGCTTTGGATTCGCC
ATTTTCTGCAGTGGTTGTGTCATTTTCGACTTCACCGTTGACATTATCTG
CTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGACTTCACCG
TTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAGGTCTC
ACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTCTGCTT
TGGTTGTgtcattttcgatttcaccGTTGACATTATCTGCTTTGGGTTCG
CCATTTTCTGCTTTGGTTGAGGTCTCACAAATATCCCTGACTTAGTTATC
TGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTgtcattttcgatttcac
cGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAGGTC
TCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTCTGC
TTTGGTTGTgtcattttcgatttcaccGTTGACATTATCTGCTTTGGGTT
CGCCATTTTCTGCTTTGGTTGTgtcattttcgatttcaccGTTGACAATA
TCTGATTTATGGCCTTCTTCAGATGGACTTTCCAAAtcgaattcattttt
ttttgaatcgAGTTTTCCATTTTCTCCCTCCTTACTGATAAATATTTCTG
GATTCACGATGACATCTTGTTCATTGAAGCTGGCGCTTTTTACTTTTCCA
TCAAGTCTTTTGTTTTTTCCAGGTTTGAGGTATTTAGTAGGATCAACGTC
CATCATTTGGAAGGTTTTATCTTGTAGGAAGGGCAGCAATTCAATCAGTG
AATAAACATCGTTAATCCGGTAAAGCATCT Run BLAST on NCBI transcript from alignment at sc0000350:437047..439056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020247 ID=TCONS_00020247|Name=TCONS_00020247|organism=Clytia hemisphaerica|type=transcript|length=2010bp|location=Sequence derived from alignment at sc0000350:437047..439056- (Clytia hemisphaerica)
CAGCTAGCATCTTGATTTGTAAATTGTAGACAAATTCCATGTGTTCCTTG
CATCTTTGTAATGCAGGAGCAGTAATGTTTAATAAGTCTTTACCATCACA
ATCAGTTTTCCCTGGATCGGATTTAACGTTGTTTTCTGCAAAGCTAGCAT
CTTTGTCTCTCCTGTGTTCGCCATTTTCTGAAATGGTTGTGCTACTTCCG
ACTACACCGTTGATATTATCTGCTTTGGGTTCGCCAGTTGCTGAAATGGC
TGTTCCATTTTCGACTTCGCTGTTGACATTATCTGCTTTGGATTCGCCAT
TTTCTGTAGTGGTTGTGTCATTTTCAATTTTGCTGTTGACATTATCTGCT
TTGGATTCGCCATTTTCTGTAGTGGTTGTGTCATTTTCAATTTTGCTGTT
GACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTGCGTCATTTT
CAATTTCACCGTTGACAATATCTGCTTTGGATTCGCCATTTTCTGCTTTG
GTTGTGTCATTTTCGACTTCACCGTTGACATTATCTGCTTTGGATTCGCC
ATTTTCTGCAGTGGTTGTGTCATTTTCGACTTCACCGTTGACATTATCTG
CTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGACTTCACCG
TTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAGGTCTC
ACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTCTGCTT
TGGTTGTGTCATTTTCGATTTCACCGTTGACATTATCTGCTTTGGGTTCG
CCATTTTCTGCTTTGGTTGAGGTCTCACAAATATCCCTGACTTAGTTATC
TGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGATTTCAC
CGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAGGTC
TCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTCTGC
TTTGGTTGTGTCATTTTCGATTTCACCGTTGACATTATCTGCTTTGGGTT
CGCCATTTTCTGCTTTGGTTGTGTCATTTTCGATTTCACCGTTGACATTA
TCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGTGTCATTTTTTATTTC
GCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTGGTTGTGT
CATTTTCGACTTCACCGTTGACGTTATCTGCTTTGGATTCGCCATTTTCT
GCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGACATTATCTGCTTTGGA
TTCGCCATTTTCTGCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGACAT
TATCTACTTTGGTTTCGCCATTTTCTGCTTTGGTTGTATCATTTTCGACT
TCACCGTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTGT
GCCATTTTCGATTTCGCTGTTGACATTATCGGCTTTGGGTTCGCCATTTT
CTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGACATTATCGGCTTTG
GGTTCGCCATTTTCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGAC
ATTATCGGCTTTGGGTTCGCCATTTTCTGCTTTGGATGTGTCATTTTTTA
TTTCGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTGGTT
GTGTCATTTTCGATTTCGTCGTAAACAATATCTGATTTATGGCCTTCTTC
AGATGGACTTTCCAAATCGAATTCATTTTTTTTTGAATCGAGTTTTCCAT
TTTCTCCCTCCTTACTGATAAATATTTCTGGATTCACGATGACATCTTGT
TCATTGAAGCTGGCGCTTTTTACTTTTCCATCAAGTCTTTTGTTTTTTCC
AGGTTTGAGGTATTTAGTAGGATCAACGTCCATCATTTGGAAGGTTTTAT
CTTGTAGGAAGGGCAGCAATTCAATCAGTGAATAAACATCGTTAATCCGG
TAAAGCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020247-exon-sc0000350-1575043694:437961..439056 | TCONS_00020247-exon-sc0000350-1575043694:437961..439056 | Clytia hemisphaerica | exon |
| TCONS_00020247-exon-sc0000350-1575043694:437047..437330 | TCONS_00020247-exon-sc0000350-1575043694:437047..437330 | Clytia hemisphaerica | exon |
| TCONS_00020247-exon-sc0000350-1510915933:437961..439056 | TCONS_00020247-exon-sc0000350-1510915933:437961..439056 | Clytia hemisphaerica | exon |
| TCONS_00020247-exon-sc0000350-1510915933:437047..437330 | TCONS_00020247-exon-sc0000350-1510915933:437047..437330 | Clytia hemisphaerica | exon |
| TCONS_00020247-exon-sc0000350-1491911889:437961..439056 | TCONS_00020247-exon-sc0000350-1491911889:437961..439056 | Clytia hemisphaerica | exon |
| TCONS_00020247-exon-sc0000350-1491911889:437047..437330 | TCONS_00020247-exon-sc0000350-1491911889:437047..437330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:437047..439056 - |
Blast
The following BLAST results are available for this feature:
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